Branchiostoma floridae (Florida lancelet): 118413658
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Entry
118413658 CDS
T01074
Name
(RefSeq) DNA repair protein RAD50-like
KO
K10866
DNA repair protein RAD50 [EC:3.6.-.-]
Organism
bfo
Branchiostoma floridae (Florida lancelet)
Pathway
bfo03440
Homologous recombination
bfo03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
bfo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
118413658
03450 Non-homologous end-joining
118413658
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bfo03032
]
118413658
03400 DNA repair and recombination proteins [BR:
bfo03400
]
118413658
DNA replication proteins [BR:
bfo03032
]
Eukaryotic type
DNA Replication Termination Factors
MRN complex
118413658
DNA repair and recombination proteins [BR:
bfo03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
MRN(MRX) complex
118413658
BRCA1-C complex
118413658
NHEJ (non-homologous end-joining)
MRX complex
118413658
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
Rad50_zn_hook
SbcC_Walker_B
AAA_21
SMC_N
ABC_tran
GAS
GTP_EFTU
Spectrin
AAA_29
AAA_13
Ubiq_cyt_C_chap
Motif
Other DBs
NCBI-GeneID:
118413658
NCBI-ProteinID:
XP_035673078
UniProt:
A0A9J7KYY5
LinkDB
All DBs
Position
4:complement(23464391..23489218)
Genome browser
AA seq
1049 aa
AA seq
DB search
MSSLVKMSIQGIRSFGPDDKDKQVIKFFNPLTIIQGHNGAGKTTIIECLKYMTTGDFPPG
CARGGSFVHDPKELQPVEKRIDKINAKANEIHQLEKKISSLQSRKTQMERDMQDLRDNLE
NIFSGSTEQLKRQLSEHLGQVEENEDAVRQLEMRMDQVTRECQRYGREKGDLLVKQGKLQ
QEATLHGQNIQDRDQLERREIEMELSKVDASTERIASLGADLARKERELQQVEESAHIPQ
LKEEVLQLQNEKRQLDGQLGQLDAELHQMHLQSSVRTQLEMLRKDKVAKEDSIRKLKQRH
QSELTDLMGHFPSKTELVEWLSQKQQEITQSQRRTQKVHQEVSSLEARKKMLTEQLKKRE
QELDKYEEQLFDVCGSQDFDVEMDELGDHIQKLQDQKGALVGTRHLYTRFISELQKEPSC
PLCERRFGDDQEVKELVDFIKQKIARVPTELNTKDQLLRQQQQKYDTMMSLKPIRKQVVD
LKDHEVPDIKSKISTINQEIEQKRTQITEGDELFATLSMEEEMAKACKDDIAMIERYRTE
LRELERKIAQQSSKLAGSDSGRTIEEVNNAKQDKQLQVDNTAAKLEQKRQQISDLSERIN
ALKMEVNTIAGEKLRLESELQRMKQLEDQKAELVSLYQELQREIKDTQEKLEPLESRLQG
LRREKDDITRKKEQAVERAKGKVDQEKSRKNEVASLDAEIDRYIEQGRDKLLQQTEEKLQ
VLENKVKKAEDEKEKMDSRMQTLRKEVANQKARERELQDNLQLRKREEEVNKLAGEICDL
EEELGGLDARSIEQEKRKLVEKYEQLMKDKHVAEGRMRGLEEEIRRYRKELQSEQFKDAD
VKYRDMMIVLKTTELANADLEKYYKALDRAVMSYHHMKMEEINKIIQELWRNTYRGQDID
TIEIRSAEDTTTAATKNMRRTYNYRVVMVKGETALDMRGRCSAGQKVLASLIIRLALAET
FCINCGVLALDEPTTNLDRENIESLAAALMDIVKGRSRQRNFQLLVITHDEEFVDLLVHA
NFTQHFWRVSKDHDGLSQLVKHDAAALQD
NT seq
3150 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtccctggtgaagatgagtatccagggcatccggagcttcggcccagatgacaag
gataaacaggtgatcaaattcttcaaccccctgaccatcatccaaggccacaatggtgca
gggaagaccaccataattgaatgtctgaagtacatgacgacaggagacttccctccaggc
tgtgccaggggcgggtcatttgtgcatgacccaaaggaactgcagccagtggagaagcgt
atcgacaagatcaatgccaaggccaatgagatccaccagcttgagaagaagatcagcagt
ttacagagcaggaagacacagatggagagagacatgcaggaccttagagacaacctggag
aacatcttctcaggttctactgagcagctgaagagacagctgagtgagcacctgggacag
