Branchiostoma floridae (Florida lancelet): 118415876
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Entry
118415876 CDS
T01074
Name
(RefSeq) RNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
bfo
Branchiostoma floridae (Florida lancelet)
Brite
KEGG Orthology (KO) [BR:
bfo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
bfo03016
]
118415876
Enzymes [BR:
bfo01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
118415876
Transfer RNA biogenesis [BR:
bfo03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
118415876
Prokaryotic type
tRNA splicing ligases
118415876
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Cu-oxidase_4
DUF6471
Motif
Other DBs
NCBI-GeneID:
118415876
NCBI-ProteinID:
XP_035676627
UniProt:
A0A9J7L5T2
LinkDB
All DBs
Position
5:complement(62670..80890)
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AA seq
507 aa
AA seq
DB search
MPENRSYNDELNFLDKIDANTWRIKKGFVPNMKVDGFFYVNDLLEKLMFDELRQHSRAAG
FGGFLPAMKQIANVAALPGIVQKSVGLPDVHAGYGFAIGNLAAFDMSNPEAVVSPGGVGF
DINCGVRLLRTNLDERDVQPVKDELAQAMFDHIPVGVGSKGVIPMGARDLEEALEMGVDW
SLREGYAWAEDKEHCEEYGRMLNADQSAVGSKAKKRGLPQLGTLGAGNHYAEIQVVDEIF
DDYASQRMGIDHKGQVVVMIHSGSRGFGHQVATDALVAMEKAMKRDKVLTNDRQLACARI
HSPEGQEYLKGMACAANFAWVNRSSMTFLSRQAFAKVFNTTPDDLDMQLIYDVSHNIAKM
EEHIVDGKQTTLLVHRKGSTRAFPPHHPLIPVDYQLSGQPVLIGGTMGTCSYVLTGTEKG
MEQTFGTTCHGAGRAWSRAKSRRNLDYQEVLDRLAELGISIRVASPKLVMEEAPESYKNV
TDVVNTCHAVGISKKAIKLRPIAVIKG
NT seq
1524 nt
NT seq
+upstream
nt +downstream
nt
atgcctgagaacaggagctacaatgatgagctgaatttcctggacaagatagatgcaaac
acctggaggatcaagaagggatttgttcccaacatgaaggtggatgggttcttctatgta
aatgacttgctggagaagctgatgtttgatgagctcaggcagcacagcagggcggctggt
tttggtgggttcttgccagccatgaagcagatagccaatgtggcagctctgccagggatt
gtgcagaaatctgtagggttaccagatgtccatgctgggtatgggtttgccattggtaac
cttgctgcctttgacatgagtaacccggaggccgtggtttcgccgggcggagtcggtttt
gacatcaactgtggcgtccggctgctccggacaaacctggacgagcgggacgtccagccg
gtcaaggacgagctggctcaggccatgtttgaccacatccctgttggcgtggggtcaaag
ggcgtcattcccatgggagcaagagacttagaggaggctttggagatgggtgtggactgg
tccctcagagaaggatatgcctgggcagaagacaaggaacactgtgaggaatatggccgc
atgcttaatgcagaccagagtgctgtgggctctaaggccaagaaacggggactaccacag
ctggggaccctgggtgcagggaaccactatgcagagatccaggttgtggatgagatcttc
gatgactacgcctcccagaggatgggcatcgaccacaagggacaggttgttgttatgatc
cacagtggaagtagaggattcgggcatcaggtggcaacagatgctctagttgccatggag
aaggcgatgaagagagacaaggtcctgaccaatgacagacagctggcgtgcgcacggatc
cactcccccgagggacaggagtacctgaagggcatggcgtgtgccgcgaacttcgcctgg
gtcaacaggtcatccatgaccttcctctccagacaggcgtttgccaaggttttcaacacg
accccagatgacctggacatgcagctcatctatgatgtctcacacaacattgccaagatg
gaggaacacattgtggatggcaaacagacaacacttctggtacacagaaagggatctacc
agggccttccctccccatcacccccttatacctgtagactatcagttgtcggggcaaccg
gtgttgattggcgggaccatgggaacgtgtagttatgtgttgacaggaacagagaagggc
atggaacagacgtttggaactacctgtcatggagcgggtcgggcgtggtctcgagccaag
tccaggcgtaacctagactaccaggaggttctggacagactagcagagctgggcatctcc
atccgggtggcatcgccaaaactggtcatggaggaggctccagagtcctacaaaaacgtc
acagatgtagtcaatacatgtcatgcagttggaattagcaagaaagcaatcaagctgaga
ccaatcgctgtcattaagggatga
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