Branchiostoma floridae (Florida lancelet): 118417066
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Entry
118417066 CDS
T01074
Name
(RefSeq) retinoblastoma-like protein 1 isoform X1
KO
K04681
retinoblastoma-like protein 1
Organism
bfo
Branchiostoma floridae (Florida lancelet)
Pathway
bfo04350
TGF-beta signaling pathway
Brite
KEGG Orthology (KO) [BR:
bfo00001
]
09130 Environmental Information Processing
09132 Signal transduction
04350 TGF-beta signaling pathway
118417066
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
bfo03000
]
118417066
Transcription factors [BR:
bfo03000
]
Eukaryotic type
Other transcription factors
Pocket domain Rb
118417066
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Gene cluster
GFIT
Motif
Pfam:
RB_A
RB_B
DUF3452
Rb_C
TFIIB
Motif
Other DBs
NCBI-GeneID:
118417066
NCBI-ProteinID:
XP_035678326
UniProt:
A0A9J7L982
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Position
6:11941772..11970536
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AA seq
1119 aa
AA seq
DB search
MAGPDEETPSTEQRYQDLCMDLNMDKIATEEAWQSFEKMSTNYTLEGDDLHWLACALYVA
CRKSLTPTVGRGTVEGNCVSLTRLLRSAKLSLIQFFNKMKKWADMASLPQDFRDKVDRLE
RNFAVSTVIFKKFEPIFLDLFRNPGDDQPRAPRGRKQRRLPCTSSDVFSFCWTLFVQVKG
NFPAISDDLVNSYHLLLCCLDLFFGNALCAGRKDLLNTEFPALPEGFTNRDWRSPSEPPC
IIDKLCELHDGLVLEAKGIKEHWWKPYIKKLFDKKTLKGRQETLTGLLDLATFEINNKSI
NKEYEEWVLTVGDFDERIFLGEDADVEIGTPAKPAPNITGELGERMVQSSHLKQHMAETK
SLAPSTPLTGRRYLKEKDPTVTPVSTATQSVSRLQALLAGLKTSPSDNLTKLFSECSRNP
QESISSRIKEMGEQFCTSYTQPSEDHPGSHIEFAQKRLRLAETLYYKVLENVMLQEKKRL
KGKLDLVSLMEQDVFHRSLMACCLEIIIFSYNSQRTFPWIIDVFGLSPYHFYKVIEVLIR
AEDGLSRDVVKHLNFIEEQILESLAWKSESPLWEAMKMNENAVPSCEEVTLPSQLENGHS
NTAVRMGQSPPVHPQVRRIARDTGVMLKKVESPLSPLSAHDRFSSPAAGSLGTAKRRLFS
NDQTNNAATTTSAQSQPATVQVVTTATDQGVQQTITQQTVAIPIPSGSGTITYLATLPIV
QQVQPGQQPQQIQLQAVPQGQQVPGAGVLGAMAQAVATGQQQAAPSQTAAVPHGTAAAAA
PASGEKAAAGEQHPHKRIGSLGLFFRKVYHLASVRLRDLCEKLEVGDELRRKMWTCFTHT
LKEHVELMRDRHLDQIVMCSIYVMAKVSANVTQHDKSFQDIMKCYRTQPQASSHVYRSVL
LHGDRERRSSGSSEGSGKTSPVTADKDKGNGERPIRSSSTLPVPAPSSAPPTPTRLAGLG
ATVDGDERGDLIQFYNTIFVTKLKSYVRKFSPTGDQKADSNIPQLSPIPLPRTHMQSPRR
VSVRHPIYISPHKNGRNFWRPLTPTSAMLYCFGKSPAKNLQDITSMIKSGEQPTKKRALN
YDTNENPAKRLCSAGGADRTLFQKLKDIDTVRQAANANQ
NT seq
3360 nt
NT seq
+upstream
nt +downstream
nt
atggcgggcccggacgaggagacccccagcacagagcagagatatcaggatctctgtatg
gacttgaacatggacaaaattgcgaccgaagaggcttggcagagcttcgagaaaatgagc
acgaactacactctggagggcgacgatctgcactggttggcctgcgccctgtacgtggcg
tgccgcaagagcctgacgccgacagtgggcagggggactgtggaagggaactgtgtctct
ctcacccgcttactcagatccgcaaagctaagtctgatccagttcttcaacaaaatgaag
aaatgggcggacatggccagccttcctcaagacttcagggacaaggtggaccgactggag
aggaacttcgccgtctccacggtcatcttcaagaagtttgagcccatcttcttagacttg
ttcaggaacccaggggatgatcagccaagggcacctcgtgggcgaaagcagagacgcctg
ccgtgcacttcatctgacgttttctccttctgctggaccttgtttgtccaagtcaaggga
aatttcccggcgataagtgacgacttggtgaactcttaccacctgctgctgtgctgtctg
