Branchiostoma floridae (Florida lancelet): 118409910
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Entry
118409910 CDS
T01074
Name
(RefSeq) spatacsin-like
KO
K19026
spatacsin
Organism
bfo
Branchiostoma floridae (Florida lancelet)
Brite
KEGG Orthology (KO) [BR:
bfo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bfo03400
]
118409910
DNA repair and recombination proteins [BR:
bfo03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
118409910
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Spatacsin_C
Motif
Other DBs
NCBI-GeneID:
118409910
NCBI-ProteinID:
XP_035667181
UniProt:
A0A9J7KNG1
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Position
2:22125699..22144435
Genome browser
AA seq
1881 aa
AA seq
DB search
MALQCLVDKDLPQAWKLLANMGYDVTEQLHRICLYTPNRTLRDFLVEELMKSGSLSAEEQ
SMVQFVQQVESLYTCQSFQSAKAFLQETATKRDPLQAVSQDLTAQASEFLSLHLQCDEIG
GAGPMNCENSSYAHLVLEWVRHWDQQTRERVLLDRMLAMDRREENVSKNISCESTWAYLT
SHHMWNSLLQWIQASFPLEEEKGKVVTFTLQAPLTLELVSQLGSCTPVLRDRILDELARR
GQFVTDELSKFEDLLRRLARTHQAISHPHIMEGEPVKSLSVPDYHHLFITYCVEKQLPNL
LYFYLDFYGLQKEDGSLCIPADCAPWVDMLVQFRHTASSYTDPSAVFQASLANARVLLGA
DSVTVQTLLEEGRILMALSTLMYAPENITQALTAPASDADKQWKICPTVLKRSLTAHPKL
QSVLFPTHPLGTVPPQDITLYQLLQRNCPFDPSRLFGWQEMNTLSSGSDCLQDMPHFSHQ
ELVSQYAHTEDLQFTYYLRRGRPSFAFAKFLSAEMEARGSLSQRRLLRASLKAYCLALRN
FTQPAITASCVLFLEMLGVDSTKLRVDVQTANTVLSHRVDSMELSGQRRQDMERQQARDI
TYMFLECVRGKKRAGERILQWLEDATSQHIDKLRLERDSTAASQQWALPVSFCVIHYLPY
TCVFLEDCAKADNWLQFTCFVQTHQYPKERVLKLTGKFSSPHLAEHLKLAFDSLKYTAGS
PLKSRHILFSGSDVMGSDGARKKTEEGGKPEGQSGGKDVRSKFYMRMGLGRGKDSALSTV
DENKPAFSEPFHTPSTVSTIKRQKSPKAVSSTDGSEREDEDIRVPSTELQDKAESATVSS
VETAPPADGTVTVSAEQKEVDPSSCPDDLFSVLFKCQNTSCPWRSLLAHAVALTAPILAV
LAACYEECQLLDCLCVWLVTSLPPSSSVSATANIPTTQWHCWCLQDLDRIILVAMGTKHI
KTLARGFQIFQTESPLVPLFEFAEAFAIKKEYSSSHLHLHKFKDILGTTRKNPEGRSSTV
IRTFGTIEWLESVAVSVFSKLVSGTPHHECGLLLGVLADTAIQRAFTREVPDYVRLDQLN
QLLKETGVRMCVWRMMDSTSPEYQQECQKVLVSLQDRKQFEVARQFARLAGLPTGSITVQ
ELLEDLSQLKRSSLWLQESARVGFWRQCENKLRRDHTPAAMATDFFQTQAEGLVVEVSDS
EDIKVLSNAWEKALLLSMAHRWLASDTDQPASPEMLENLEERMWKSCIQAEVEKEEGGSS
VITMCTLLGTQTDYRQELLQTYGKMPMESHLKEGLLTTEKECRALDSIIGKLLDQGNICQ
ACKLAVQFQFYSQDLCIILTCLRLVHGTTLVEDIPDRMKVLSASGPRRKIMSLSQSLPRS
ISMSSISSHASTLSGWTTVDVDDVTNTMEVLADCCVQGKDCCNRILAGYKVAQSLDLSFQ
KVVSSEEFIILHDLLVSDISHKLRLAKDFIQYNHMGEQQVSGFLADAILHSLKVFTGETA
PEADSPRTASELVFHPSDGTEGFLKLTKLCSDPAILGNMLLDRATSLEGSLLDTSRGAFS
VQVELLIRAHDCHTLCCNMEGISSTLKTARSLTTTLAQAGEFALMIRLLTGIGRFSEMTY
IFDTLRKYHQFELLFRKGIDKEDKLKLALLDYLKRYHPTDKDTYTMVCLSFSMYREIAEM
METEAHRSLKKLERITMEQTPQMQSSLQNIVTFFSDAAESYAKEECLRHASSCIQQARLV
ALQLHLLGQGCRVINLEGKDVVKFISQHGKFLDALIVAEAYGKQSEWSSALYNNVVLSGD
FHYLDDYLTHMSLNSGMFVDIVGRYRREGSKSSQVTGNLKKLLGYCREVHITYRLAAEMG
FNDLCVQLLEGDGGAYLRDVV
NT seq
5646 nt
NT seq
+upstream
nt +downstream
nt
atggccctacagtgtctggtagataaagacttaccacaggcatggaaactactggccaat
atgggttatgatgtaacagaacaactgcatagaatctgcttgtacactccaaacagaaca
