Branchiostoma floridae (Florida lancelet): 118409911
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Entry
118409911 CDS
T01074
Name
(RefSeq) tetratricopeptide repeat protein 37-like isoform X1
KO
K12600
superkiller protein 3
Organism
bfo
Branchiostoma floridae (Florida lancelet)
Pathway
bfo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bfo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
118409911
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bfo03019
]
118409911
Messenger RNA biogenesis [BR:
bfo03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
118409911
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_19
TPR_1
TPR_16
TPR_2
TPR_8
TPR_CcmH_CycH
TPR_14
TPR_11
TPR_12
TPR_17
TPR_30
ARM_TT21_C
ARM_TT21_5th
TPR_MalT
ANAPC3
TPR_9
TPR_10
ANAPC8
Alpha-E
DUF7017
TPR_20
TPR-S
NPHP3_hel
NatA_aux_su
Motif
Other DBs
NCBI-GeneID:
118409911
NCBI-ProteinID:
XP_035667182
UniProt:
A0A9J7KNC8
LinkDB
All DBs
Position
2:22208799..22222876
Genome browser
AA seq
1566 aa
AA seq
DB search
MSSKETKAALKAAREAIRKKEYKEALKHCKDVLKQDKNNYHALVFVGVAAAELDQPDQAQ
AAYRRAAEAEPDQLLAWQGLCGFYEKLNRPDQRQELSDVYSRLMKLCHSDKTKWQELAAK
QGDLLAKVGDVRKAVEVWREIIVAKEADDNDNVAEFWVKIITVLSQQKGLSIEDMDLLKK
AYSTVIKSGTVVGVDHRKHYEGYIRLLLENHLETAAQIEALCRDMASTHPDSTFPLQTLC
LLGIEDDSVSEATLASCTKLQSLDPDSSAARLLQGFHLLHREPARARQLLQTGVGSRRDC
VYGWLHLAQVQVKLHDCGGAIDSARQGLKVLEKLQSVKNRDTVQRKLTLLLAESLTGSNL
PANLTEALHLYTQEAEKEPSCQQAVQGLCQTYIKLGDLDKAEKLCYQAIKSDATRHTMVA
LLGLVFSRQGKYEEAEEQLKKAVELDSEVALYHFLLGQLYWIMGDETKKDKSKCMTSLLK
AAKLDPHHSDTFLYLGHYYRDVAGDVQRSKRCYQKAFDLDQSSEEAGAAFGDACIALGEE
EAGLKLYVSVTSKASAGTAKWAWLRLGLYQLKHGDGTQAVKSLQAALRADPKDPHCWECL
AEAYLSRGGYTGALKAFTKAAELNPEATYSLYQVAAIKQVLGQFPDAIAEYQIILEKDNG
YVPALKGLGETYLAQAREALNEYLNGRVVDASQSAILALAKGVSVRADLSCLWKLLGDAC
TLLHPLSADLVTVNVPGSLLRKGKEVAEDQVMGKRDVLALGGRCYGRALRLAEDCSSLWH
DLGLNYFYQAQEDSDKEASKGLVEKATQALKKAITLESGNHKHWTALGVVTASKEADNPE
LAQHAFIKSTQAEPNNVEAWTNLGALYLRYDQVELAHQTFKVAQSLNPSYVASWIGQALV
AETIGHEEAMDLFRHTTELGTHLEGGIGYANWVCATLQDTTNRNSDVYKYNIVQMGAVLA
ASLALSKYTDRVHSNPTAYNMLGLLLEHQGLLQGAERAFSCAVELLSGTGDQDKLNKALC
NHGRVLCAGGRFEEAVTQYRAVSPLGEFRDVCGLAHALYRAGKLEESYAAYEQAFQVAPS
DTDKSCVLAAMAMVAHKFEDVERAKTLLFRCSQLQPPSVHGLQALCALGLTNGDVTLASA
ALAELLKQGDDQRFLSDVSFLTACLCAAQGDNMAARNAILKNIHKYPSETKLWELLAAFT
LQQQPQHATAAHAAAQVPHTLTPTPTQEQALNLSLGKLAAGVHTRDRRTDGLVAAQKAVH
LYPGQLTSWLVLTAAVYANNVVSKVKGQGSYRKGADLGCTRVITALLEQPGQPENSPVMK
QWATVQTVSSLMELGRFEEAKNTCNKESTPSPPLSTLSAMADIAVKVTAGQPVDSVEQLR
TAVLSNPTAMAWQLLSSVYQSQGMVVAAEMCYRQSLQVATSPQGKTTALLRLAYLALLMV
