Branchiostoma floridae (Florida lancelet): 118410107
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Entry
118410107 CDS
T01074
Name
(RefSeq) collagen alpha-3(IX) chain-like isoform X1
KO
K08131
collagen type IX alpha
Organism
bfo
Branchiostoma floridae (Florida lancelet)
Pathway
bfo04512
ECM-receptor interaction
bfo04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
bfo00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
118410107
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
118410107
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
bfo00535
]
118410107
Proteoglycans [BR:
bfo00535
]
Extracellular matrix (ECM) proteoglycans
Others
118410107
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Laminin_G_3
Motif
Other DBs
NCBI-GeneID:
118410107
NCBI-ProteinID:
XP_035667507
UniProt:
A0A9J7KP22
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Position
2:25195366..25238452
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AA seq
1000 aa
AA seq
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MTVWASPMGWHMPYRLTGVRLEVLVLSAWLLLLPSAAQPDSGICPKIRIGEDDLPGFDLI
TQFSINGGRPLPGVRKVKGSSDFQTAYRITRQSDVRVSTREVYPNGLPDEFSFVSTFRML
GTTIKEKWDLWRINNAQNERQMGLRLDGENESIEFTALGRNGELQTVTFSNVPIFDRRWH
KLLLSVRLDGVTLYLDCKQFDDFPFGPIGEIDPSGETTIGRRVDDEESASVLFELQWLLI
HCDPSRAERDTCEELPSLSLEQEELFDKEDFCPRQCPAGPAGANGSRGAPGIPGPPGPIG
PAGPRGPGGPRGFPGVPGNNGQKGDKGHLGLPGLPGSPGPKGERGVPGYPGDAGDQGPPG
LTGRAGVPGFPGQKGDRGDTGARGPPGDSTLSKGEPGDQGRRGFPGEQGLPGLKGHKGER
GLVGRPGLDGNDGSRGVRGVMGPPGPRGPAGPPGLPGPPGAPMILPPDMEGSGIQRIQWL
RGPPGPPGPHGLPGPPGFPGPKGHKGDSGDNGIPGKNGFDGQPGPMGLPGAPGVDGRAGP
QGPRGDKGPEGQKGQKGNPGAMGLMGPPGEQGMRGLDGERGSMGPQGLKGTKGEPGRRGG
NGMMGPKGEPGMNGVPGRDGMNGFPGLKGEAGPIGPSGITGDKGPMGVPGQPGPIGPVGP
KGNPGLNGNQGPVGQRGPTGVQGPPGIDGIDGERGPMGYPGEKGDRGPQGIVGPIGPAGL
AGPMGMPGQKGDMGDPGPRGMRGPTGRDGSKGEPGMPGLDGIRGAKGDIGGIGPRGKEGP
KGDAGSVGPVGATGMPGQSGPAGPRGPPGVEGSRGFPGSQGPTGQPGRSPSEEEVLRICE
RAIDSHMKMLAANLAQQAAKRTVVMTRPGPPGPPGQPGPTGERGPVGISGPPGPQGNPGM
PGDRGSIGPSGPQGMPGDRGEPGYGIPGPIGAPGRAGRKGETGIGVPGNPGPPGPIGPVG
ATGALGQRGPPGSPGVCDPMSCLGLSPIMSNNKNKKGPGK
NT seq
3003 nt
NT seq
+upstream
nt +downstream
nt
atgacggtttgggcatctccgatgggctggcacatgccgtatcggttgacaggtgtaaga
ctggaagtccttgttctgtcagcatggctactgttgctgcccagcgccgcacaaccagac
agtggcatttgtccaaagataagaataggagaagatgacctcccagggtttgacttgata
acacaatttagtataaatggcgggcggccgctgcctggggttcgaaaagtcaagggctcc
agcgattttcaaacagcctatcgtattacaagacaatcagatgtacgtgtcagtacgaga
gaggtgtatcccaacggactacctgacgagttctctttcgtctccacattccggatgttg
ggcacgaccatcaaggagaagtgggacttgtggagaatcaacaacgcgcagaacgagaga
caaatggggctccgcctggacggggagaacgaatccatcgagttcacggctctcgggaga
