Branchiostoma floridae (Florida lancelet): 118416151
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Entry
118416151 CDS
T01074
Name
(RefSeq) protocadherin Fat 4-like
KO
K16669
protocadherin Fat 4
Organism
bfo
Branchiostoma floridae (Florida lancelet)
Brite
KEGG Orthology (KO) [BR:
bfo00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
bfo04515
]
118416151
Cell adhesion molecules [BR:
bfo04515
]
Cadherins
Cadherin related
118416151
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_CELSR2_9th
Fibulin_C
Big_9
Motif
Other DBs
NCBI-GeneID:
118416151
NCBI-ProteinID:
XP_035677121
UniProt:
A0A9J7MRK8
LinkDB
All DBs
Position
5:complement(9806389..9821489)
Genome browser
AA seq
3015 aa
AA seq
DB search
MTSLQVDEDQPIGTTVLTLDVSDSDAGTDGDLTYTITDGNTGSYFELDPKTGVLVVSKGL
DFETAGGTYNISIQAVDGGNPARSADSYVLVTIGNVNDNPPSCTQTTYVVQVPEDETPNL
IPGFVDMDCSDSDGDILTDTIISGDPAGKFIIRPNGAFFTIFPGSALDYDDPNSTPRSYD
LIVQLSDGTTAIEVPVVIGVTPVNEGAPTITDDTVTVSENTPIGDVIYDVDDSDPDADDQ
AHGIVTYAITGPATHPFRIDSSTGEISVASTLDYETSTSYDLEVVATDGGGLASTATVTI
NFDGVNEFYPTCTSSAFGVSVSETAAVGALVVDLGCTDSDSGFDGFLTYTATQTPSTKFD
VSTGQIRVSTALDYDGGETLYSLVILVNDNSVITANQKTTTLTVTIEVTPENEDTPSFST
LVFPLTLSEDISIGSTIIDLDATDTDASNQAHGIVTYSITSGDPNGDFSIDPSSGVIVTN
SPLDWETTPLYPLEVWATDGGTPALSLSTSVIIILDDVNDNTAQCVPAVFSETVSESEAA
DYVVTSLSCTDSDGAFGVLTYSISAGDTNQFYMNGSDLLLTTPLDYDAVPRQYNLEITVA
DNGSPPNYVVIPVTVHVDPVNEFPPVFALSGDVVLSVDEDFTVNDPITSVAATDADSDVN
AHGQITYTILSGNIDAKFSLDSDTGILYLVDELDRETKASYNIVVQASDGVLFNAGTPNT
ITKWVNITVNDINDNEPQCTPSHYAVTFNESTATGTLITTVTCQDLFDAGTNAQIQYFFS
GSGNVGNAFAIDQTTGQITLQNPLEYDSSSDPQSYSLTVHAVDQGTTKLTGTALVTVAVS
PWNEDTPQFSETEYVVSVSEDTSLGTSVLQIIATDTDAGDDGVVHFSMAAHSTFLLEETT
GWLVLKSALDRESTSLYFLQVTATDQPANPADALSAEVNVTIIITDVNDNAPIFPTSAYQ
VTLNENDAVGTFVVRPTAFDFDSGINGILYYAITGGNTNTDFSIDQFGIITTARALDYET
TTSYSLTVTATDQGSTPLSATTQVGITITPYNEFDPAFGQASYSIAIDEDTAIGISIGQV
TATDADYGSNGLPDDVTYSFAATSTKFYIDEYTGDIRVKGALDKETQDTYTLTVVATDSG
TTPAVRSNSVTLTITIGDTNDNAPVFSPAAYTAEVPENATVGYNVVTVIASDSDLGVGGT
LDYNIVAGNAPDNIFAVDSSGNVFVTSIAYLDYETTTVYTLSVTATDQGTPKLTSTARVG
IQITANNEFDPVFSNGGYYTATISEDASLSDAVVRTTASDDDDGLDGDVTYFITSGNSGG
NFAIDYVTGWITVDKELDREVTSSYVLTVTAYDGGSSPSRSADATVYVTVDDVNDNVPSC
TGYYYDQTLAESVPAGTSLLQLTCSDPDEGVNGDLTYTISSGDLYGQFNVDSTGQLTVST
GLDYENTTQYQLTITVADNGSPSLSTEVAVTMEITGVNEFQPVFTLNPYSVSINENISLA
TSILAVSAQDDDAGTQGTPGEIKYYITSGNQDGAFSLDYLSGDLSTAAVLDREALDTYVL
TVVAVDGGTSPQRSGTSTVTITVEDANDNTPSCQSTYHTVTVPENTTLNTVLLTVNCSDN
DINQNTQLTYTIVNGSDGSITMSPSNADVYLAASLDYETTDGYYIQVEVSDNGYQSDTAT
VYVSVEVTGVNEAAPVFVNPSYQVSVAENETAGVVILQVNAADSDLGDDGRFTYSITGGN
NAGMFEISATNGQIGIKRRLDREDTDYYVLTVTATDMGSPALSSSVYVYVNVTDVNDNQP
SCSSYVVNIELDEDVNVGTTLASFNCTDQDISNNADLSYSIVSGDTTSRFAMVLNELQVL
