Branchiostoma floridae (Florida lancelet): 118411237
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Entry
118411237 CDS
T01074
Name
(RefSeq) cadherin-23-like isoform X1
KO
K06813
cadherin 23
Organism
bfo
Branchiostoma floridae (Florida lancelet)
Brite
KEGG Orthology (KO) [BR:
bfo00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
bfo03037
]
118411237
04515 Cell adhesion molecules [BR:
bfo04515
]
118411237
Cilium and associated proteins [BR:
bfo03037
]
Primary cilia and associated proteins
USH complex and associated proteins
118411237
Cell adhesion molecules [BR:
bfo04515
]
Cadherins
Major cadherins
118411237
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_FAT4_N
Cadherin_CELSR2_9th
Sde0182_C
PCDH15_12th
Motif
Other DBs
NCBI-GeneID:
118411237
NCBI-ProteinID:
XP_035669276
UniProt:
A0A9J7KRV1
LinkDB
All DBs
Position
3:21990383..22023231
Genome browser
AA seq
1856 aa
AA seq
DB search
MLWRQAVVLGMVCIILRTGAQANQPPIFTQGMDYQQIPEDTAVGSTVYTLSATDADGDTL
TYGVSGQVSNNLFIVDPSSGVVTLKTPLDRELTDEYQITVTVSDGTNPQVVQTPTIFITD
ANDNSPVFQGIPYEVSVNESDVSQTSIFRVTATDADQGIGGTVSYFLEAGDESKFEVDRP
TGVVNLKEELDYEESSVYQLRIRAQDGGGSYQGTQVFQSSTTVLIVNVVDQDDQPPLFLG
QPFSTQVNEDTPLGTSIITINARDGDYGIDNPIVYSTEGDDGTFSIDSITGVISLARTLD
RESKTDEGGVYSFDVQARENSIEARTTNTSVRITVVDVNDQIPTFYNGTGNSPQNYFTAT
IPEGTSAGIPLGGLDMRVEDNDEGDNGRFTLTLDEEGSRYFEVVPSTVYGQAAVNIRVKN
SRLLDYETLQSVQFKVIAREDLAAEHYNSTATVLVTLEDTNDNSPVFNQSKYDLSVAENS
PDGTVVGTITATDLDSGEFAEIAYSLQGSGSEKFAVNNLTGVITVAKGDELDRETIPFYF
LTLLAEDGGGRASNVQLQITLLDVNDEAPTFQRSSNKVYIQEDAAAFDEPLQVLAVDRDE
GTNKVIKYSIISGNDHDNFTIDEDSGVIDLTQPLDYEALGGGDEFHLVVQAKDEGQPPLN
STTTVIVVVEDINDNDPFFLEDMVNTTVSEAAAADTLVVKLNATDEDSGFNGRIDYRIAS
GSKDKFYITNDGEIKVSPGGRVPLDRDLYGDGYTLIVTATDRGNPDQKTGTATVFITIED
INNKDPVFVSSEKTDTLPEYPNTTYPSKLADMPAVDSDIDSSLEYTITSIMAQDENGQVV
TVGSNLFNITSKGEVWVNGELDREFAEDYVLRLEVNDTAAPWPGEQTATATLTIILQDVN
DNAPKFSSDEIEQNIQEQLPIGQLLATITANDPDKGPNGEVMFSLTGTNLLAIDSSTGQI
KVNSTIDREYGQWLNFTVTAKDGGNPPKSTDKSYNWRVSDTNDNDPKFEQPSYSGEVSEN
ATVGTSVLTVTATDADFGQFGAVRYSLVPVDSNFTIHPDRGEISVDGKLDREMEEQVTLT
VTATDNPGGSENNQREKSVEVTIKLLDVNDEAPTFSQNIYTEYIQEDEVAGTSIITLQAV
DRDSAGPNSQIEYTILAGNEAGVFTVGRDSGIMTTLKPPGLAPGQDINVTVLASDKGSPI
RSSTTIVRVKILDTNDNAPIFVYPAANASTTVLENEPVGTFVVRVLATDEDEAQNGNVTY
YFDPSDEYNGDRANFTLDPISGNLTTKVVLDREEKAQYVLYIQARDAGFPPLTGATVIRV
HVGDVPDTDPVFKPQLDPVTGEVVPQTLTVGENLVPGTVVGFVLNAFDADEGATIFYYIV
GGDPNGYFDLNKNTGEIKTTRTFDREAEASYTLVVKASNNASYSVPGGSRRRKRDIAYDP
ADPTLQEVIIEIGDQNDEPPRFTKKEYTAGITTEFKFGDAVTVVTAIDPDAGNNSVVTYT
ITRQLYFDRDSEGNLMSTPKDATGTFNIESDTGQIVTGKVFSSDEKGYYTLNVSARDIGG
QSDNASVEIYLLREDQRVKIVFQRTPDEVRAFKDEFAALLSNITGAIINVDDIQFHTTDD
QQTDELRTDMFIHGVDRTTGLIMDKERLIELIDANYEFLVRLLRDYNVVEYQVAVPQVQD
VTYDNLIIAIAAMAGILVISIALIATVCVCWTSRLKRELRASQAMLYSTKDVIPDLSEKD
ALQVPGTNQFAIDGSNPMWGKEVYVNEIAEESDSDDSLDDNEVDVKSPQAPSAPPRDDYA
DEEITVNLYNDEYDNYTKFPPGYANGNFILDAALKEHEDAKRNGPHRNFSLETTEI
NT seq
5571 nt
NT seq
+upstream
nt +downstream
nt