ctgagagactttttggtggaagagctcatgaagtcaggttccctgtctgcagaagaacag
tctatggttcagtttgttcaacaagtggaaagtctgtatacatgtcagtctttccagtct
gccaaggccttcctacaagaaactgcaacaaaaagagaccctttgcaggctgtttcacaa
gatctgacggcccaggcctcagagtttctgtcgctgcacctccagtgtgatgagataggg
ggagctggtcccatgaactgtgagaactccagctatgcccacctggtgctggagtgggtg
cgtcactgggaccagcagacaagggagagagttctgctggacaggatgttggcaatggac
aggagagaggaaaatgtcagcaagaatatcagttgtgagtccacctgggcctacctgaca
tcccatcacatgtggaacagccttctacagtggatacaggccagtttccctttggaagaa
gagaaagggaaggttgtcaccttcacactgcaggctccactcacactagagttggtcagt
cagcttgggtcctgcacaccagttctgagggacaggatactggatgaacttgcaaggaga
ggacagtttgttactgatgaactttcaaagtttgaagacctcctgcgaagattagcccgg
actcaccaggccatctcacaccctcacatcatggaaggggagcctgtgaagagcctgtct
gtaccagactaccatcatctattcatcacatactgtgtagagaaacagctccccaacctg
ctgtatttctatctggacttctatggtttacagaaagaagatgggagtctgtgcatccct
gctgactgtgctccatgggtggatatgttggtacagttcagacacactgccagcagttac
acagatccctctgctgttttccaagccagtctggccaatgcccgtgtgttgctgggggca
gactctgtgactgtgcagactttgttagaggaggggcgaattctcatggccttatctacc
ctgatgtatgcacctgaaaacatcacacaggcactgactgcaccagcctctgatgctgac
aagcagtggaaaatttgtcctactgttctgaagcgctccctaactgcccatcctaaactg
cagtctgtcttgttccctacccacccattgggcacagttcctccacaagacatcacactt
tatcagttacttcagcgaaactgcccctttgatcccagtcgactatttggttggcaggaa
atgaacacactcagctctggatcagattgcctccaggatatgccccacttctctcaccag
gagttggtttcccagtatgcccacactgaagacctgcagttcacctactacctgcgcagg
ggcaggccttcttttgcctttgcaaagtttctgtcagcagagatggaagccagagggtcg
ctctctcaaagaaggctcttgcgggctagtttgaaagcatattgcctggccctgagaaac
ttcacccagccagctatcacagcctcgtgtgtgctgttcctggagatgctgggggtggac
agcaccaagttgcgggtggacgtacagacagctaacaccgtgctgtcccacagggtggac
agcatggagctgtctggacagaggagacaggacatggagagacagcaggccagagatatc
acatacatgtttcttgaatgtgtccgtgggaagaaaagggcaggagagcgcattctccag
tggctagaagacgcaacatcccaacacattgacaaacttcgactggaaagggacagcaca
gccgccagccaacagtgggccttacctgtcagcttctgtgttattcactacctcccctac
acctgtgtgtttctggaggactgtgccaaggctgacaactggctgcagttcacctgtttt
gttcaaacccaccagtatcctaaggagcgggtcttaaagttgactgggaaattcagcagt
ccacatcttgctgagcatctcaagctagctttcgactctttgaaatacactgcaggctcc
cctttgaagtctaggcacatcctgttctcaggtagtgatgtgatgggcagtgatggagcc
aggaagaagaccgaggaaggtgggaaacctgagggccagtctggagggaaggatgtcagg
agcaagttctacatgagaatgggactgggcaggggaaaggacagtgcactgtccactgta
gatgagaataagccagccttttctgaaccattccataccccttccactgtgagtaccatc
aagaggcaaaagtctcccaaagctgtgagcagtacagatgggtcggagcgggaggatgaa
gatataagggtacccagcacagagctgcaggacaaagctgagtctgccacagttagctct
gtggagacggcacctccagctgatggaactgtgacagtttcagctgaacagaaggaggtt
gacccttctagctgtcctgatgacctcttcagtgtgctgtttaaatgtcagaataccagc
tgtccatggaggtcgttgctggcccatgctgttgccctgacagctcccatactagctgtg
cttgctgcctgctatgaggagtgccagctgctggactgcctgtgtgtgtggctggtgaca
tccctccctccctccagctcagtctctgctacagccaacatccccaccacacagtggcat
tgctggtgcctgcaggacttggataggatcattctggtggccatgggaacaaaacacatc
aaaacactggcaaggggattccagatcttccaaactgaatccccccttgtgccattgttt
