Branchiostoma floridae (Florida lancelet): 118416634
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Entry
118416634 CDS
T01074
Name
(RefSeq) probable ATP-dependent RNA helicase DHX58
KO
K12647
interferon-induced helicase C domain-containing protein 1 [EC:
5.6.2.6
]
Organism
bfo
Branchiostoma floridae (Florida lancelet)
Brite
KEGG Orthology (KO) [BR:
bfo00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
bfo04054
]
118416634
Enzymes [BR:
bfo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
118416634
Pattern recognition receptors [BR:
bfo04054
]
Cytoplasmic pattern recognition receptors
RIG-I-like receptors
118416634
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ResIII
DEAD
Helicase_C
RIG-I_C
RIG-I_C-RD
SWI2_SNF2
Motif
Other DBs
NCBI-GeneID:
118416634
NCBI-ProteinID:
XP_035677687
UniProt:
A0A9J7MR39
LinkDB
All DBs
Position
5:complement(11764669..11771842)
Genome browser
AA seq
971 aa
AA seq
DB search
MQEMRQQWELTAETPRSKPVGTPGIPTSPKQFHSPDTVGSLDKAPTLTELHQHAHDATNA
LHRMKHEQEEIQNEEKMTSVAEIQEQLDQHHLPDTVGSMDKTTSHMELQQQLQAAQVSAA
PARIHQGAAPNEGDDQYLMEVNKQWEQGQAMTSPKQAGILLRTPPQQHSNNNKSSTPTKS
SPSRHLDEDVVEDSPSNLQDVNEAASPQGYRTVHNITYQSPSSISTNIGQSPILSSGKSE
DLEVDSPTKPEELETGPAVRPKVRPTSSPHSDTARRASPIQQDVAQEDMPEGQYSGKVAL
REYQKELARSALLGKNAIITCATGSGKTLVSALVAERAWSEAKRKDLPFKALFIVPIRNL
TKQQKDQFEMLFPLGVVQEIGDTEELSETLKKRDIVMLTAQIVVNSLKAGSLDLTDLDQL
ILDECHHTTLDHPYNQIMRYYLLKKAELALANPHQKSLPQVIGLTASLGVGGSGNALQHL
IELSASLDASRVDHVKENKDELRRHVFTPDAIHILSGQPRKPHDPFSTALDSLMQRLESK
VFPDTCPYDRGTQQCENWIVERVKEAEAKTMRNELIVAQYLFDFNRALRLFTKLRAADAI
AFLDEKMYQSRAELKGPPKLPIDKFCYQQFDQIREELCVYAEEEETQFPNPMLQQLRSLL
IQKFNEPESYGIVLTQQRRETEAIVQYVEEQDVLQGKMRAKRLVGQGKLEDKAITDAQQM
AVLKSFRKGLSSEDGCNLLVATDVAQEGLDMPKCNFVIRYDFVSNEIGSVQARGRARAKD
AECYLLVTAGSTNERRELENQEKEAFMIEALNEMDQLTQVDFDSRVKAEQAKQLENWKVK
QKNKSTRRSLFEAKDVKVYCRQCNRAVCDGTHIVHKGSNYICREPSLPDKCEIVCKKPQV
YRTTDNIGLLFCGNPTCRNQYGPIIKYKKGQEETAYGMNVKSFLFDFGDGELRGIAKLSK
APFDITEELYE
NT seq
2916 nt
NT seq
+upstream
nt +downstream
nt
atgcaggaaatgagacagcagtgggagcttactgctgaaaccccaagaagcaagcctgta
ggtacacctggtatccccacatctcccaaacagttccatagccctgacaccgtgggtagt
cttgacaaagcccccacattaaccgagctccatcagcatgctcacgatgctacaaatgct
ttacacaggatgaagcatgaacaggaagagatccagaatgaagaaaagatgacaagtgta
gcagagattcaagagcagttagatcagcaccaccttccagacacagtaggcagcatggac
aagaccaccagtcacatggagttacagcaacagctccaggcagcacaggtatctgcagct
cctgctagaatccaccagggggcagcgccaaatgaaggagacgatcagtacctgatggag
gtgaacaaacagtgggaacagggacaagccatgacctcaccaaaacaggctggaatactg
ctaagaacaccaccacaacaacactctaacaacaacaaaagcagcacccccaccaagtct
