Branchiostoma floridae (Florida lancelet): 118414893
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Entry
118414893 CDS
T01074
Name
(RefSeq) structural maintenance of chromosomes protein 3-like isoform X1
KO
K06669
structural maintenance of chromosome 3 (chondroitin sulfate proteoglycan 6)
Organism
bfo
Branchiostoma floridae (Florida lancelet)
Brite
KEGG Orthology (KO) [BR:
bfo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
bfo03036
]
118414893
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
bfo00535
]
118414893
Chromosome and associated proteins [BR:
bfo03036
]
Eukaryotic type
Sister chromatid cohesion proteins
Cohesin complex
118414893
Meiosis-specific proteins
Cohesin complex and associated proteins
118414893
Proteoglycans [BR:
bfo00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
118414893
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SMC_N
SMC_hinge
AAA_23
AAA_15
AAA_21
MtrG
AAA_29
HEF_HK
Motif
Other DBs
NCBI-GeneID:
118414893
NCBI-ProteinID:
XP_035675069
UniProt:
A0A9J7L2S4
LinkDB
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Position
4:16204077..16222397
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AA seq
1211 aa
AA seq
DB search
MYIKQVIIQGFRSYRDQTTIDPFSPKHNVVVGRNGSGKSNFFYAIQFVLSDEFSHLRPEQ
RQALLHEGTGPRVISAFVEIVFDNSDNRLPIDKDEVTLRRVIGSKKDQYFLDKKMVTKTD
VMNLLESAGFSRSNPYYIVKQGKINQMATAPDSQRLKLLREVAGTRVYDERKSESQNILK
ETEGKQEKIEELLKYIEERLATLEQEKEELNQYLKYDKMRRSLEYTIHDHELRNTRNQLE
DLSNKRDKSGQRSRELRDNAQEAGDKCKELSKDIRELKANMQALVEEKDQLMSERQDVFK
RRAKLELRVQDMEQELQGDRDSKTHAEMELKRLQEEIAERQEELEKITEPYNQLRTREDE
VTNRLATCEQKRAALYAKQGRGNQFRNEDERDRWIKKEVNSLKKTINDKKEQIRKLTEDI
DSNSRRQEELGNQTKQRTEEMENLRGQMDELNRKYYEQKTQKDHLQNERNSLWRTENSMQ
QSIAGTQEELSKTQQQLRSLTGKAILNGMDSVHKILDMWRRDAHKKKVADGYHGTMIENF
ECDKNFFTCVEVTAGNRLFYHIVDNADIATEILKEMNKRKMPGECNFMPLNRLDVRGTNY
PETPDALPMINQLRFDQKLNKAFQHVFGKTLICRSMEVATQFARTQNLDCITLEGDQVSR
RGALTGGYYDTRKSRLDLQQTKVSLTQQLEAQETEYDIMKQKLDDIESRVTNVLSEMQKL
ETRNSKNKTIYEQIRSDVAYLNGEYKRLRPDLKIREMERSLASQQSELEAMRSTMESLQA
EMGTSLMSQLTVEDQGEVDSLNDTIAALRQENKDVLKRRYDLEQRKNRLENKITDNLMRR
REQLQMELQDISVESKKSRLDTAREELSTLARGMESTVARLEDIEGEVDHMNRDLSELQS
NLEEWKRRENEHSEKINDDAKELEKMTNKQSLLLKKKEECMRKIRELGSLPSDAFEKYQS
LSLKALFKKLEQCNQELKKYSHVNKKALDQYVNFSEQKEKLLKRRDELDRGHKSIIELMD
VLEHRKYEAIQLTFKQVSKYFSEVFEKLVPGGKGKLIMKTEAPENPEDQEGASQASSQTS
LPPVEQFTGVGIKVSFNERNEGMKEMQQLSGGQKSLVALTLIFAIQKCDPAPFYLFDEID
AALDSTHRTAVAQMIQELSSDAQFITTTFRPELLETADKFYGVKYRNKVSHIETCVKLDA
MEFVEDDTTRQ
NT seq
3636 nt
NT seq
+upstream
nt +downstream
nt
atgtatatcaaacaggtgatcatccaaggtttccgtagttaccgggaccaaaccaccatt
gaccccttcagtcccaagcacaatgttgtggttgggagaaatggatcagggaagagcaac
ttcttttatgcaatccaatttgtcctgagtgatgaatttagccacctacgtcctgagcag
aggcaagctttgctacatgagggcacagggcccagagtcatctctgcttttgtagagatt
gtctttgacaattctgacaacaggctgccgattgacaaggatgaggtgacacttcgccgt
gttatcggctccaagaaggaccaatatttcttggacaagaagatggtcacgaagacagat
gtgatgaacctcctggagagtgctgggttctcccgcagtaacccgtactacatcgtcaag
cagggaaagattaaccagatggcgacagccccagactctcagcgtctgaagctcctgaga
gaggtggctggcacaagggtgtacgacgagcgcaagtcagagagtcaaaacatcctcaag
gaaactgagggaaagcaggagaagattgaagaactgctgaagtacattgaggagcgtctg
gcaaccctagagcaggagaaggaagagctgaaccagtacctgaagtatgacaagatgaga
