Branchiostoma floridae (Florida lancelet): 118409889
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Entry
118409889 CDS
T01074
Name
(RefSeq) regulator of nonsense transcripts 1-like isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
bfo
Branchiostoma floridae (Florida lancelet)
Pathway
bfo03013
Nucleocytoplasmic transport
bfo03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
bfo00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
118409889
03015 mRNA surveillance pathway
118409889
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bfo03019
]
118409889
Enzymes [BR:
bfo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
118409889
5.6.2.5 RNA 5'-3' helicase
118409889
Messenger RNA biogenesis [BR:
bfo03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
118409889
mRNA cycle factors
Common to processing body (P body) and stress granule
118409889
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
UvrD-helicase
Viral_helicase1
DEAD
NPHP3_N
NAT10_TcmA_helicase
nSTAND3
AAA_16
SRP54
ATPase
AAA_22
PhoH
UvrD_C_2
Motif
Other DBs
NCBI-GeneID:
118409889
NCBI-ProteinID:
XP_035667154
UniProt:
A0A9J7KNL3
LinkDB
All DBs
Position
2:complement(21016877..21038009)
Genome browser
AA seq
1112 aa
AA seq
DB search
MSSVEAYGPSSQSLTFLETEENDLLMGADTQGTEFDFTDFTLPSQTQTQSQASQLEHQNL
HSQVNGQDGSLQNGLDDGIGAATQAMGELNFEEEEEEDTYYTKDLPNHACKFCGIHDPNC
VVMCGMCKKWFCNGRGNTSGSHIINHLVRAKHKEVTLHKDGALGETVLECYNCGCRNVFL
LGFIPAKADSVVVLLCRQPCATQSNLKDMNWDQTQWQPLIQDRCFLPWLVKVPSEHEQLR
ARQITAQQINKLEEIWKENPNATLEDLEKPGVDEEPQAVLLRYEDAYQYQNILGPLVKLE
ADYDRKLKESQTHSNITVRWDLGLNKKRLAYFTMPKTDSDMRLMPGDELRIRYEGELGPK
WKEVGHVVKVPDNYTEDVCIELRSNAGAPVDLTHNFAIDFVWKSTSFDRMQAAMKTFAVD
ETSVSGYIYHKLLGHEVEDVVMKTQLPKRFSAPGLPELNHSQVYAVKTVLQRPLSLIQGP
PGTGKTVTSASIVYHLAKQNNGQILVCAPSNIAVDQLTEKIHRTGLKVVRLCAKSREAID
SPVSFLALHNQIRNMERSECLPELQKLQQLKDETGELSSADEKRYRTLKRNAERELLQHA
DVICCTCVGAGDPRLQKFQFRTVLVDESTQATEPECMVPIILGCKQLILVGDHCQLGPVV
MCKKAARAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAAER
TKKGLDFPWPQPDKPMFFYATSGQEEIASSGTSYLNRTEASNVEKITTKFLRAGVKPDQI
GIITPYEGQRAFVVQYMQFGGQLHTKLYMEVEVASVDAFQGREKDFIILSCVRANEHQGI
GFLKDPRRLNVALTRARYGIIIVGNPKVLSKQPLWNNLLVDYKEQKVLVEGPLNNLKESM
VQFSKPRKLVNTTNPGGRFMSTAMWDAREALIPGGAYDRSGAFNGGPGYGSNDYYRPHDQ
MSMISNEHSQAAGMALPIPVGMFMPPAHPPGPYYGQGVPGRPPMNRGPNRKGGRGQRQQK
NTYNSYNSMQSQSSQDASQPFSQGPLTQGHLSMSQPSQMGQSGLSQPGLSQPELSQDSYM
GDEFKSQADAVLSQDSTYQGDRAYQHAGFSQY
NT seq
3339 nt
NT seq
+upstream
nt +downstream
nt
atgagcagcgtcgaggcgtatggaccgagttctcagtcgctaactttcctagaaactgaa
gagaacgacctgcttatgggagcggacacgcaagggaccgagttcgacttcacggacttc
acccttccctcccagactcaaacccagagtcaggcaagtcaactggagcaccagaatctc
catagccaggtgaatggacaagatggctccctgcagaacgggctggatgatgggatcggg
gctgctactcaggccatgggagagcttaactttgaggaagaggaggaggaggacacttac
tacaccaaggacctgccaaaccatgcctgcaagttctgtggtatccatgaccccaactgt
gtggtgatgtgtggaatgtgcaagaagtggttctgtaacggccgtggcaacacctctggc
agccacatcatcaaccacctggtgagggccaagcacaaagaggtgaccttgcacaaggac