tcccctagtcgacacctagatgaagatgtagtagaagattccccgagcaacctacaggat
gtcaatgaagctgcatctccccaggggtataggacagtccacaatatcacttaccagagc
ccaagcagcatcagtaccaacattggccaatctcctatcctcagcagtggcaagtcagaa
gacctggaagttgactcgcccaccaagcctgaagaactggagacaggcccagcagtcaga
cccaaagtaaggcccacatcttctcctcactctgatactgctaggagagcaagtccaatc
caacaagatgtggcacaagaagacatgccggaaggacagtattctggaaaagtagcattg
agagaataccagaaggagttggccagatctgctctcctggggaagaatgccatcatcacc
tgtgctacaggcagcggtaagaccctggtcagtgcattagtagccgagagagcctggagt
gaggcaaagagaaaagatctccccttcaaggccttgttcatcgtgcccatcagaaacctc
accaagcagcagaaggaccagtttgagatgctcttccctctgggcgttgttcaagaaatc
ggagacaccgaagagctcagtgaaacactgaagaaaagagacatagtgatgctgactgca
cagattgtggtcaactcgctgaaggcaggaagtctcgatctcactgacctcgatcagctc
atccttgacgaatgtcatcacacaacactcgaccatccgtacaaccagatcatgcgctac
tatctcctgaagaaggctgagcttgcactggccaatccccaccagaagagtttaccccag
gttatcggcttgacagcatcccttggtgtgggcgggtcggggaatgctctacagcacctg
atcgagctgtccgccagcctcgacgcttctcgcgttgaccacgtgaaggagaacaaagat
gaactgagaaggcacgtgttcaccccagatgccatacacattctgtcggggcagcctcgc
aagccacacgacccgttcagcacggcgctggacagcctgatgcagaggctggagagtaag
gtgttcccagacacctgtccgtacgaccgtggcacccaacagtgtgagaactggatagtg
gagagggtaaaggaggctgaagctaagaccatgagaaacgaattgatcgtggcccagtac
ctctttgactttaacagggcactgaggctgttcaccaaactgcgggctgcggatgcgatc
gccttcctggatgagaagatgtaccagtcccgtgcagaactgaaggggcctcccaaactg
ccaatagacaagttctgctaccagcagtttgaccagatcagagaggaactttgtgtgtat
gcagaggaggaggaaacccagttccccaaccccatgctgcagcaactcaggagtctgctc
atccagaagttcaatgagccagaatcctatggtattgtgctaacacagcagcgcagggag
accgaggctattgtccagtatgtggaggaacaggatgtgctacaggggaagatgcgtgcc
aagcgcctcgtggggcagggcaagctagaggataaggccatcactgatgcccagcagatg
gcagtgttgaagagttttaggaagggactttcatctgaggatggctgcaatctgctagtt
gccactgacgtagcccaagagggtttggacatgccaaagtgtaactttgtcatccgctat
gactttgtgtccaacgagattgggtctgtgcaggcccgaggcagggcacgcgcaaaggac
gcagagtgctacctcctggtaactgctggttccaccaatgaaaggagagaactagagaac
caggaaaaggaggcattcatgatagaggcacttaacgagatggaccaactaactcaggtg
gactttgactccagagtcaaggcagaacaggctaagcaattggaaaattggaaagtaaag
cagaagaacaagtccaccagaagaagcctatttgaagccaaagatgtgaaggtgtactgc
agacaatgtaaccgtgctgtctgtgatggcactcacattgtacataagggctccaactac
atttgtagggaaccctcccttcctgacaaatgtgaaatagtatgcaagaaaccgcaagtg
tatcggacaacagacaatattggtcttctcttctgcggcaacccaacctgcagaaaccag
tatggtccaatcatcaagtacaagaaaggccaggaggagactgcctatgggatgaatgtg
aagagcttcctgtttgactttggtgatggagagctcaggggtatcgccaagttgtccaag
gctccttttgacatcactgaggaactctatgaataa
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