gagtttgctgaggcttttgccatcaagaaagaatactcttcatcccacctgcaccttcac
aagttcaaagacatcttgggaacaaccagaaagaacccagagggcagaagttcaactgtt
atcaggacatttggtaccatagagtggctggagagtgttgctgtctcagtgttcagcaag
ctggtgtcaggaacaccacatcacgaatgtggtcttcttcttggagtgttggcagacact
gccatacaaagggcttttactagagaagtgccagactatgtaaggctggaccagttgaac
cagctgctgaaggagacaggagtgaggatgtgtgtgtggaggatgatggacagcaccagc
ccggagtaccagcaggagtgtcagaaggtcctggtcagcctgcaggacaggaaacagttt
gaagtggctcgacagtttgccaggctggccggactgcctacaggcagcatcactgtacaa
gagctcctggaggacctgtcccagctcaagcggtccagcctgtggctgcaggagtcagca
cgggtggggttctggaggcagtgtgagaacaaactcaggagagaccacacccctgctgcc
atggcaacagacttcttccagacccaggcggagggcttagtggtggaggtgtctgattca
gaagacataaaagtgttgtccaatgcatgggagaaggccctgttactgagcatggcccac
cgttggcttgcctcagatacggaccaacccgccagccctgaaatgctggagaatctggaa
gagaggatgtggaagagttgtatacaggctgaagtagagaaagaagagggtggctcctct
gtcattaccatgtgcacacttctgggcactcagactgactacagacaggaactgctgcaa
acttatggcaagatgccaatggagagtcatctcaaagagggtcttctcacaacagaaaag
gagtgcagggccctggactccattattgggaagttactggaccagggtaacatctgccag
gcctgtaagctggctgtacagttccagttttacagccaggatttgtgcattatcctcaca
tgtctcagactggttcatggtaccacactagtggaggacatccctgacaggatgaaagtc
ttatcagcgtctggccctcggaggaagatcatgtcattgtcccaatccctgcccagatcg
ataagcatgtccagtatttccagccatgccagcacactgagcggctggaccacggtggat
gtggatgatgtcaccaacaccatggaggtgctggctgactgctgtgtgcaaggcaaggac
tgctgcaacaggattctggcagggtacaaagtggcacagtccctggatctgagtttccaa
aaggttgtgtccagtgaagagttcatcatactacacgaccttctggtgtcagacattagt
cacaaactgaggctggctaaagacttcatccagtacaatcacatgggagaacaacaagtt
tcaggattcctggcagatgccatactccattccctcaaggtcttcacaggagaaactgct
ccagaggcagactccccccgtacggccagtgaactggtgtttcacccgtcagatggtact
gagggcttcctgaagctgaccaagctttgctctgaccctgccatactgggcaacatgctg
ttggatcgtgctacttctctggaggggtcactactggatacttctaggggtgcattttct
gtgcaggtggagctgctgatcagggcccatgactgccacaccctctgctgtaacatggag
ggaatatcctccaccctgaagactgcccgcagcctgaccaccaccctggctcaggccggg
gagtttgccctgatgatacggttactgaccggcatcgggcggttcagcgagatgacctac
atattcgacaccctgagaaagtaccaccagtttgagctgctcttcagaaagggtattgac
aaggaggataagttgaagcttgccctgttggactatttgaagaggtaccaccccaccgac
aaggatacctacaccatggtgtgcctgagtttctccatgtacagggagatagcagagatg
atggagactgaggcacacaggagcctcaagaaactcgagagaatcactatggagcaaacc
cctcagatgcaaagcagtcttcagaacatagtgacattcttcagtgatgcagcagagagc
tacgcaaaggaggagtgtctccgccacgcctcctcctgtatccagcaggcccgtctggtt
gccctgcagctccacctgctggggcaaggctgcagggtcatcaacctggagggcaaggat
gtggtcaagttcatctcacagcatggcaagttcctggatgcattgatagtagcagaggcc
tatggcaagcagtcggagtggtcctcagccctgtacaacaatgtcgttctgtccggagac
ttccactatctggacgactacctgacacacatgagcctgaacagtggcatgtttgtagac
atcgtggggaggtaccggcgggagggcagcaaatccagccaggtgacaggtaacctgaag
aagctgctggggtactgcagggaggtgcacatcacctacaggctggctgcagagatgggg
ttcaacgacctctgtgtgcagctgttggagggagatggaggggcatacctgagagatgtg
gtataa
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