KEGG   Branchiostoma floridae (Florida lancelet): 118412242
Entry
118412242         CDS       T01074                                 
Name
(RefSeq) WD40 repeat-containing protein SMU1
  KO
K13111  WD40 repeat-containing protein SMU1
Organism
bfo  Branchiostoma floridae (Florida lancelet)
Brite
KEGG Orthology (KO) [BR:bfo00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:bfo03041]
    118412242
Spliceosome [BR:bfo03041]
 Complex B
  Other components
   Complex B specific factors
    118412242
SSDB
Motif
Pfam: Beta-prop_WDR5 Beta-prop_WDR3_1st WD40 Beta-prop_THOC3 WD40_WDHD1_1st WD40_Prp19 Beta-prop_TEP1_2nd WD40_CDC20-Fz Beta-prop_WDR3_2nd Beta-prop_WDR36-Utp21_2nd Beta-prop_EML_2 WDR55 Beta-prop_WDR90_POC16_2nd WD40_MABP1-WDR62_2nd EIF3I Beta-prop_CAF1B_HIR1 Beta-prop_WDR36-Utp21_1st Beta-prop_EML ANAPC4_WD40 WD40_Gbeta Beta-prop_WDR75_1st Beta-prop_RIG_2nd LisH_TPL NBCH_WD40 Beta-prop_ACSF4 Beta-prop_TEP1_C WDR90_beta-prop_4th Beta-prop_VPS8 Beta-prop_Aladin Ge1_WD40 Beta-prop_WDR41 Beta-prop_DCAF4 Beta-prop_Nup120_160 Beta-prop_EIPR1 Beta-prop_Vps41 Beta-prop_NUP159_NUP214 Beta-prop_IFT122_1st Beta-prop_NWD2_C WD40_MABP1-WDR62_1st Beta-prop_SPT8 Beta-prop_HPS5 Beta-prop_SCAP Beta-prop_IFT140_1st WD40_RFWD3 Beta-prop_WDR19_1st Beta-prop_WDR75_2nd Beta-prop_WDR35_TULP_N Beta-prop_BBS7 RMC1_N Nucleoporin_N Beta-prop_IP5PC_F WD_LRWD1 VPS8_N Beta-prop_LRRK2 PROPPIN DUF7165 Beta-prop_IFT122_2nd zf_topless LisH LisH_2
Other DBs
NCBI-GeneID: 118412242
NCBI-ProteinID: XP_035670860
UniProt: A0A9J7KVL0
LinkDB
Position
3:complement(12598155..12606459)
AA seq 513 aa
MALEIESADIIRLIMQYLKENSLHRTLSVLQEETSVSLNTVDSIDSFVSDINNGHWDTVL
QAIQSLKLPDKTLIDLYEQVVLELIELRELGAARSLLRQTDPMIMMKQQQAERYVHLENL
LARSYFDPREAYPDGQTKERRRAAIAQALAGEVSVVPPSRLLALIGQALKWQQHQGLLPP
GTTIDVFRGKAAQKEEEEEKYPTQVTKNIKFGQKSHVECARFSPDGQYLITGSVDGFIEV
WNFTTGKIRKDLKYQAQDNFMMMDDAVLCLCFSRDSEMLASGGQDGKIKVWKIQTGQCLR
RYERAHSKGVTCVSFSKDSSQLLSASFDQTIRIHGLKSGKTLKEFRGHTSFVNEAVFTPD
GHNLISASSDGTVKLWNIKTTECIGTFKSLGGTAGADITVNSVHTLPKNQEHFVVCNRSN
TVSIMNMQGQIVRSFTSGKREGGDFVCCTVSPRGEWIYTVGEDMVLYCFSTTTGKLEFTL
TVHEKDVIGICHHPHQNLIGTYSEDGLLKLWKP
NT seq 1542 nt   +upstreamnt  +downstreamnt
atggcgctggaaatcgagtctgccgatataatccgtctgatcatgcagtatctaaaggag
aacagtttacaccgtacgctgtccgtactacaagaggagacctcggtgtcgctcaacacc
gtggactccattgacagcttcgtgtcagacatcaacaacggacactgggacaccgtcctg
caggccatccagtctctcaaactacccgataaaactctcatagatctgtatgaacaggtc
gtgctggagctgatagaactgcgagagttgggcgcggcccgttcgctgctccgccagacg
gacccgatgatcatgatgaagcagcagcaggccgagcgatacgtccacctggagaaccta
ctcgctcgctcgtacttcgatcccagagaggcttatcctgacggtcagaccaaggagcgg
cggagagcggcgatcgctcaggcgctagcgggcgaggtgagcgtggtcccgccgtcccgt
ctcctggctctgattggccaggccctgaaatggcagcagcaccagggactcctcccccca
ggtaccaccatcgatgtgttccgaggtaaggcagctcagaaggaagaggaagaggagaaa
tatcccacacaagtcaccaagaacatcaagtttggccagaagtcccatgtagagtgtgcc
aggttctccccagacggacagtacctcatcacaggcagtgtggacgggttcatcgaggtc
tggaacttcacaactggcaagatcaggaaagatctcaagtaccaggctcaggataacttc
atgatgatggatgatgctgtgctgtgcctgtgtttcagccgtgacagtgagatgttggct
tcgggaggtcaggatggaaaaatcaaggtgtggaagatccagactggccagtgtctgcgc
aggtacgagcgcgcccacagcaaaggtgtgacctgtgtcagcttctccaaggacagcagt
cagctactcagcgcttcattcgaccagactatcagaatccacgggttgaagtctgggaag
actctaaaggagttcagaggtcacacgtcatttgtaaatgaggccgtgttcacccccgac
ggacataacctgatcagcgcatcgtcagacggcacagttaagctgtggaacatcaagaca
acagagtgcattggcaccttcaagtcactagggggcactgcaggcgcagacatcacagtg
aacagtgtccacaccttacctaagaaccaggagcacttcgtcgtgtgtaaccgctccaac
acagtctccatcatgaacatgcagggacagattgtgcgtagcttcacgtccggtaagagg
gaaggcggagactttgtgtgctgtacggtgtcgccgcggggagagtggatctacacggtc
ggcgaggacatggtgctgtactgcttcagcacaaccacggggaaactggagttcacgctc
acggtccatgagaaggatgtgattggcatctgtcaccacccccaccagaacctgattggc
acatacagcgaggacggactgctcaaactgtggaaaccttaa

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