gtggaggagaacgaggatgctgtacggcagctggagatgaggatggaccaggtcaccagg
gagtgtcaaaggtatggccgtgagaagggagacctcctagtgaagcagggaaaactgcag
caggaggccacgctgcatggacagaacatccaggacagggaccagctggagaggagggag
atagagatggaactcagtaaggtggacgcctccacggagcggattgcgagcctgggagcc
gacctggccaggaaggagcgggagctgcagcaggtggaggagtcggcacacattccacag
ctgaaggaggaggtgctgcagctgcagaatgagaagagacagctggatggtcagctgggc
cagctggatgcggagctgcatcagatgcacctgcagtcgtctgtccgcacacagctggag
atgctgcgcaaggacaaggtggccaaggaggacagcatcaggaaactgaagcagaggcac
cagtcggaactcaccgatctcatgggtcatttccccagtaagacagagttggtggagtgg
ttgagtcagaaacagcaggagatcacacagagccagcgccgcacacagaaggtgcaccag
gaggtgtcatctctcgaggccaggaagaagatgctcacagaacaactcaagaagagggaa
caggagcttgacaagtatgaggaacagctgtttgatgtgtgtggtagtcaggactttgat
gtggagatggatgaactgggagaccacatacagaaactacaggaccagaagggggcgctg
gtgggcacacgccacctgtacacccggttcatcagtgagctacagaaggaacccagctgt
ccgctgtgtgaacgccgctttggtgacgaccaggaggtcaaagaactggtcgacttcatt
aagcaaaagatcgccagagtgccaacagagctgaacacgaaggaccagcttctccggcag
cagcagcagaagtacgacaccatgatgtcactcaagccaatcaggaaacaggtcgtcgac
ctcaaggaccacgaggttcccgatatcaagagcaagatctccactatcaaccaggagata
gaacaaaagcgaacccagatcacagaaggagatgaactgtttgccacattgtccatggag
gaggagatggccaaggcctgtaaggatgacatcgccatgatcgagcgctatcgcactgaa
ctccgggaactcgagaggaagattgcccagcagtcgtctaagcttgcagggtcagatagt
gggcgcaccattgaggaagtgaacaatgctaaacaggacaagcagctccaagtggacaac
acggccgccaagctggagcagaaacggcagcagatcagcgacctgtcggagaggatcaac
gcgctgaagatggaggtgaacacgatcgcgggggagaaactgcggctggagagcgagctg
cagcggatgaaacagctggaggatcagaaggcggagctggtgtctctgtaccaggaacta
cagagggagatcaaggatactcaggagaagctagagcctctggagtccagactgcagggt
ctccggcgcgagaaagacgacatcactcggaagaaggaacaggccgtggaacgtgcgaaa
ggcaaggtggatcaggagaagagtcggaagaacgaggtggccagtctggatgctgagatt
gataggtacattgaacaagggagggacaagctgctacaacaaacagaggaaaaactgcaa
gttctggagaacaaagtgaagaaggcagaagatgagaaagagaaaatggactctaggatg
caaaccttaagaaaggaggtagccaatcagaaggccagagaaagagagctacaggacaac
ctacaactgcggaagagagaagaggaagtgaacaagctagcaggagagatctgtgacctg
gaggaggagctgggaggtctggatgcccgcagtattgagcaggagaagaggaagctggtg
gagaaatacgagcagctgatgaaggacaaacatgtggccgaggggaggatgagggggctg
gaggaggagatacgcaggtaccgaaaagagctccaatctgaacagttcaaagatgcagat
gtgaagtacagggacatgatgattgtactgaagacaacagaactggctaatgctgacctg
gaaaagtactacaaggctctggacagggctgtgatgagctaccatcacatgaagatggaa
gaaatcaacaagatcatccaggagctgtggcggaacacgtaccgcgggcaggacattgac
accatcgagatacggtctgcggaggacaccaccacagccgcgaccaagaacatgcggcgc
acctacaactacagggtggtgatggtgaagggggagacagcattggacatgagagggagg
tgcagtgcagggcaaaaggtgctggcatccctgatcatccgcctggctctagccgagacc
ttctgtatcaactgtggagtcctggccttggatgaacccaccactaacctggacagggaa
aacatcgagagtctggccgccgccctgatggatatcgtcaagggtcgctccaggcagaga
aacttccagctcctggttatcacccatgacgaagagtttgttgaccttcttgtccatgcc
aacttcacccagcacttctggagggtgtccaaggatcacgatggactgtcgcagttggtg
aagcatgatgcagcagccttacaggactag
DBGET
integrated database retrieval system