gacttattctttggtaacgcactgtgtgcagggaggaaagaccttctcaacactgagttt
ccagcattgcctgaaggttttaccaacagggactggcgctcgccctcggagcctccctgt
atcatagacaaactgtgtgagctgcacgacgggctggtcttagaggccaagggcatcaag
gagcactggtggaagccttacatcaaaaaactcttcgacaagaagaccctaaaaggaaga
caggagaccttaactgggctgttggatctagccacttttgagatcaacaataagagcatc
aacaaggagtatgaggagtgggtcctgacggtcggggacttcgatgagcggattttcctg
ggcgaggacgcggacgttgagatcggaacccccgccaaacctgcaccaaacatcaccggc
gagctcggcgagaggatggtgcagagcagtcatctgaaacagcacatggccgagaccaag
tccctggccccctccacaccgctgactgggcgtcggtacctcaaggaaaaggaccctacg
gtcacgcccgtctccacggcaacccagagtgtcagccgcctgcaggccttactggctggg
ctgaagacttcccccagcgacaacctcaccaagcttttctcggaatgttccagaaaccct
caggaatccattagcagcagaataaaggagatgggagagcagttctgcaccagctacact
cagccatccgaggaccacccaggctcgcacatcgagttcgcccagaagcggctgagactg
gctgaaaccctgtactacaaggtgctggagaatgtcatgctgcaggagaagaagaggctg
aagggcaagctggatctggtgtcgttgatggagcaggatgtgttccacagatccctgatg
gcatgctgtctggaaatcatcatcttctcttacaattctcaaagaacgtttccgtggatc
atcgatgtgtttggcctgagtccgtaccacttctacaaagttatcgaggttctgatccgt
gcagaggacggactgtcccgagatgtggtcaaacacctgaactttattgaggaacagatc
ctggagagccttgcctggaagtcagagtctccgctctgggaggccatgaagatgaacgag
aatgctgttccatcctgcgaggaggtcaccctccccagtcagctggagaacgggcacagc
aacaccgccgtgcgcatgggacagtcaccgccggtgcacccacaagtacgcaggatcgcc
agggacactggggtcatgttgaagaaagtggagtctcccctgtcgccgctgtctgcacat
gaccggttcagctcgcctgctgcgggcagtctgggcacggccaagcgccgcctgttctct
aacgaccagacgaacaacgcagctacgacaacaagtgcccagtcccagccagccactgtc
caggtggtgacaacagccacagaccagggggtacagcagaccatcacacagcagactgtg
gccatacctataccatctggtagcgggaccatcacatacttggcgaccctgcccatcgtc
cagcaggtgcagcccggccagcagccgcagcagatccagctgcaggcggttccccagggc
cagcaggtgccgggggcaggcgtgctgggcgccatggctcaggccgtggccaccggacag
cagcaggcagctcccagtcagacagccgctgttccacacgggacagcggctgctgctgct
cctgcatctggagaaaaggcagcagctggtgaacagcacccgcacaagcggatcgggtct
ctgggacttttcttcagaaaggtgtatcacctggccagcgtgcggctgcgggatctgtgt
gagaagctggaggtgggggatgaactgcggcggaagatgtggacgtgtttcacacacacg
ctgaaggaacacgtggagctgatgagggaccgccatctggaccagatcgtcatgtgctcc
atctatgtcatggctaaggtatccgcaaacgtcacccagcatgacaagtctttccaggac
atcatgaagtgttaccgtacccagccacaggccagcagccatgtttaccgtagtgtgttg
ttacacggagaccgtgagagacgaagctcagggagcagcgagggcagcggaaagacatct
cctgtcacggctgacaaggacaaaggtaacggtgagcgacctatcagatcaagcagcaca
ttacccgtgccggccccgagcagtgcaccgcctacgcccacacggctggcgggactgggc
gccaccgtggacggagacgagagaggggacctgatccagttctacaacactatctttgtg
acaaaactgaagagctacgtcagaaagttctctcccactggggatcaaaaggcggactct
aacatcccccagctgtcgcccatccccctgccccgcacacacatgcagtcccccaggaga
gtctccgtcagacatcccatctacatctcaccccacaaaaacggtaggaacttctggagg
ccgttgacccccaccagtgcaatgctgtactgttttgggaaaagtcctgcaaagaatctt
caggatatcaccagcatgatcaagtcaggggagcagcccaccaagaagagagcgctcaac
tacgacacgaatgagaaccccgccaagcgactgtgctctgcgggcggcgcggacagaacg
ttgtttcagaaactgaaggatatagacacggtgcgacaggcagctaacgccaaccaatag
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