Branchiostoma floridae (Florida lancelet): 118413513
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Entry
118413513 CDS
T01074
Name
(RefSeq) symplekin-like isoform X1
KO
K06100
symplekin
Organism
bfo
Branchiostoma floridae (Florida lancelet)
Pathway
bfo03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
bfo00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
118413513
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bfo03021
]
118413513
03019 Messenger RNA biogenesis [BR:
bfo03019
]
118413513
Transcription machinery [BR:
bfo03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
118413513
Messenger RNA biogenesis [BR:
bfo03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
118413513
U7-dependent histone pre-mRNA processing factors
118413513
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
INTS1_R4
Cnd1
Motif
Other DBs
NCBI-GeneID:
118413513
NCBI-ProteinID:
XP_035672879
UniProt:
A0A9J7KYJ5
LinkDB
All DBs
Position
1:7818295..7840762
Genome browser
AA seq
1384 aa
AA seq
DB search
MAADSRLSIASQFFLEDEAGPAEAVSTSDKVVDLLNQASLMPKDVQKINTLKQVQELIVQ
KDPALLDNFLDEMLAFQQDKSADVRKFVVGFIEEACKQDPELLTKVVANLNMLLEDENVN
VVKKVILSTTQIYRVGLSWLSKVRTISEEMESTWDMIVTMKNRILVMLDSENDGVRTHVV
KFLEMMIVVLSARTPDSDIPKKTENDISLDQVPKGHPVIRYNELRDEGTKILDMMLGFTA
SAHISSMNLMASMGSLTAIAKQRPLYMARVVQAFESLHVNLPPTLAKSQVSSVRKNLKLQ
LSTLLKHPSSAEFHSQITTLLLDLGATQQELQKIIPKPSRAEKRERSEGGETSQPSKKPK
VQDDKDEEEDKVEEKPPPKLAPVTTQTANDITAKYLIPLLGNDNVANIVLLSMVTLPDTM
PAGFQSTYTPIQSAGTEEQVGHLARLMAAQMTAAGIGPGVEEMQKQAAASDKAKKEDEEE
GQEHRGKQSIQTVVGGTTALEKKKPAPLQPQLQQQKSRRIKGFRLADTLKPLDDDENQAM
VKAALKRILDAERTAIAGGVSQERMKILSSLVVNFGDNLMDIVQDFILEDVRGRVELGFS
CLYKMHAETVGKAKDPASLQRYELCLVRMLSGICNRPDQRDGLFHQVVAGAPYITDGAVD
IIRNFCLDENHVYIGMSTLRDLIISRPSQQLLFLQVLLDLTQSEKLEVRSNSIRFVKLLH
PKPKLQETIESFALTCLKCLVNKAPPPRLVIGKPAAEAEWTEDLIKLCLHLYLALLPLNH
KLIHELASVYVAASANIKRVVLRVLESPVKGMGMSSPELLLLVENCPRGAETLVTRMLHV
LTDKAPPSPELVRRVRDLYHKRVPDVRFLIPVLNGLEKKEVVAALPKLIKLNPIVVKEVF
NRLLGTQHAGDGNAGQSPLTPGELLVALHNIDTAKCDMKSIIKATGLCFAEKQVYTSEVL
AVVMQQLMEQNPLPTLLMRTVIQSLSMYPRLLGFVMNILQRLIIKQVWKQPKVWEGFIKC
CQRTKPQSFQVLLQLPPPQLKNVFEKCPDMRAPLLEQINNFTPHQRAHIPRAIMMVVEAE
PSAEEVKVAQAKAQAQADKAAQEKVNQEKAAAEQKQKEAAQKAAAEKQAAQKPQEIPKPP
PKPAATPAAVQKPPEVKSTPPPAAKSTPPAFQGMAISTVIGGVRTPPTSMSGRPGTPSGT
PVRTGTPTGTPVRPPASTPSSAPRQSGMSRPAAAGGRSQAVSKPPGAPLVKPAAAAAPQQ
KPKPAAPAAPAAQQKPAGVAKPVSSPATAAAKPAVQPAAKPATMASTADAAKPEVKQPVQ
VKQEPAQVKQEPVQTPASPKPTDAEQMEVDQPVKEEKMETDQDEQKAEEASGSRRRSARI
KAQH
NT seq
4155 nt
NT seq
+upstream
nt +downstream
nt
atggccgcggacagtcgtctatccattgcctctcaattctttctggaggacgaagcaggt
cctgctgaggctgtatcgacctcagacaaggtggttgacctgctgaaccaggcctccctc
atgcccaaggatgtgcagaagatcaacaccctgaagcaggtgcaggagctcatcgtgcag
aaggaccctgcactgctggataacttcctagatgaaatgctggcttttcagcaggacaag
tcagctgatgtccgcaagtttgtcgtagggttcatagaggaagcctgcaaacaggaccca
gaactgctgaccaaagtggtggccaatctgaacatgctgctggaagacgagaacgtcaat
gttgtgaagaaggtcatcctgtccacaactcagatatacagagttgggctttcatggctg
agtaaagtaagaaccatctccgaggagatggagtccacctgggacatgatcgtcaccatg
aagaaccgtatcctggtcatgttggactcggagaatgacggtgtccgtacccacgttgtg
aagtttctagagatgatgattgttgtcctgagtgccagaacacctgactctgacattccc
aagaagacagaaaatgacatctcacttgaccaggttcccaagggccatccagtcatcagg
tacaacgagctgcgagacgagggtacaaagatcctggacatgatgctgggcttcactgcc
tctgctcacatctccagtatgaacttgatggccagcatggggtccctgactgccattgca
aagcagcgccccctgtacatggccagagtagtgcaggctttcgagtccctccatgtgaac
ctgcctccaacccttgccaaatctcaagtcagcagcgtcaggaaaaatctaaagctgcaa