ggagccctgggagagacagtgctggagtgttacaactgtggctgtaggaacgtcttcctg
ctgggctttattcctgccaaggctgactcagtagtggtgctattgtgtcggcagccatgt
gcaacccagtccaacctgaaggacatgaactgggaccagacccagtggcagcccctgatc
caggaccgctgcttcctcccctggctggtcaaggtcccgtcagaacacgagcagctgcgg
gctcgccagatcaccgcacagcagatcaacaagctggaggagatctggaaggagaaccct
aatgccaccctggaggacctggagaagccaggtgtggatgaggagccccaggctgtgctg
ctgcggtacgaggatgcctaccagtaccagaacatcctggggccgctggtcaaactagag
gctgactatgacaggaaactgaaggagtcgcagacccactccaatataacagtgcgttgg
gacttgggtctgaataagaagcggctggcgtacttcaccatgcccaagactgacagtgac
atgcgcctgatgcccggagacgagctccgcatcaggtatgaaggagagcttgggccaaag
tggaaggaggttggacatgtcgtcaaggttccagataactacacagaagacgtgtgtatt
gagctgcgcagcaatgctggagcacctgtggatctaacccacaactttgccatcgacttt
gtctggaagtccacctcatttgacagaatgcaggctgccatgaagacatttgccgtagat
gagacgtcagtgtcagggtacatctaccacaagctgctggggcatgaggtggaggatgtg
gtgatgaaaactcagctgcccaaacgtttctcagctccagggctgcctgaactgaaccat
tcacaggtctatgctgttaaaactgtactgcagaggcctcttagtctcattcagggtcct
cctggtacaggaaagacagtgacatcagcctccatcgtgtatcacctggccaagcagaac
aacggccagatcctggtctgtgcgcccagcaacatcgcagtggatcagctgacagagaag
atccacaggacggggctgaaggttgtgcgtctgtgtgccaagagcagagaggcgatcgac
tccccagtgtcattcctcgcactccacaatcagatccgcaacatggagaggtcagaatgc
ctacctgaactgcagaagctgcagcagctgaaggatgagactggggagctttcatcagct
gatgagaaacggtacaggacgctcaagcgcaacgcagaacgtgaactcctccagcatgca
gacgtgatctgctgtacctgtgtgggggcaggcgacccccgtctgcagaagttccagttc
cgcacagttctggtggatgaaagcacccaggccacggagccagagtgcatggtgcccatc
atcctggggtgcaaacagctgatccttgtcggtgatcactgccagctgggccccgtggtg
atgtgcaaaaaggcggcgcgggcaggactctcgcagtccctatttgagcgcctggttgta
cttggcattcgaccaatcaggctgcaggtgcagtaccgcatgcaccctgctctcagcgcc
ttcccatccaacattttctatgaagggtcactgcagaacggggtaactgctgctgaacgc
accaagaaagggctggacttcccctggccacagcctgataagcccatgttcttctatgcc
accagtggacaagaggaaattgccagctcaggaacgtcctacctcaacaggactgaagcc
tccaatgttgaaaagatcaccaccaagttcctgcgggcaggggtcaagccagatcagatt
ggcatcatcacaccatacgaaggtcaaagggcattcgtggtgcagtacatgcagtttggt
gggcagctccacaccaagctgtatatggaagtggaggtggcgagtgtggatgcattccag
gggcgagaaaaggacttcatcatcctgtcctgtgtgagggccaacgagcatcagggcatc
ggcttcctgaaagaccctcgacgacttaacgtcgcccttacaagagcaaggtatggcatc
attatcgtcggaaaccccaaagtcttgtccaagcaacctctgtggaataacctgttggtg
gattacaaggaacagaaggtgctggtagaaggccccctgaacaacttgaaggagagcatg
gttcagttcagcaaacctcgcaagctggtgaacacgaccaaccccggagggcgcttcatg
tccacggccatgtgggacgctcgggaagctctcatccccgggggagcatacgacaggtct
ggggccttcaatggaggtccgggctatggcagtaatgactactaccgaccacacgaccag
atgagtatgatcagcaatgaacactcccaggcagcaggcatggccttacccattcctgtg
gggatgttcatgcccccagcccacccaccgggaccttactacgggcagggtgtcccaggc
agaccacctatgaatcgtgggcccaacaggaagggtgggcgtggtcagcggcaacagaag
aacacctacaacagctacaactccatgcagagtcagtccagccaggacgcttcccagccg
ttctcgcaaggtccgctgacccagggtcacctgtccatgtcccaaccatcccagatgggt
cagtctggcctgtcccagccaggcctgtcccagcctgaactctcccaggatagctacatg
ggtgatgagttcaagtcccaggcagatgctgtcttgtcacaagactccacttaccaaggg
gacagggcataccaacatgcaggattctcccagtattga
DBGET
integrated database retrieval system
