Branchiostoma floridae (Florida lancelet): 118412003
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Entry
118412003 CDS
T01074
Name
(RefSeq) collagen alpha-5(IV) chain-like isoform X1
KO
K06237
collagen type IV alpha
Organism
bfo
Branchiostoma floridae (Florida lancelet)
Pathway
bfo04382
Cornified envelope formation
bfo04512
ECM-receptor interaction
bfo04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
bfo00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
118412003
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
118412003
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
118412003
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
bfo04147
]
118412003
00536 Glycosaminoglycan binding proteins [BR:
bfo00536
]
118412003
Exosome [BR:
bfo04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
118412003
Glycosaminoglycan binding proteins [BR:
bfo00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
118412003
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
118412003
NCBI-ProteinID:
XP_035670450
UniProt:
A0A9J7KUT7
LinkDB
All DBs
Position
3:14033144..14099860
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AA seq
1231 aa
AA seq
DB search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NT seq
3696 nt
NT seq
+upstream
nt +downstream
nt
atggggacgttatgggacgcgacgaggatacacctcgccatcttcctactattagttgta
catgcaaatgctcaattttctagaaagaaaagttcgtcctgcgactgccctgagggtcct
gagggaccggccggaccacctgggcctcccggtttacctggcatggatggaatgatggga
atgaacggagagagaggaccacctggaccaaggggtggaccgggcagcaaaggtccgcca
ggtcccgccggaggcacaggagaaccgggaatgccgggtttcccaggaaagcaaggcccc
aaaggcatccctggcaacagaggtcaagctggtccccccggacctgctgggccaccggga
gaagcaggagagcctggtaacgagggcaagccaggcatgatgggaatggcaggcccacct
ggacctcagggactgatcggaccccctggcaaaacaggtcaatcaggaggacctggaagt
aggggactgccgggtccacctggtaacaatggcgggccaggcatgccgggattgaaaggt
cataggggattcccaggatcaccaggcccacctggtccaccaggaatggtcggaagagac
ggcaaagagggcaaggaaggcgatgctggaccgcctggacccgctggcccatccggccga
cctggagaccaaggacccgctggaaaatctggaagcccgggtcgccccggtagtatcgga
ccaccaggaccccctggcaattcgggtgaacggggaacccctggacctcctggcttccaa
ggagcaccgggcatggctggaaaagcaggcatccaaggaaaaaccggaaatgacggtgcc
cctggagccattggtccaccaggaccaccaggacaacgtggcattggaatgccaggacca
cctggacctcctggagaagggaaacctgggaaggacggtgataaaggatcagctggattg
ccgggcagacccggaatgccgggaagaccgggaccaccaggtaaccctggacagtcgaag
gaaggtccagaaggcccacctggtccacctggcccagccggtttaggaagaagaggaccc
cccggtccacctggacccccaggagcgatgagccaagcagcacggcaacctggtccccct
ggcctgcccggcgacagaggcagacctgggccgcctggcgagcagggatcgcccggacca
gcaggactacctggtcgtggcatcaaggggcaccaaggtatgccggggatgcccggccaa
cagggacaaccaggaccgccaggaccacctggaatcggagaagaaggacctccaggaaaa
caaggaaaggaaggtgaaccgggtattggtatgcccggcgagccaggacaaagaggtcca
cctggtccctcaggaaagctcggacgccccggtcagcccggaccgccaggacctcccggt
atcggacagcctggaaatgatggacaggcaggcccacctggtccacctggatctcctgga
ttcccaggctcacctggtgagggaaagagaggttcacctggaagatcaggccaacctgga
ccacctggaccaccaggagctgcaggaaaaccaggaataggaaaaccaggccgcacagga
gagccaggacctcgaggagacaagggtgatgatggcgtgggcacccctggcccacgtggt
cccccaggtctccctggtcttccagctccagctgtagacctatcagctcttgcaggtgca
cttgccaagcagatgccaagtccgaagggaatacgaggaccacccggtccaccaggttcc
cccggctcaccaggatcaggaggacgcggttcacccggccctccaggagaaccaggacct
cctgggcccatgtcacccgcaggagcaggtgggggacccccaggcccatctggcgcacca
ggcccacctggtccacctggcccgtctggacagggcatgcctggcccatccggcccccct
ggaccacttggcccgcctggacccggaggacctcccggaccacctggaactggactcaag
ggtgaccgtggtccccctggcccccctggaggagacggtactggcccaggccctaacgga
gggccgggacccaaaggagatcccggaccagggggaccccccggaccaggaggacctcca
ggacctaatggaccacctggaccacctggaccatcaggaattggattgccgggaccgcaa
ggtccacctggccctggaggaccaccaggaccgcaaggcgtcggactgaagggtgaccca
ggccccatcggcgggccagggcctcagggaccacctggtccaccaggtctaccagggatt
ggagagaaaggagacattggccagccgggagaaccaggggaacctggccaaaggggcccc
agaggacctccaggaatcggacagttgggaccacccggaccagcaggacctggtggacct
ccaggacctcctggtgttggcgtaaagggtgaggctggaccacctggcttccctggagct
gccggacctcctggacccggcggaccacccggagttggcacacagggtccgccaggtgcc
ctcggcccacctggtcctgctggaccaccaggagcaccaggccagacagatggtcctggg
acagtcggcccccctgggcccccaggacctctaggtccccctggaacgccaggacttccc
ggtgttggactgaagggagaaccaggagctggcggacctcagggaccaccaggtcctcct
ggtgttggactaaagggagagccaggtgtattaggaccccctggacctgcaggacctaca
ggtccacccggacagggcatacctggtgacgcaggacctcccggtctgcccggtctccct
ggcgctaggggattgcccggtttggacggactgcccggacctgtcggacaaggagggttc
gatttgctgacccgccacagccaaacggaccagattcccaactgccccgaaaatatgacc
aaggtctgggatggatacagtctgcttcatgtggaaggcaatgagcgagctcacgatcaa
gatttaggccgccctgactcctgtctaccgaggttcggcatcttgccattcttcagctgc
gagccggacgatgtctgcaagtacggctacagggacgacaagacctactggctctccacc
atcgagaggttcgaacaacagccccgagtgccggctgagggaacggacatccgacagtac
atcagccgctgtgcagtgtgtctgacaacaaacctggtgttagccttccacagtcagcgg
gcctcggtcaccccagactgtccggagggttggaggggaatctggactggatacagcttc
cttatgcacaccgctgcaggagaaggagggggtcaaccactaaccagccccggaagctgc
ttggaccacttccggtctgcaccattcatcgaatgcgttagcgatgtctgtgacgtgtcg
tccaaccagctcagtttctggctcatcgggatccccggtggagagagggaacaattcaac
cagccgcgcagagtcgtgggcagcttagaggttctcaggcaaagaataagtcgatgcagg
gtctgtgtttacaacggtggactgtacgaagatatcgttgctaaggaagctcctcctggt
gtaactgcaactggtgtttttaactttggcggctga
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