ctgtcgaccctcctgaagcacccatcgtctgcagagttccactcccagatcaccacccta
ctgctggacctgggggccacacagcaggagctccagaaaatcatccccaagccttccaga
gctgaaaaaagagaacggtctgagggtggagaaacttcacagccatctaaaaagcccaaa
gttcaggatgacaaggatgaggaagaagataaagtagaagagaagccacctcctaagctg
gctcctgtcaccacacaaacagccaatgatatcactgccaagtacctcatccctctactg
ggaaacgacaatgttgctaacatagtgctgctgtctatggtgactctgccggacaccatg
ccggctgggttccagtccacctacacacccatccagtctgcaggtaccgaggagcaggtg
ggccacctggccagacttatggctgctcagatgacagctgcagggattgggcctggtgtg
gaggagatgcagaaacaggcggctgctagcgacaaggcaaagaaagaagatgaagaggag
ggtcaagaacatcgagggaagcagagcatccagactgttgtgggagggaccactgctctg
gagaagaagaagcctgccccgctgcaacctcaactacagcaacaaaagagccgccgcatc
aagggtttccggttagccgacaccctgaagccattggacgatgatgaaaaccaggccatg
gtgaaagctgcactgaagcgcatattggatgcagagcgcacagctatcgcaggtggagtc
tcccaggagagaatgaagattctgtcctcactggtggtgaactttggggacaaccttatg
gacattgtccaagacttcatcctggaggatgttcgtgggcgagtggagctgggtttctcc
tgcctgtacaagatgcatgcggagacggtcggtaaggcgaaggacccggcctccctgcag
cgctacgagctgtgcctggtcaggatgctgtctgggatctgcaaccggccagatcagagg
gatgggttatttcaccaggtagtggcaggtgcaccctacatcactgatggagctgtagat
atcatccggaacttctgcctggatgagaaccatgtgtacatcggcatgtccaccctgcgt
gacctcatcatcagccggccctcccagcagctgctgttcctgcaggtcctgctcgacctc
acacagagtgagaaactagaggtccgctccaacagtattcgctttgtgaagctgcttcat
ccaaagccaaagctacaagagactattgagtcttttgccctgacctgtctgaagtgtctg
gtgaacaaggccccgcccccacgactggtgattggcaagccagctgcagaggctgagtgg
acggaggacctgatcaaactgtgtctccatctgtacctggctctgctgcctctcaaccat
aaactcatccatgaactggcttctgtgtatgtagcagcctcggccaacatcaaacgggtt
gtgttgagagttttggaaagcccggtgaaaggcatgggtatgtcatctccagagctgctg
ctgttggtggagaactgtcctcgtggagcagagactctggtcaccaggatgttacatgtg
ctcactgataaggctcccccctctcctgagttggtgagaagggtgcgtgacctgtaccat
aagagagtccctgatgtccgtttcctcattcctgtactcaacggactggaaaagaaagag
gttgtggctgccctacccaagctgatcaagctgaatcccattgtggtgaaagaagtcttt
aacaggctgctgggaacacaacatgccggagacggtaatgctggccagagtcccctgacc
ccaggggagttactggtggcactgcacaacatcgacacagccaaatgtgacatgaaatct
atcatcaaggcgactgggctgtgttttgctgagaagcaggtgtacacgtcggaggtcctg
gcggttgtgatgcagcagctgatggaacagaacccgctgcccaccctgctgatgaggaca
gtcatccagtccctcagcatgtacccccggctgctgggcttcgtcatgaacattctgcag
aggctcatcatcaagcaggtgtggaagcagcccaaggtttgggaaggtttcatcaagtgc
tgccagcgcacgaagccccagtccttccaggtgctactacagctgccccctccgcagctg
aagaacgtgttcgagaagtgtcccgacatgcgggctccgctcctggagcagatcaacaac
ttcacgccccaccagcgggcgcacatcccccgcgccatcatgatggtggtggaggccgag
ccgtccgcggaggaggtgaaggtggcccaggctaaagcacaggctcaggctgacaaggct
gcgcaggagaaggtcaaccaggagaaggcagctgcagaacagaaacagaaggaagcagcc
cagaaagctgcagcagaaaagcaggctgcccagaaaccccaggagatccccaagccacca
ccgaagccagccgcgacaccggcggcggttcaaaagccaccggaggtcaagtccacccct
cctcctgcagcaaagtccaccccgccggccttccagggcatggctatctctacagtcatt
gggggagtacggacgcccccgaccagtatgtctggcagacctggaaccccctcaggtacc
cccgtcaggacgggaacccccacagggacccccgtcagaccgcctgcatccacaccttcc
tcagctcccaggcaatctggcatgagcagaccagcagcggcaggcgggaggtcccaggcc
gtgtccaagcctcccggcgccccgctggtcaaaccggcagcagcagcagctcctcagcag
aaacccaaacccgcagcacctgcagcacctgcagcgcagcaaaaacctgcaggtgttgca
aagccagtctcttcacctgccacagctgcagcaaagccagctgtgcagccagctgctaaa
cctgccacaatggcttccacagctgatgcagcaaagcctgaagtcaaacagcctgtccag
gtgaaacaggaaccagctcaggtcaagcaggagcctgttcaaactccagcttctcccaag
cccactgatgcagagcagatggaggtagaccagccagtgaaggaggagaagatggagact
gatcaggatgaacagaaagcagaggaagcctcaggatcaaggaggagaagtgccagaatt
aaggcacagcattga
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integrated database retrieval system
