Branchiostoma floridae (Florida lancelet): 118413374
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Entry
118413374 CDS
T01074
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB2
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
bfo
Branchiostoma floridae (Florida lancelet)
Pathway
bfo03020
RNA polymerase
bfo03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bfo00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
118413374
09124 Replication and repair
03420 Nucleotide excision repair
118413374
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bfo03021
]
118413374
03400 DNA repair and recombination proteins [BR:
bfo03400
]
118413374
Enzymes [BR:
bfo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
118413374
Transcription machinery [BR:
bfo03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
118413374
DNA repair and recombination proteins [BR:
bfo03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
118413374
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_4
RNA_pol_Rpb2_3
RNA_pol_Rpb2_5
DUF5817
Motif
Other DBs
NCBI-GeneID:
118413374
NCBI-ProteinID:
XP_035672620
UniProt:
A0A9J7MMH3
LinkDB
All DBs
Position
4:complement(16434995..16445610)
Genome browser
AA seq
1176 aa
AA seq
DB search
MFEIDEEYTYQEEDETDEITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRI
VEDSPQIDLQAEAQHLTMEAEVPPRYLLNFEQIYLSKPTHWEKDGAPSPMMPNEARLRNL
TYSAPLYVDITKTIVKDGEERIETQHQKTFIGKIPIMLRSTYCLLSGLTDRDLTELNECP
LDPGGYFIINGSEKVLIAQEKMATNSVYVFAKKDSKYAFTGEIRSCLEHSSRPTSTLWVH
MLARGGTGQRKSAIGQRIVAVLPYIRQEIPIIIVFRALGFVSDRDILEHIIYDFDDPEMM
EMLKPSLDEAFVIQEQNVALNFIGARGAKPGVTKDKRIKYAREILQKEMLPHVGISDYCE
TKKAYFLGYIVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAYLFRGLFKNLTKEVRIY
AQKFIDRGKDFNLELAIKTRIITDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTFAST
LSHLRRLNSPIGRDGKLAKPRQLHNSLWGMICPAETPEGQAVGLVKNLALMAYISVGSQP
SPILEFLEEWSMENLEEVAPSAIANATKIFVNGCWVGVHRDPEQLMNTLKKLRRQMDIIV
SEVSMVRDIREREIRIFTDAGRICRPLLIVEKQKLLLKKHHVDMLKEREYNNYSWQDLVA
GGVVEYIDTLEEETVMLAMTPDDLQDKGVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQ
SPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINA
IVAIASYTGYNQEDSVIMNASAIDRGLFRSVFYRSYKESESKKGLDQEEIFEKPTRDEVT
GMRNAIYDKLDDDGIIAPGVRVSGEDVIIGKTVTLPENEDELESTTKRFTKRDSSTFLRS
SETGIVDQVMVSINQEGYKFCKVRVRSVRIPQIGDKFASRHGQKGTCGITYRQEDMPFTA
EGISPDIIINPHAVPSRMTIGHLIECLQGKVSANKGEIGDATPFNDAVNVQKISNLLHEY
GYHLRGNEVVYNGFTGRKLSTQLFIGPTYYQRLKHMVDDKIHSRARGPVQNLNRQPMEGR
SRDGGLRFGEMERDCQIAHGAAQFLRERLFEVSDPYQVHVCNLCGLIAIANLRNQTFECR
GCKNKTQISKIRIPYACKLLFQELMAMSIAPRMMTQ
NT seq
3531 nt
NT seq
+upstream
nt +downstream
nt
atgtttgaaatcgacgaagagtacacctaccaggaggaggatgagactgatgagatcacg
cccgacctgtggcaggaggcgtgctggatcgtcatcagctcgtactttgacgagaagggt
ctggtacgccagcagctggactccttcgatgagttcatccagatgtccgtgcagcggatc
gtggaggattcgccacagatcgacctgcaggccgaggcacaacatctcaccatggaggcg
gaagttcctcctcgctacctgctgaacttcgaacagatctacctgtccaaacccactcac
tgggagaaggacggagctcccagtcccatgatgcccaacgaagctcgacttcgaaacttg
acgtattcagcacccctgtatgttgacatcacaaaaactatcgtcaaagatggcgaagag
cgaattgagactcaacatcagaaaactttcattgggaagattcccatcatgttgcgctcc
acctactgtctccttagcggactgacagacagagacttgacagagttgaacgaatgtccc