aacggggagctccaaactgtgaccttctcaaacgtgcccatcttcgacagaagatggcac
aagctgctactgtccgtccgattggacggcgtcactctctacctggattgtaaacagttc
gacgactttccctttggaccaataggagaaattgacccttcgggggagacgacgattgga
cggcgggttgatgacgaggagtctgcctccgtcctgtttgaacttcagtggttactaatt
cattgcgatccgtcaagagccgagagagacacatgtgaagaattaccgagtttaagtctc
gagcaggaagaactattcgacaaagaggatttttgcccgagacaatgtccggctggtccc
gccggcgcgaacgggtccaggggcgctccgggcatacccggccctcccggtcccataggc
ccagctggcccgcggggccccggtgggccacgtggatttcctggcgtacctggcaacaac
ggacaaaagggcgacaaggggcacctgggcctgcccgggttacctgggtctccaggaccg
aagggtgaacggggggtcccggggtatcccggtgatgcaggtgatcaggggccgccaggt
ttgacgggtcgtgccggagtaccagggtttccaggtcagaagggagaccgcggagacacg
ggagcaaggggaccacctggggactcgactttatctaagggagaaccgggcgaccaagga
aggcgtggatttcccggggaacaagggctgccgggattgaaggggcataagggtgaacga
gggctagtcggtagaccagggctggatggaaacgacggctcacggggtgtgcggggcgtc
atgggaccgcctggccccaggggaccggccggccctccaggactcccgggtcctcccggt
gctcccatgattcttccacctgacatggaggggagcggcatccagagaatacaatggctg
cggggcccaccgggaccacccggacctcacggccttcccgggccccctggcttccccggg
ccgaagggtcacaaaggagactcaggagacaacggcattccggggaagaatgggtttgat
ggacaacccggacccatgggtctccctggggcacctggtgtggacggacgagctggacca
caggggccaaggggtgacaaaggaccggagggacagaaggggcaaaagggtaacccgggg
gctatgggtctgatgggaccgccaggtgaacagggcatgcgtggtcttgatggagagagg
ggaagtatgggaccacaaggcctcaaaggaacgaagggtgaaccaggcaggaggggcgga
aacggaatgatgggacccaagggagaacctgggatgaatggagtaccaggcagagacggc
atgaatggattcccaggtttgaagggagaggctgggcctatcggaccatcgggtatcact
ggagacaagggtcctatgggtgtacctggacaaccaggacccattgggccagttggaccc
aagggaaaccctggcctgaacggaaaccaaggaccagtgggacaacgaggacctacaggt
gttcaaggccctcctggtattgatggaattgatggggagagaggtccaatgggataccca
ggagaaaagggagacagaggcccccagggtattgtgggaccaattggtcctgcaggcttg
gctggccccatgggtatgccaggacagaaaggtgacatgggtgatcctggaccaagggga
atgagggggcctacaggaagggatggctccaagggagagcctggaatgcctggtctggat
ggtatccgaggggcaaagggtgatattggtggcattggacccagaggaaaggaaggacca
aagggagatgcaggctcagtaggccctgtcggtgccacgggtatgcctggacagtctgga
ccagctggacctcggggacctccgggtgtggagggttctcgcggtttccctggatcacaa
gggccgacgggacaaccaggaagatcaccatcagaagaggaagtcctgaggatatgtgag
agggccattgacagtcacatgaagatgttggcagcaaacctagcccagcaggctgccaag
cgcacggtggtgatgacccgccctggaccacccggcccgccgggccagcctggtcctacc
ggagagcgcgggcccgtcgggatatcagggccacctggaccacagggaaatcctggcatg
ccgggagacagaggatccattggaccatcagggccccaaggcatgccaggagaccgcgga
gagccaggctacggaataccaggtccgatcggagcacctgggagagcaggacggaaagga
gagactggcatcggtgtccccggcaaccccggcccccctggtcccatcggccccgtcggt
gctacaggagcactcggccagcgtgggccccctggcagccctggagtgtgcgatcccatg
tcctgcctaggcctctcaccgatcatgtccaacaacaagaataaaaaagggcctgggaaa
taa
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