QGKGADVERWKSLALEATNEALKIDPWCTTAQLLQGALYFSLKNIKLSKKTLERLLFKKQ
SKKTLERLLLQTSVGEDLTLSVTRLYLLKILLAKDDALKISELLKTAEEQEDPLFEKLKQ
IAGTYS
NT seq
4701 nt
NT seq
+upstream
nt +downstream
nt
atgtccagtaaggagaccaaagcagcgctgaaagcagctcgggaggctatcaggaagaag
gaatacaaggaggctctgaaacattgcaaggatgtcctgaaacaagacaagaacaactac
catgcgctggtgtttgtgggcgtggcagcagctgagttggaccagcctgaccaggcacag
gcggcgtaccggcgggcagcggaggccgaaccagaccagctgctggcatggcagggtctg
tgtgggttctatgaaaagctgaacagacctgaccagaggcaggaactgtctgatgtctac
agcagactgatgaagctgtgtcacagtgataaaaccaagtggcaagaacttgcagcaaag
caaggtgatctactggctaaagttggggatgtcagaaaggcagtggaagtctggagggag
atcattgttgctaaggaagcagatgacaatgacaatgtggctgagttctgggtcaagatc
atcacagtgttgtcacaacagaagggcctgtcaatagaggacatggacttgttgaagaag
gcttactccactgttataaagtctggtacagttgttggagtagatcacagaaaacattat
gaaggttacatccgacttcttctagagaaccatttggagactgcagctcagatagaggcc
ctgtgcagggacatggcctccacacaccctgacagcaccttcccactgcagactctgtgt
ctactggggatagaggatgactcagtttcagaggccaccctcgcctcctgtacaaagctg
cagtccctggaccccgacagttcagcagcccggctcctgcaggggttccacctgctgcac
agggagcctgcacgagccaggcagctgctgcagacaggtgtgggcagcaggagggactgt
gtgtacggctggctgcacctggcgcaggtgcaggtcaagctacacgactgtgggggagcg
atagactcagcaaggcaaggtttaaaggtcctggagaaactacaaagtgtgaagaacaga
gacacagttcagaggaagctcacacttctactagcagaatccctgacaggatccaacctc
ccagctaacctgacagaggcactccatctatacactcaggaagctgaaaaagaaccgtca
tgccaacaagctgttcaaggactttgccagacgtacattaagctgggagatctggacaag
gcagagaaactttgttaccaagccataaagtctgatgccacccgacacaccatggtggca
ctgctggggctggtgttctcacggcaggggaagtacgaagaggcagaggaacaactgaaa
aaggcagtggaattggacagtgaggttgccttgtaccacttcttgttaggacagttgtac
tggatcatgggagacgaaaccaagaaagacaagtccaaatgcatgacaagcttgctgaag
gctgcaaaactcgatccgcatcactcagacacattcttgtacctcgggcactactataga
gatgtggctggggatgtgcagagatcaaagaggtgctaccagaaagcgtttgatctggac
cagtctagcgaggaagctggggctgcatttggagatgcgtgcattgctttgggagaggag
gaggcaggattgaaactgtacgtctctgtaaccagtaaagcaagtgcaggtactgccaag
tgggcctggctgagactggggctgtaccaactgaaacatggggacgggacccaggctgtc
aagagcctgcaggctgcactcagggctgatccaaaagacccccactgttgggagtgtctg
gcagaggcgtacctgagtcgtggcgggtacactggcgccctcaaggccttcaccaaggct
gcagaactcaaccctgaggcaacatacagtctgtaccaagtagcagcaatcaaacaagtc
cttggacagtttcctgatgccattgcagaataccagatcattctggagaaggataatggt
tacgttcctgccttgaaaggcttgggagaaacatacctagcacaagccagagaagcattg
aatgagtacttgaatgggagggttgtagatgcatctcagtcagccatccttgctctggcc
aagggagtgagtgtgagagcagacctgtcatgcctgtggaaactgctaggggatgcctgc
acattgcttcatcccctctcagcagatttggtgacagttaatgtacctggatcactgctg
aggaaagggaaggaggttgctgaagaccaggttatgggtaagagagacgtcctcgctctt