NLDYEGDDWYYLTLAVVDNGSPALSANITVSVHVNPVNEFTPVFNDSSYSTNLYENITSG
TVVVTVGATDGDRSDQAQGMVRYSIVSGNTGNKFSIADDTGEISVVRPLDRETTDFYNLT
VRVHDNVYGGLPQLTADVQVEITVLDVDDNAPSFEPESYTVSVVEGAAVGTQLAVLTYTD
ADDGVNAISVLSVTSGNGTGLFSLAGNTLSLLGPLDYETEQQYVLTIQATDVLEPSFTDT
AEVIVNVISENDNQPVFAVDNTTINVSEDAALGTVLYDANATDSDLGEHSELTYSIVSSS
SPTFLIDSVTGAVRLGAALDRETLSSYVVNITAEDIDYYDFMLLYVFVTDVNDNKPAMTN
TVYSVTVDENQPIGTILLTVLATDPDEGNNSDITYTTRGSDASFFYVNSTTGDVSSQNTL
DFETRKSYYFFVRAYDNGSPQLYSSWSGVQIIVNDLNDNSPVFSPTTYPAYTISEDSSYP
VDLLAVYASDADSGINDDITYSIASGDLNNQFQINQDGVLSLVDALDREVNALYFLTIAA
TDGGSPPQFSTAVVVITVEDVNDNAPVFAQSSYTEYVDEDVTLYTTVLTPVATDPDSGLN
SEISFSILSGNDGNKFSIDPIYGYIFTIGSYDREVQDTYNLTIQAQDGESPFYTATSVVY
IRIVDINDNAPVFGQSTYQTDVNEDVAVGTSVITLSANDVDNGTNGEVNYFMSDTSVPFT
LDNTTGVLYTSGNLDRESVSSYSFLVYVRDQGTPQFSDQTTVTVYVLDVNDNTPNFTQTS
YSITIEENLAQGTSILTVSATDNDLGTNADISYSISTTSTLGLQFYNIDSTSGQISVKEA
NDRETLDFVQMFLVATDGGSPQLSSLVEVNVSISDVNDNAPILVQTFFSLEIRYDSSSLT
NLDTLSATDVDQGINGEIQYYLLDYTNLFHVDLLSGHFRKKDNSTLLEPDFKYVMTAVAR
DAGSPVLTSDPATLRVDTFRPEECLVDMVVALTYDQFLQVQDSFIAALTAVFAPGRIGVS
DVTTSSGTSRRRLLQSDSVTVSVYGVANSLTDSASGLSAAKSFMSADEILEVAQLDDSGT
PSAAISGQEFSNFPVTQVSRSIDNSVTTAATPFVQTPAGIAVLTISAVVGLILLILLVVC
CVGFCKRRNKNKVDK
NT seq
9048 nt
NT seq
+upstream
nt +downstream
nt
atgacgtcgctacaggtggatgaggatcagccaatcggcaccacagtgttgaccttggac
gtgagcgactctgacgccggtacggacggtgacctaacctacaccatcactgatgggaac
acgggctcctactttgaacttgacccgaagacgggagtgctggtggtcagtaagggtctg
gacttcgagacggcgggagggacgtacaacatcagtatccaggcggtggatggcgggaac
cctgcccgcagcgcggactcgtacgtcctggtcaccatcgggaacgtgaacgacaaccca
ccatcttgtacccagaccacgtacgtcgtccaagtacccgaggacgagacccccaacctc
attcctggttttgtcgacatggactgttccgacagcgacggtgacatacttacagacacc
atcatttccggagaccctgccggcaaattcattatcaggccaaacggcgcattcttcacg
atcttccccggcagtgcattggactatgacgaccccaactccacacctcggtcgtacgat
ctgatcgtgcaactgagcgatggcactacggctatagaagtgccggtcgtcatcggcgtc
actccggtcaacgaaggcgctccgaccatcaccgacgacacggtcactgtttccgaaaac
acgccgattggtgacgtcatctatgacgtcgatgattctgacccagacgccgatgaccag
gcccatggtatcgtgacgtatgcaatcacggggccggctacacacccattccggatagac
tcttccacaggcgagatctctgtggcatctacactggattacgaaacatcgaccagctat
gaccttgaagttgtggcaacggacggcggcgggctggcctccactgccacggtcacgatc
aacttcgacggcgtgaacgagttctaccccacgtgcacatcttctgcgttcggtgtatca
gtgagtgaaactgcggccgtcggagctcttgtcgtcgatttgggctgtactgacagtgac
agcggcttcgacgggtttttaacctacacagcgacgcagactccgtctacaaaattcgac
gtttcgacgggacagattcgagtgtcaactgcgttagactacgacggaggagaaacgctg
tattcccttgtcatcctggtaaacgataactcagtaataacggcgaatcagaaaacaact
acacttacagtcaccattgaagttacccccgaaaacgaagacacgccgtcattttctacc
ttggtatttccgctaaccctgtctgaagacatcagtattggtagtaccatcattgacttg
gatgctacagatacagatgcctcaaatcaggcccacggcattgtgacgtatagcattacg