atgttgtggagacaagcagttgtgctgggcatggtctgcattattcttagaacaggtgca
caggccaaccagcccccaatcttcacacaaggcatggactatcagcagattcctgaagac
acagcagttggatctaccgtgtacaccttgagtgcgacagacgcagatggtgatactctg
acgtatggagtctcaggacaagtctccaataacctgtttatagttgatccaagttctggg
gtcgttactttgaaaacaccattggacagagagctcactgatgaataccagatcactgta
acagtttcagatgggacaaatccacaggtcgtacaaaccccaaccatcttcataactgat
gccaatgacaacagcccagtgttccagggtattccctatgaagtgtctgtcaatgagagt
gacgtttcacaaaccagcatattcagggtgacggcaactgatgcagaccaagggattggt
ggaactgtgtcatactttctagaggctggagatgaatcaaagtttgaggttgacagaccg
actggagttgtgaacttaaaggaggagctggactatgaagaatcatctgtttatcaactt
cgaatcagagctcaggacggaggaggcagctaccagggaacccaggttttccagagcagc
accactgtactgatagtgaatgttgttgatcaagatgatcagcctcctctgtttctcggg
cagcccttctcaacacaagtgaacgaagacactccactgggtacatccattataaccatc
aatgctcgagatggggactacggcatcgataatccaatcgtttattccacagaaggggat
gatggcaccttctccattgactccatcactggagtgatcagtcttgctaggaccctggac
agggaaagcaagacagatgaaggaggggtctatagctttgatgtgcaggccagagaaaac
agcattgaagcccggacaacaaacacgagtgtgcgcatcaccgtagtagatgtgaacgac
cagatcccaacgttctacaacggcaccggaaactctccccagaactacttcactgccacc
attcccgagggcacgtctgcaggaattcccctggggggtctggacatgagggtggaggat
aacgatgagggtgacaatggccggtttaccctgacacttgacgaagaaggcagcaggtat
tttgaggtggtgccgagcacagtttatgggcaggcagcagtgaacatccgggtcaagaac
tccagacttttggactatgagacactgcaatctgtgcagttcaaagtgattgctagggaa
gacctagcagctgagcattacaacagcactgccacagttctggtgacattggaggacacc
aacgacaactctcctgtgtttaaccagtctaagtacgacctgtctgtagctgagaactct
ccagacgggactgttgtgggaacaatcacggcaactgatctggactctggagaatttgca
gaaattgcatacagtctgcaaggcagtggaagtgaaaagtttgctgtcaacaatctaaca
ggagtgataacagttgccaagggcgatgagttggacagagagaccatcccattctacttc
ctcaccttgctagcagaggacggagggggccgtgcctccaacgtgcaacttcaaatcacc
ctattggatgtcaatgatgaagcacctactttccagcggtcgtccaacaaagtctatatc
caggaggatgctgccgcatttgacgagcccttgcaagttctggctgttgacagggacgag
ggcacaaacaaagtcatcaagtactccattatttctggaaatgaccacgacaacttcacc
atcgatgaagacagtggtgttattgacctgacacagccactggactatgaggcactcggt
ggtggggatgagttccacctggtagtacaggctaaagatgagggacagccacccttaaac
tctacaacaactgtcattgttgttgttgaggacataaacgacaacgaccccttcttcctg
gaggatatggtgaataccactgtgtcagaggctgctgcagctgacacgttggtggtaaag
ttgaatgcaacagacgaggacagcggtttcaatgggaggatagactaccgcatcgcttca
gggtccaaggacaagttctacatcaccaacgatggggaaatcaaggtgtcaccagggggc
agggttcccttggatagggatctatacggggacggttacacgctcattgtcaccgctacc
gaccgcggaaatcccgatcagaaaacaggcaccgcgaccgtcttcatcaccatcgaagac
atcaacaacaaggatccggtttttgtttcttcggagaagaccgacaccctgcccgagtac
cctaacaccacgtacccatccaaactggccgacatgcccgcagtggactctgacatagac
agcagtctggaatacacgataacgtccatcatggcacaagatgagaacggacaagttgtg
accgttggctccaacttgttcaacatcaccagcaagggagaggtgtgggtgaatggggaa
ctggacagggagtttgcagaagactatgttctaaggctggaggttaacgacactgcagca
ccgtggccaggggagcaaactgcaacagcgaccttgacgatcatcctccaggatgtgaat
gacaacgctccgaagttcagcagcgacgagatcgaacagaacatccaggaacagctgccc
attggtcagcttttggccaccatcaccgccaatgatcccgacaaaggtcccaacggtgaa