ggtggcagatgttatggcagggcactgcgtctagcggaggactgctctagcctttggcat
gacctcggcttgaactacttttaccaggcccaagaggacagtgataaagaggcttccaaa
ggtcttgtagaaaaagcgacacaagctttgaagaaggcaataacactggagagtgggaac
cacaaacactggacagctctgggcgtggtgacagcttcaaaagaagccgataatcctgag
ttggcacagcatgccttcataaaatccactcaagcagaacctaacaacgtggaggcatgg
accaacctaggtgcactgtacttaaggtatgaccaggtggagcttgcccaccaaaccttt
aaggttgcacagtcactcaacccgtcttacgtcgcatcttggattggccaggcattggtg
gcagaaaccatcggacacgaggaagccatggacctcttccgacacaccacagagcttggc
acgcacttggaaggagggatcgggtacgccaactgggtgtgcgctacgctgcaagacacg
acaaaccggaacagtgacgtgtacaagtacaacattgtacagatgggagccgtgttggct
gcaagcctggctctgtcaaaatacaccgaccgcgttcactccaaccccaccgcctacaac
atgctggggctactgctggagcaccaggggttgctacaaggggcagaaagggcattttcc
tgtgcagtagaacttctgagtggaacaggagaccaggacaagctgaacaaggctctgtgt
aaccacggcagagtgctgtgtgcaggaggaaggtttgaggaggctgtgacacagtacagg
gctgtctcaccactgggagagttcagggatgtctgtgggttggcacatgctctgtatagg
gctgggaaactagaagagagttatgcagcctatgagcaggccttccaggtggccccctca
gacacagacaagtcctgcgtgctggcagccatggccatggtggctcacaagtttgaggac
gtggagagagccaagactctgctgttcagatgttcccaactccagccccccagtgtgcat
ggtctgcaggccctgtgtgcgctgggtctgaccaatggggatgtgacgctggcctctgcg
gcgctggcagaactgttgaaacagggagacgaccagcggttcctgtctgacgtgagtttc
ctcacggcctgtctgtgtgctgcgcaaggggacaacatggccgccaggaatgctatcctg
aagaatatccacaagtacccatcagagacaaagttgtgggagctccttgctgccttcacc
ctccagcagcagccacagcatgccacagctgcacatgcggctgcacaggtgccccacacc
ctgacccccacccccacacaagaacaggctttgaacctcagcctggggaagctggcagct
ggggtccacactagggacagacggacggacggactggtggcagcgcagaaggctgttcat
ctgtacccaggtcagctgacatcatggctagttctgacagcagcggtgtatgccaataac
gtggtgtcaaaggttaagggtcagggttcatacaggaaaggcgctgacctgggctgtacc
agagtgatcacagcactgctagaacagcctggacagccggagaactctcctgtcatgaaa
cagtgggctactgtgcagacagtcagcagtctcatggagctggggaggtttgaggaggct
aagaacacttgtaataaggagagtactccctccccacccctcagcacccttagtgctatg
gccgacattgccgtgaaagtcacagctggacagcctgttgactctgtggaacagctgagg
acagcagtgctgtcaaacccgacagctatggcctggcagctgctgtcatcagtgtaccag
agccagggcatggttgtagcagcagagatgtgttacagacagagtctccaggtggccacc
tctccacaggggaaaaccactgccctactaaggctagcctacttggctctactcatggta
cagggcaagggtgcagatgtggaaagatggaagtcattggcactggaggccaccaatgaa
gcactgaagatagacccatggtgcactactgctcagcttctacagggggcgttgtacttc
tctttgaaaaatatcaaactatccaagaagactctagaacgcctcctatttaagaaacaa
tccaagaagactctagaacgcctcctattacagacgtcagtaggagaggatctgactctc
tcagtgacaagattgtatctcttaaagattctcctggccaaggatgatgctttgaaaata
tcggagttactaaaaacagcagaagagcaagaggacccgttgtttgagaaactaaagcaa
attgcaggaacatatagctag
DBGET
integrated database retrieval system