tcaggggatcccaatggagacttcagcatcgacccgagcagcggagtgatcgtgacgaac
tcgcccctagactgggagaccactccgctgtacccgctcgaggtgtgggctacagacggc
ggcaccccggcgctgagcttatccacgtccgttataatcattctcgacgacgtaaacgac
aacacggcgcagtgcgtgcccgctgtgttctccgagacggtgtcagagagcgaggcggcg
gactacgttgtgacgtcgctctcctgtaccgacagcgacggggcgttcggagtcctgacc
tactccatctcggctggcgataccaaccagttctacatgaatgggtccgacctactgctg
accacgccgctggactatgatgcagttccgagacaatacaacctggagatcacagtcgca
gacaacggctctccgcccaactatgtcgtcatccccgttacggtacacgtggaccccgtg
aacgagtttcctccggtcttcgctctctccggggacgtcgttctcagcgtcgacgaggac
ttcaccgtgaacgatcccatcacgagcgtcgccgctacggacgcagactctgacgtcaac
gctcatggacagatcacctatactattctgtcaggaaacatcgatgcaaagtttagttta
gactccgacacaggtatcctatacttagtagacgagttagaccgagaaaccaaggcgtca
tacaacattgtagttcaagcctcggacggagtgcttttcaacgccggaacacctaacaca
atcaccaagtgggtcaacataaccgttaacgacatcaacgacaacgagccacagtgtacg
ccttcccattacgctgttacatttaacgagagcacggccacgggaaccttgataacaacc
gtcacgtgccaggatctgtttgacgctggaacgaacgcacagattcagtacttcttctcc
gggtctgggaacgtcggcaacgcgtttgccatcgaccaaacaaccgggcaaatcactctc
cagaatccgctggagtacgattctagctccgatccacagtcatactcgcttacggttcat
gcggtagaccagggtactacaaagctaacggggacggctcttgttacggtagcagtgagc
ccgtggaatgaagacactccgcagttttcagagaccgagtacgtggtttccgtgtcggaa
gacaccagtcttggcacttccgttcttcaaatcatagcgacggacaccgacgcaggagat
gacggcgttgttcacttcagcatggccgctcacagtactttcctgctagaagaaaccacg
ggttggctagttcttaaatccgcactagacagagaaagtacgtccttatacttcctacag
gttacagccacggatcaaccagccaacccagcggacgccttgtcagctgaagtaaacgtg
actattatcatcacagatgtgaacgacaatgcccctatcttccctacttcagcataccag
gtcacgcttaacgaaaacgacgcagtcggcacgtttgtagtacggcccaccgcgttcgac
tttgactccggtatcaacggaattctatactacgccattactgggggaaacacaaatacg
gacttctctatagatcagttcggtatcatcaccacagcccgagctcttgattacgagaca
accacgtcctactccttgacagtcaccgcaacggatcagggctcaacacctctctctgca
accacacaggttggtatcacaatcaccccttacaacgaattcgatccagcgttcggacaa
gcttcttacagcatcgccattgacgaagacacggctatcggaatctctattggtcaggtg
accgccacagatgccgactatggctcaaatggactgcctgatgatgtaacgtacagcttc
gcagccacgagcacgaagttctacattgatgagtacacgggtgacatcagggtgaagggt
gcgctagacaaggagacccaagacacgtacacgttaacagttgtagcgacggattctggt
accactccagccgtcaggtctaacagtgtcacccttacaattaccataggagacaccaat
gacaacgccccggtgttcagtccggcagcgtacaccgccgaagtgcccgaaaacgcaacc
gtcggctacaacgtcgtcaccgttatcgccagtgacagcgacctgggagttggtggtacg
ctggattacaacatcgtcgccggtaacgctccggataacatctttgccgttgattcaagt
ggcaacgtgttcgttacctccatagcatatctggactatgaaaccactacagtttacaca
ctgtccgtgaccgctaccgaccagggcacgcccaagttaacatccaccgccagggtaggc
attcaaatcaccgcaaacaacgagttcgacccagtcttttcaaacggaggctactacaca
gctacaatctccgaagacgccagtcttagtgacgcggtggttcgcaccacagcttctgat
gacgacgacggtttggatggtgacgtcacctacttcatcacatccgggaactctggcggc
