Branchiostoma floridae (Florida lancelet): 118409608
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Entry
118409608 CDS
T01074
Name
(RefSeq) nuclear cap-binding protein subunit 1-A-like isoform X1
KO
K12882
nuclear cap-binding protein subunit 1
Organism
bfo
Branchiostoma floridae (Florida lancelet)
Pathway
bfo03013
Nucleocytoplasmic transport
bfo03015
mRNA surveillance pathway
bfo03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bfo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
118409608
09122 Translation
03013 Nucleocytoplasmic transport
118409608
03015 mRNA surveillance pathway
118409608
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bfo03019
]
118409608
03041 Spliceosome [BR:
bfo03041
]
118409608
Messenger RNA biogenesis [BR:
bfo03019
]
Eukaryotic type
mRNA processing factors
5' end processing
Cap binding complex
118409608
Spliceosome [BR:
bfo03041
]
Common components
Common spliceosomal components
Cap binding complex
118409608
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MIF4G_like_2
MIF4G_like
MIF4G
WHIM1
Motif
Other DBs
NCBI-GeneID:
118409608
NCBI-ProteinID:
XP_035666641
UniProt:
A0A9J7KMC4
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All DBs
Position
2:complement(18942108..18953142)
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AA seq
805 aa
AA seq
DB search
MSRRRRYSDDEDEGRGAKRRRTSEPLEIEDRLESLITRVGEKSTSSLESNLEGLASVLEA
DLPNYKAKILKILVDCAVQLPEKLSVYTTLVGLLNARNYNFGGEFVDAMVKRFKDSLKEN
KFEEGRVIVNFLADLVNCHVIAAPSLLAWYEAFVNVTLEDDIPQVRADWFVYATLSTLPW
VARELYEKKEAEMERLLTNIDAYISKRQKVHVSILRVWSSDIPHPQEEYLDCLWAQIKKM
RMDKWQERQIVRPYLAFDNILCEALQHNLPPYNAPPHTDDSSYPMPSVVFRMFDYTDAPE
GPVMPGHHSVDRYLIEENLRRIIDTYAVDRKECAAQLLNYPFKNKIPLNYHIVEVVYGQL
FQLPFAPHVDVFYTTLLIELCKLQPSSLPQVLAQATEMLYERIDTMNIACVDRFVNWFSH
HLSNFQFRWSWDDWTPCVELDSSLYKPKFVQEVLGKCVRLSYHQRIIETVPDAYGPLLPH
EPNHVYKYEQEGAGSLPGTVAAHQLIASIKAKAEPEELMNILKDLPNPKKDDDGEAAFNP
LKIDVFVQTVLHLGCKSFSHAFSALAKFHGIFRELAEEEEAQIHILRTMYDVWKKHPQMM
FVLVDKMLRTQIVNCSAVANWLFSHDMSQDFTRLYVWEIMHSTIRKMNKHVEKCNAGLTE
GQQHTAEKSPQVQKELGDAQQKTEKSGDKSGSEDEMQDMDGVDEEEIEHLQERLESAQSE
QKKLFLVIFQRFIMVLTEHLGRCETSGKDFNTAWYRYSSERLQQIFLQHHSTVTKYLDTL
ENLLFTSDTDAHILRVFQQFCALRA
NT seq
2418 nt
NT seq
+upstream
nt +downstream
nt
atgtctcgaagacgaagatacagtgacgatgaagacgaaggtcgcggtgcaaaacgacgc
cgtactagcgaaccactggagatcgaagaccgactggagtcactcatcacacgcgtaggg
gagaagagtacgtcatcgttggaatctaacctggagggtctggccagtgtgttagaagct
gacctcccgaactacaaggccaagatcctcaagattcttgtggactgtgctgtacaactg
cctgagaaactgtctgtgtacaccacgcttgttggcctgctcaatgctcgcaactacaac
tttgggggcgagttcgtggatgccatggtcaaacggttcaaggatagcctgaaggagaac
aagtttgaggagggccgggtcattgtgaacttcctggcagacttggtgaattgtcatgtg
attgcagcaccgtcactcctagcctggtacgaggcctttgttaacgtcacactggaagac
gacataccccaggttcgagcagactggtttgtgtatgccaccctcagcacactaccatgg
gttgcgagggaactttatgagaagaaagaagctgagatggaacgactgctgacaaacatt
gatgcctacataagtaagagacagaaggtgcatgtgtccatcctgagagtgtggtcctct
gatatcccccacccacaagaagagtacctggactgtctgtgggcacagatcaagaagatg
cggatggacaagtggcaggagcgacagatcgtgcggccgtacctggcatttgataacatc
ctgtgcgaggccttgcagcacaaccttccaccctacaatgctccaccgcacactgatgac
tcctcctaccccatgccttctgtcgtcttcaggatgtttgactacacagatgcaccagag
ggtcctgtgatgccaggccaccactctgtggacagatacctgatagaagagaacctgagg
aggatcattgacacatatgctgtggacaggaaggaatgtgctgcccaactgctgaactac
cccttcaagaacaagattccactcaactatcatattgttgaggtggtgtatgggcagctg
ttccagctaccgtttgccccccatgtggatgtgttctacaccacattgctgattgagctg
tgtaaactccagcccagctccctgcctcaggtcctggcacaggccacagagatgctgtat
gagagaatagacaccatgaacatagcatgtgtggacagatttgtgaactggttctcgcac
cacctgagtaacttccagttcagatggagttgggacgactggacgccgtgtgtagagttg
gacagctccctgtacaagcccaaatttgtgcaggaggtgttgggaaaatgtgtcagatta
tcgtaccaccagcggatcatagagacagtccctgatgcctacggaccactgctgccacat
gaacctaaccatgtctacaagtatgaacaggagggagcaggttcattgccaggtacggtg
gccgcccaccagctgatcgcctccatcaaggccaaggctgaacctgaggagctgatgaac
atactcaaggacctgccaaaccccaagaaggacgatgatggtgaggcagcctttaaccca
ctgaagatagatgtttttgtacagacagtgctgcaccttggttgcaagtccttcagtcat
gccttcagtgcactggccaaatttcatgggattttccgtgagcttgcagaggaggaggag
gcacagatacatatcctgcgtaccatgtatgacgtctggaaaaagcacccacagatgatg
tttgtacttgtggacaagatgctgagaacccagattgtcaactgttcggctgtggccaac
tggctcttctcccatgacatgtcgcaggacttcaccagactgtatgtttgggagatcatg
cactctactatcaggaagatgaacaagcatgttgagaagtgcaatgcagggctaactgag
ggtcagcagcacacagctgaaaagtcacctcaagtgcagaaagaactgggggatgctcag
cagaaaacagagaaaagtggtgacaagagtggcagtgaggatgagatgcaggacatggat
ggagtggatgaagaggaaattgagcatctccaggagaggctggagtctgcacagagtgaa
cagaagaaactattcctggtcatcttccagcgtttcatcatggtgctgacagaacatctt
ggcagatgtgagacctcaggcaaagacttcaacacagcctggtacagatattccagtgag
cgactccagcagatcttccttcagcaccatagcacagttaccaagtacctggacacgctg
gagaatctcctcttcacctcggacacagatgcacacatcctccgggtgttccagcagttc
tgtgctctacgggcataa
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