ttagatcctggaggctacttcatcatcaatggctcagagaaagttctgattgctcaagag
aagatggcaacaaactcagtatatgtgtttgcaaagaaggactccaagtacgcctttacg
ggcgagatcagatcgtgtttggagcactcgtcacgaccgacaagcacgctgtgggtccac
atgctggccagaggaggcacaggtcagagaaagagtgccattggtcagcgcatcgtggcg
gttctgccgtacatccgtcaggagattcccatcatcatcgttttccgtgccttgggcttc
gtgtcagacagggacattctggaacacatcatctacgactttgacgacccagaaatgatg
gaaatgttgaaaccctccctggatgaagcctttgtcatccaagagcagaacgtggccctg
aacttcatcggtgcgagaggtgccaaacctggtgtgactaaggacaagagaatcaagtat
gcgagagaaatcctacagaaggagatgctgcctcatgtaggcatcagtgactattgtgag
accaagaaggcttatttcttagggtacattgtacacagactgctgttggcggcactgggt
cggagagagctggacgaccgtgatcactacggtaacaagcgtctggacctggcaggtccg
ctgctggcttacctgttccgcggcctgtttaagaacctgaccaaggaggtcagaatatac
gcccagaagttcatcgacagggggaaggacttcaatctggagcttgctatcaagacacga
atcatcacagatgggttgaagtattccctggccacaggaaactggggtgatcagaagaag
gctcaccaggcgagggctggggtgtctcaggtgttgaacagactgacgtttgcctccacc
ctgtcccatctgcggcgtctgaactcccccattggtcgtgacggcaagctggccaaaccc
agacagctgcacaactcactctggggcatgatctgtcctgcagagacccctgagggtcag
gctgtagggctggtgaagaacctggccctgatggcctacatctccgtgggttcccagccc
tcccccatcctggagttcctggaggagtggagtatggagaacctggaggaagtcgctccc
tccgccatcgctaacgccaccaagatctttgtgaacggctgctgggtgggggtgcatcgg
gaccccgaacagctcatgaacacactgaagaaactcaggagacagatggacatcatcgtg
tctgaggtttccatggtgagagacatccgggagcgcgagatcaggatcttcacggacgca
gggcggatctgtcggccgctgctgatcgtagagaaacagaagctcctcctgaagaagcat
catgtggacatgctgaaggagagggagtacaacaactacagttggcaggacctggttgcc
gggggtgtggtggagtacatcgacaccctggaggaggagacggtgatgctggccatgacc
ccagatgacctgcaggacaagggcgtggcctactgttccacctacacccactgtgagatc
cacccgtccatgatcctgggagtgtgtgcctccatcatccccttccctgatcacaaccag
tctccccgtaatacgtaccagtctgctatgggtaagcaggccatgggagtctacatcacc
aacttccatgtgcgtatggacacgctggcccacgtgctctactacccacagaaaccactc
gtcaccacgcgctccatggagtacctacgcttccgagaacttcccgccggaatcaacgcc
attgtcgccatcgcgtcttacacggggtacaaccaggaggactctgtgatcatgaacgcg
tcagccatcgaccggggactgttccgcagcgtgttctaccgatcctacaaggagtctgaa
tccaagaaaggtctggaccaggaggagatctttgagaagccgacaagggatgaggttaca
ggcatgaggaatgccatctatgacaagctggatgacgacggtatcatcgcacccggggtg
agggtgtcaggagaggatgtcatcatcggcaagactgtcaccctgccagagaatgaagat
gagcttgagagcacaaccaagcggttcaccaagcgagactccagcaccttcctacgcagc
agcgagacaggcattgtggatcaggtcatggtgtccattaaccaggagggttacaagttc
tgtaaggtcagagttcgctccgtccgcatcccacagattggggacaagtttgccagtcgg
cacggtcagaagggaacatgtggaatcacatacaggcaggaggacatgccattcacagca
gaaggcatcagccctgacatcatcatcaacccccacgctgtaccgtctcgtatgaccatc
ggccatttgatcgagtgtctgcaggggaaggtgtcggccaacaagggcgagatcggcgac
gccacgcccttcaacgatgccgtcaacgtgcagaagatctctaacctgctccacgagtat
ggctatcacctgagaggaaatgaggtggtgtacaatgggttcacaggcaggaagctcagc
actcagcttttcatcggccccacctactaccagcgcctgaagcatatggtggacgacaag
atccactctcgtgcccggggtcctgtgcagaacctgaacagacagcccatggagggcagg
tcaagggatggaggtctccgttttggagagatggagcgtgactgtcagatcgcccatggt
gcagcccagttcctgcgggagcggctgttcgaggtgtcggacccgtatcaggtgcacgtg
tgcaacctgtgtggcctgatcgccattgctaacctgaggaaccaaaccttcgagtgcagg
ggctgcaagaacaaaactcagatctcaaaaatccggatcccctacgcctgcaagctgctg
ttccaggagctgatggccatgagcattgcaccacggatgatgacccagtga
DBGET
integrated database retrieval system