aactttgcgatagattacgtcacaggttggataacggtggataaagagctcgaccgtgag
gtgaccagttcttacgtgctgacagttacggcgtacgacggagggtcatctccgagtagg
tcggcagacgcgactgtctacgtgaccgtggatgacgttaacgacaacgttccttcatgt
acgggctactactacgaccagacactggcagaatccgtaccggccggaacgtcgttgctg
cagctgacctgcagtgacccagatgaaggcgtgaatggagacctgacgtacaccatctcg
tcaggtgacctttacggacagttcaacgttgacagtaccgggcagctgaccgtcagcacg
ggactggactacgagaacacaacgcaatatcaactcaccatcactgttgcagacaatggt
tctccttccctgtccacggaggtggccgtaaccatggagataaccggagtgaacgagttc
cagccggttttcaccctgaacccgtacagtgtctccatcaacgagaacatctccctcgcc
acgtccatactggctgtctccgctcaggatgatgatgctggaacacagggaacaccaggt
gaaataaagtattacatcacatccgggaaccaagacggagcctttagtctggactacctg
tctggtgacctgagtactgcagctgtcctggacagagaggcattagatacatacgtactg
acagttgttgccgttgacggtggaacgtcgccgcagaggtcaggcaccagtaccgtgaca
atcaccgtcgaggacgctaacgacaacacgccgtcctgccagtctacctaccacacagtc
accgtacccgaaaacacaactctcaacaccgtgttactcacagtaaactgcagcgacaat
gacatcaaccaaaacacccaactgacgtacaccatcgtgaacggcagcgatggaagcatt
accatgtcgcctagcaacgctgatgtttatctagcggcatccttagactacgagaccacc
gacggctactacatccaggtggaagtgagcgacaatggatatcaaagtgacactgcgact
gtttatgtcagtgtggaagtgactggggtgaacgaagcagcacccgtatttgtgaacccc
agctatcaggtaagcgttgctgagaacgaaacagcaggagtggtcatccttcaagttaac
gctgcagactctgacttaggggatgacggtcggttcacatacagcataacgggtgggaac
aatgcggggatgttcgagatcagcgccacgaatggacaaataggaatcaagcgacgtctg
gacagagaagacactgattactacgtgctcaccgtcacggccaccgacatgggatctcca
gcgctatccagtagtgtctacgtttacgttaacgtcactgacgtgaatgacaaccagcct
tcatgttcttcatacgtcgtgaatattgaattggacgaagatgtcaacgtgggaacaaca
ttggcgtcctttaattgtacggaccaagacataagtaataacgccgacttatcgtacagt
attgtcagtggtgacacaactagccggtttgcgatggtactgaacgaactccaggttcta
aacttagattacgaaggtgatgactggtactacttgacactggctgttgttgacaatgga
tctcccgctctcagtgccaacattactgtatctgtacacgttaaccccgtgaacgaattt
acccctgtgttcaacgattcgtcctactcaaccaacctgtacgagaatataaccagcggg
actgtggtagtgaccgtcggcgccacagacggcgataggtccgaccaagcccaaggcatg
gtccgctactccatcgtgtcgggaaatacgggaaacaagttctccattgccgacgatacg
ggagagatatctgttgtgagacctctcgatcgtgagactacggacttctacaacctaacg
gtgagagtacacgataacgtatacggaggactcccacaactcaccgctgacgtccaggtg
gaaatcacggtgttggacgtagacgataatgctcccagtttcgagcccgaatcgtacacc
gtaagtgttgttgagggtgccgcagtaggtacacagttggccgtgcttacctacactgac
gcagacgatggcgtcaacgctatttccgttctgagtgtcacttctggaaacgggacgggc
ctcttttcactcgccggaaacaccctatccctgctagggccactagactatgagacggag
cagcaatacgtactgaccatacaagcgactgacgtgctggaaccatcattcacggataca
gcagaagtgatcgtcaacgtcatatccgaaaacgacaaccaaccagtgtttgccgtggac
aacacaacgatcaacgtgtccgaagacgccgcgctgggaactgtcctatacgacgctaac
gccacagacagtgacctgggagagcacagtgagctaacctactctatcgtgtccagtagt
tctcccaccttcctcatagacagcgtcacgggggcagtgagacttggcgcagcactagac