cgatccctagagtacacgattcatgaccacgagctgaggaatacacgcaaccagcttgag
gatctttccaataagcgagacaagagtgggcagcgctcacgggagcttcgtgataacgca
caggaagctggagataaatgcaaggaactgagtaaagatatccgtgaactgaaggccaac
atgcaggcattggttgaggagaaggaccagctgatgtctgagagacaggatgtgttcaaa
cgcagggctaagctggagctgcgtgtacaggacatggagcaggaactgcagggggacagg
gacagtaagactcatgcagagatggaactgaagaggctgcaggaggagatcgctgagcga
caggaggagctggagaagatcactgaaccctacaaccagctccgcaccagggaggatgaa
gtcaccaacaggcttgccacctgtgaacagaagagggcagcgctgtatgccaagcaaggt
cgtgggaaccagttccgcaatgaggacgaacgggatagatggatcaagaaagaagtgaat
tcactgaagaagactatcaatgacaagaaggaacagattcgcaagttgacggaggacata
gatagcaacagcagacgtcaggaggagttaggaaaccaaacaaagcaacgaacagaggag
atggagaacctgcggggccagatggacgagctcaacaggaagtactacgagcagaagaca
cagaaggaccatctgcagaatgagcgcaactccctgtggcgtacagagaacagcatgcag
cagtccatcgcagggacacaggaggagctcagtaagacacaacagcagctacgctcactc
actggcaaggccattctgaatggaatggacagtgtgcataagatcctggacatgtggcga
cgagatgcacacaagaagaaggtggctgatggttaccacggcacaatgatcgagaacttt
gaatgtgacaaaaacttcttcacatgtgtggaggtgactgctgggaacagattattctac
cacatcgtggataatgcagacattgcaacagagatcttgaaggagatgaacaaacgtaag
atgccaggagaatgcaacttcatgccactcaaccgcctggatgtgaggggcaccaactac
ccagagacaccagatgctctgcccatgatcaaccagctgcgcttcgaccagaagctgaac
aaggccttccagcacgtcttcggcaagacgctgatctgccgcagcatggaagtggccacg
cagttcgcacgcacacagaacctggactgcatcacactggaaggtgaccaggtgagtcgc
cggggggccctgacgggtggatattacgacacacggaagtcacggctggaccttcagcag
actaaggtgtccctaacacaacagctggaggcacaagagacagagtatgatatcatgaaa
cagaaactggatgatattgaatccagggtgaccaatgtgctcagtgagatgcagaaactg
gagactagaaacagcaaaaacaaaaccatatatgagcagattcgcagtgatgtagcttac
ctaaacggggagtataaacggctccgacccgatctcaagatacgtgaaatggagcgtagt
ctggccagccagcagtcagagctggaggccatgaggtccaccatggagtccctgcaggca
gagatgggcacgtctctgatgtcccagctcaccgtggaggaccagggagaggtggacagt
ctgaacgacacgatcgcagccctgcgtcaggagaacaaggacgtgctgaagagacggtac
gacttggagcagcggaaaaacaggctggagaacaagatcactgacaacctgatgcgccgt
cgggagcagctacagatggaacttcaagacatttctgtggagagtaaaaagtcccggttg
gacacggcccgagaggagctgagcaccctggccagaggcatggagtcaacagtggccagg
ctagaagacatagaaggtgaggtggaccacatgaacagggacctgtctgaactgcagtct
aatctggaggaatggaagagaagggagaatgagcactcggagaaaatcaatgatgatgcc
aaggagctggagaagatgaccaacaagcagagcctgcttctaaagaagaaagaggagtgt
atgcgcaagatcagggagttgggctcactccccagtgatgcattcgagaagtatcagagc
ctgtccctgaaggctttgttcaagaagcttgagcagtgtaaccaggagttgaagaagtac
agccatgtgaataagaaggcgctggatcagtatgtcaacttctccgaacagaaggagaag
ctactgaagagaagggatgaactggacaggggacacaagtccatcatagaactgatggat
gtgctggaacataggaaatatgaggctatccagctcacattcaaacaggtttcaaagtat
ttcagtgaggtatttgagaagcttgtcccgggtggaaaggggaaactgatcatgaagaca
gaggcaccagagaaccctgaggatcaggagggagccagccaggcatcatctcagaccagc
ctgcctcctgtagagcagttcacaggggtgggcatcaaggtgtcgtttaacgagcgtaat
gagggcatgaaagagatgcagcagctgtccggtggccagaagtctctggtggccctcacc
ctcatctttgccatccagaagtgtgaccccgccccgttctacctgtttgatgagatcgat
gcagctctggactccacccacagaacagctgtagcacagatgatccaggagctgtcgtct
gacgcccagttcatcaccacaaccttccgtcctgagctgctggagacggcagacaaattc
tacggagtcaagtacaggaacaaggtcagccacatagaaacctgtgtcaagctggatgcc
atggaatttgtcgaagatgataccacacgccaatag
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integrated database retrieval system