gtgatgttcagcttgactggcaccaaccttctggccatagactcttcaacaggacaaatc
aaggtgaacagcaccattgacagggaatacggtcagtggctcaacttcaccgtgacagca
aaagatggtggcaacccacccaagtcaacagacaagtcttacaactggagggtttctgac
accaacgacaatgatccaaagtttgagcaaccatcatacagtggggaagtgtccgaaaat
gcaacagtgggaacatctgtgttgaccgtgacagcaaccgacgcagattttggacaattt
ggagctgtacgatactctcttgttccagtggatagcaactttactatccatccagacaga
ggggaaatttcagtggacggcaagctggatcgtgaaatggaggaacaggttaccctgaca
gtcacagcaactgacaatcctggagggagtgaaaacaaccagcgggaaaaatctgtggag
gtgactataaaattgctggatgtaaatgatgaagctccgaccttctcccagaacatttac
actgagtatatccaggaggatgaggttgcaggaacttccatcatcactctccaggcagtg
gacagagactcagctggccccaacagtcagatagagtacaccattttggctgggaatgaa
gctggagtgttcacagtaggtcgtgattcagggatcatgacaacattaaaaccaccagga
ctggctcctggacaagatattaatgtgacagtactggcttccgacaagggcagtcctatt
aggtccagtaccaccattgttagggtcaagatcctcgacaccaacgacaatgcaccaatc
tttgtctaccctgcagccaatgcctcaacaactgtcctcgagaacgagccagttggtacc
tttgtggtgagagtgcttgccacagacgaggatgaggcacagaacgggaacgtgacgtac
tattttgaccccagcgatgaatacaacggagacagggctaactttaccctggatcccatc
agtggtaacctcacaacaaaagttgtcctggaccgagaggaaaaggcacaatatgtgctg
tacattcaagctagggatgcaggcttcccccctctgacaggggcaactgtgataagagta
catgtgggggatgtgcccgacactgatcctgttttcaaacctcaactggatcctgtgaca
ggtgaagttgtcccccagacgttgactgttggtgagaacctcgtccccggaactgttgtt
ggctttgtgctgaacgctttcgatgctgatgagggagctacaatattctactacattgtt
ggaggggatcccaacggatactttgacctaaacaaaaacacaggagaaattaaaacaaca
agaacatttgacagagaagcagaggcaagctacaccctggttgtaaaggccagtaataat
gcgagttacagcgttccaggtggcagcaggagacggaaacgggacattgcatacgaccca
gcagatccgacgttacaagaggttatcattgaaattggagaccagaatgacgaacctcca
aggtttaccaagaaagagtatacagcaggtatcacaacagagttcaagtttggagatgct
gtaactgtggtgacggccattgaccccgatgctggcaacaacagtgtggtgacctacacc
atcacccgccaactctactttgacagagacagtgagggaaacctcatgtccacaccaaaa
gatgcaacgggaaccttcaacattgagtcagacacaggccaaattgtgacgggaaaggtg
ttcagcagtgatgagaaggggtactacaccttgaacgtctctgcaagggacattggtggc
cagagtgacaatgcctcagttgaaatctaccttctgcgtgaggaccaaagggtgaagatt
gtgttccagaggactcctgatgaagttagagcattcaaggatgaatttgctgcgcttctg
tccaacatcactggggccatcatcaatgtagatgacatccagttccacacaactgacgac
caacaaacagatgagttgaggacagacatgttcatccatggagttgatagaacaactggc
ctcatcatggacaaggaaagactcatcgagctaatcgacgcaaactatgagttcttggtg
cgtcttctacgggactacaacgtggttgagtaccaggtagccgtgccacaagtgcaggac
gtgacctacgataacctgatcatcgcgattgctgcgatggccggcatcctggtcatcagc
atcgctctcatcgcaacggtctgcgtctgctggacaagcaggctgaagcgtgagttgcgt
gcgtctcaggccatgctgtacagtaccaaggacgtcatcccagacctgagtgagaaggac
gctctgcaggtgccaggcaccaaccagtttgccattgatggatccaaccctatgtggggg
aaggaggtctatgttaacgagatagctgaagagtcagacagcgatgattccctagatgac
aatgaggttgatgtgaaaagtccacaggccccgagcgctcctccccgagatgactatgct
gatgaggaaatcacggttaacctatacaatgacgagtatgacaactacaccaagttcccg
cccggatacgccaacggaaattttatcctagacgcggccctgaaagagcacgaggacgcc
aagagaaacggtccccacaggaacttcagtttggaaactacagaaatatag
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integrated database retrieval system