agagaaacactctcgtcttacgtagtgaacataacagcggaagacatcgactactacgac
tttatgttgttgtacgtcttcgtcacggacgtgaatgacaacaagcctgccatgactaac
accgtgtattcggtaacagttgacgagaaccaaccaataggaacaatcctcctgacagtt
ttggctacagatcctgacgaaggcaacaacagtgacatcacttacactacccgcggctct
gacgcaagcttcttttacgtcaacagcacaaccggtgacgtatctagccagaacacactg
gacttcgaaactaggaagtcgtattatttcttcgttagagcatatgacaatgggtcccca
cagctgtattcctcttggtccggggtgcagattatagtaaacgatctcaacgacaacagc
ccagtgttctctcccaccacttacccagcatacactatatcagaagactcctcataccct
gtagacctgttagcagtgtacgcgtctgatgcagactcaggaataaatgatgacattact
tactccatcgcatcaggagatctcaataatcaattccagataaaccaagatggcgtccta
agtctcgtcgatgcccttgaccgcgaggtcaatgccctctatttccttaccattgctgct
acggatggaggatcaccaccacagttttctacggctgtagttgtcattacagtagaagac
gtcaatgacaacgcgccagtctttgcacaatcttcctacacagaatacgtagacgaagat
gtcacactatacaccacagtactaactcccgtggccacagacccagacagtgggttaaac
agtgaaatctcattctctattctgtctggaaatgacggcaacaaattcagcattgatcct
atctatggatacatattcactatcggctcgtatgacagagaagtacaagacacatacaac
ctaacaattcaagcccaagatggagaaagtcccttctacaccgccacgtcagttgtgtac
atcagaattgtggacataaacgacaacgcccctgtcttcggacagtcaacctaccaaaca
gatgttaacgaagacgtcgccgttggaacttccgtgatcacgctcagcgctaatgacgtc
gacaacggcacgaacggagaagtcaactatttcatgtcggacacgtccgttccttttaca
cttgacaacacgacaggtgtgctttacacaagcggtaaccttgaccgcgaaagcgtctcc
tcctacagtttcttagtgtacgtgcgagaccaggggacaccacagttttcagaccagaca
accgttactgtatacgtactcgacgtcaacgacaacacaccaaacttcactcaaacgtct
tacagcatcacaattgaagaaaatctagcccagggtacaagcattttaaccgtcagtgct
acagataacgatttgggtaccaatgcggacatatcctactccatatctactaccagcacc
ttagggttacagttctacaacattgactcaacgtctgggcaaatctcagtaaaggaagct
aacgacagagaaacgttagactttgtgcagatgtttctggtggccacagacggagggtct
cctcagctcagctcattggttgaggtgaacgtgtcgatctctgacgtcaacgacaacgca
ccaatcctggtgcagacgttctttagtctggagatccgttacgacagtagcagtctcacc
aacttggatacactcagcgcgacggacgtcgatcaaggcattaacggagagatccagtac
tacctgctagactacaccaacctctttcacgtggacctactgtccggacacttccgtaag
aaggacaactccaccctactagagccggacttcaagtacgtcatgaccgccgtggccagg
gatgcaggttctccggtcctgacgtccgacccagcgaccctccgtgtggacacgttccgt
ccggaggagtgtctggtggacatggtggtggcgctgacgtatgaccagttcttacaggtc
caggattccttcatcgcggctctgaccgcagtgttcgcgccaggaaggatcggagtctca
gacgtcacaaccagcagtggcaccagtcggagacgtctgctacaatctgactccgtcacc
gtgtccgtgtacggggtcgccaacagcctcaccgactcggcgtccggtctgtcggcggca
aaatccttcatgtctgccgacgagattctggaggtggcccagctggacgattcgggaact
cctagcgccgccatttctggccaagagttctcaaacttcccagtgacacaggtttcacgg
tcgattgacaacagtgtgacgacggctgctacaccttttgtgcagacccccgccggaata
gctgtgttgaccatcagcgcggtggtggggctcatactcctcatcctattagtcgtctgc
tgtgtagggttttgtaagaggagaaataaaaacaaggtggacaagtaa
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integrated database retrieval system
