Branchiostoma floridae (Florida lancelet): 118411474
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Entry
118411474 CDS
T01074
Name
(RefSeq) pre-mRNA-splicing factor RBM22-like
KO
K12872
pre-mRNA-splicing factor RBM22/SLT11
Organism
bfo
Branchiostoma floridae (Florida lancelet)
Pathway
bfo03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bfo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
118411474
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
bfo03041
]
118411474
Spliceosome [BR:
bfo03041
]
Complex B
Other components
Prp19-related factors
118411474
Complex C
118411474
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
STL11_N
zf-CCCH_RBM22
RRM_1
zf_CCCH_4
Torus
RRM_occluded
RRM_YTH1
zf-CCCH_2
Nup35_RRM_2
zf-CCCH
zf-CCCH_4
RRM_3
zf-CCCH_10
zf-CCCH_PARP12
Motif
Other DBs
NCBI-GeneID:
118411474
NCBI-ProteinID:
XP_035669647
UniProt:
A0A9J7MJJ1
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Position
3:complement(30411000..30424241)
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AA seq
454 aa
AA seq
DB search
MATSLGANTYNRQNWEDSEFPILCQTCLGDNPYIRMTKEKFGKECKICQRPFTVFRWCPG
ARMRFKKTEVCQTCSKLKNVCQTCLLDLEYGLPVEVRDRALQLKDDVPKSDVNKEYYTQN
MEREIANTDGSKAVGTLGKAQAPSDMLLKLARTTPYYKRNRPHICSFWVKGECKRGEECP
YRHEKPTDPDDPLADQNIKDRYYGVNDPVANKLLKRYDNMPSLKPPEDRSITTLYIGGLG
DKITEQDLRDHFYQFGEIRSITMVARQQCAFIQFTSRPAAEMAAERTFNKLIINGRRLSV
RWGRSQAQGKDKKLEHSELDMSLAPVPGLPGALPLPPGEMTGSTPNYFNLPPQPQPPHSS
GQMLPPPPLGMPPPLPPGMAPPGMPPRGLMPGFRGPPPGLRPPGFQPPPMMPQGQGPPPP
MRGPAPIHYPSQDPQRMGSQAQQPPAPTQPPPKN
NT seq
1365 nt
NT seq
+upstream
nt +downstream
nt
atggcgacttccttgggtgcaaacacatacaaccggcaaaactgggaagattcggagttc
ccaattctgtgccagacatgcttaggagataacccttacatacggatgacaaaggagaaa
tttggaaaagaatgcaagatctgccagcgccccttcacagtgttccggtggtgtccggga
gcgaggatgaggtttaagaagacggaggtgtgtcagacgtgcagcaaactgaagaacgtc
tgtcagacctgcctgctggacctggagtatggtttgccagtggaggttcgtgatcgtgcc
ttgcagctgaaggacgatgtccccaagtctgatgtcaacaaggagtactacactcagaac
atggagagggagattgccaacacagacggctccaaagccgtgggcacgttgggtaaggcc
caggcacccagcgacatgctgctgaagttggcccggaccacgccgtactacaagaggaac
cgtccccacatctgctccttctgggtcaaaggtgaatgtaagaggggagaggagtgtccc
tacaggcacgagaagccaacagatccggacgaccctctggcagaccagaacatcaaggac
cgctactatggggtcaacgaccctgtggctaacaaactgctaaagagatacgacaacatg
ccgtctctgaagccgccagaggaccgttccattacaactctgtacataggggggctgggg
gataagatcactgaacaggatcttagggatcatttttaccagtttggtgagatcaggtcg
ataacgatggttgctaggcaacagtgtgcgtttatccagttcacgtcacggccggcggca
gagatggcagcggagagaaccttcaacaaactcatcatcaacgggcgccggctcagtgtc
agatggggtcgttctcaggcgcaggggaaggacaagaagctggaacactcagagctggac
atgagcctggcaccagtgccggggctacccggggctctgccactaccccctggtgagatg
acagggtcaacacccaactatttcaacctacccccccagccacaaccccctcacagctcc
ggccagatgctgccaccccctccgctgggcatgccaccccccttgccgccaggaatggca
ccacccggaatgccgcctcgcgggttgatgcccggtttcagaggaccgcctcccggactc
cggccgcccggcttccagccgcctcccatgatgccgcagggccagggtccgccaccaccc
atgcgcggccccgcccccatccactacccctcacaggacccccagcggatggggtcgcag
gcacagcaaccccctgcacccacccagccccctcccaagaactag
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