Branchiostoma floridae (Florida lancelet): 118417111
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Entry
118417111 CDS
T01074
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 1-like
KO
K14401
cleavage and polyadenylation specificity factor subunit 1
Organism
bfo
Branchiostoma floridae (Florida lancelet)
Pathway
bfo03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
bfo00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
118417111
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bfo03021
]
118417111
03019 Messenger RNA biogenesis [BR:
bfo03019
]
118417111
Transcription machinery [BR:
bfo03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
118417111
Messenger RNA biogenesis [BR:
bfo03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
118417111
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CPSF_A
MMS1_N
Motif
Other DBs
NCBI-GeneID:
118417111
NCBI-ProteinID:
XP_035678405
UniProt:
A0A9J7LA78
LinkDB
All DBs
Position
6:complement(14450939..14478791)
Genome browser
AA seq
1447 aa
AA seq
DB search
MYGVYKQTHTPTTVEHSVWCNFISAQEKSLVVAGTTQLHVYRLKGDMEVLTHSSSHQKSR
KQKMELVASFSMYGNIMSVESVQLAGSDRDALLLSFMDAKLSIVEYDPGTHDLKTASMHY
FEEEEVKDGYVSNYHAPMVRVDPEGRCAVMLIYGKRLVVLPFRKEGAVDEAEMSAGSKSS
ILPTYMIKLQDLDERLINVVDLQFLHGYFDPTLLILYEPLQTWPGRVAVRQDTCCIVAVS
LNIAQRVHPIIWSVGNLPFDCKQAVAVPKPIGGVLVFAVNSLLYLNQSVPPYGVSLNSIS
DQSTSFPLRIQEGVRIALDCAQASLISYDRLVISLKGGELYVLTLLIDGMRSVRGFHFDK
AAASVLTCCMCMLSPGYLFLGSRLGNSLLLKYTEKALEGDTGILDTADKVGEEPPTKKKK
PDSDWMPSDVSTMDVDEIEVYGSEKQTGTHISSYVFEVCDSIMNIGPCGRVTMGEPAFLS
EEFADNPDPDIELVTTCGYGKNGALAVLQRSIRPQVVTTFDLPGCLDMWTVIGIPPESKP
QEEGEKAESAGSEEKPEGEKEETKEEGPPDVDLTNSHGFLILSREDSTMVLQTGKEIMEL
DHSGFSTQGPTVYAGNIGNNKYIIQVSPYGIRLLQGVKQLQHLPFDSKGPAFVLASVADP
YALVMSEDGQILLLTLVNDPYGSGHRLSAKKIDMAGKSQAITVCAYRDTSGLFTVSSPST
TTPAPEVEKDAAEPAAEDAVAMETGVDDEDEMLYGEPSAKPSGPAVVREEVKPSTSTVQE
PVVKEVEPTHWCVICRENGSLEIYNLPDFSLVYLVKNFPTGMKLLVDSFQSTSSASTSQS
DKQGDQLASVKEILMVGLGHKGSRPHLLARVDEDLLIYEAFPYHLSPSYTMLKIRFKKVQ
HNLILRERKGGKTKKAGDQEESDGQTGSRIQHFRTFTDISGYSGLFICGSSPHWLFMTSR
GALRIHPMSIDGAVTCFSPFHNVNCPKGFLYFNRGGELRISVLPTHLSYDAPWPVRKVPL
RCTPHFVAYHMECKVYAVAASTFEMCNRIPRMAGDEKEYDAVEKDDRYIYPMLDKFNIQL
MSPVSWEIIPNTRHEFEEWEHISTMKNIPLKSEQYVSGMKGYIVAGTVSVQGEEVTTKGR
IVILDVIEVVPEPGQPLTKNKIKELYGKEQKGPVSALCGCNGYLLSAIGQKIFLWEFRNN
DLIGVAFIDTQVYIHTAISIKNYVILADVFKSISLLRYQSESKTLSLVSRDMRPLETYCV
EFFVDNAQIGFLVSDAQKNFLLYSYQPEARESYGGQRLVRRADFNVGSHVNTFFRVRCKI
MDPSGERRRDADTVAKRHVTMFATLDGGLGALLPMAEKTYRRLLMLQNTLMTHMPFPAGL
NPKAFRMLKHNHRSLINACRNILDGELLWKFLHLSVVERSELARKIGTSPETITEDLMDI
DRLSAHF
NT seq
4344 nt
NT seq
+upstream
nt +downstream
nt
atgtacggtgtgtataagcagacccacacccccaccacggtggaacattccgtttggtgt
aacttcatctcggcacaggagaagagtctggtggtggctgggaccacacagctccatgtc
tacaggctgaagggggacatggaggtacttacacactcgtcttctcaccagaagagccgt
aaacagaagatggagctggtcgcatcgttctcgatgtacgggaacatcatgtcggtggag
tctgtccagctggcagggtccgacagggacgcactactgctcagcttcatggacgccaag
ctgtccatagttgaatatgaccctggtacccacgatctgaagactgcctccatgcactac
tttgaggaggaagaagttaaggatgggtatgtgagtaattaccacgctcccatggtgcgt
gtggacccagaaggccgctgtgcagtcatgctgatctatggtaagcggctggtggtgctg
cccttcaggaaggagggggcagtggatgaggcggagatgtcagcgggcagtaagtcgtcc
atcctgcccacctacatgataaagctacaggacctggatgagaggctgatcaatgtagtg
gacctacagttcctccatgggtacttcgaccccaccctcctcatcctgtatgaacctcta
cagacatggcctgggagagtggcagtgcgtcaggacacctgctgtatcgttgccgtctct
ctgaacatcgcccagagggttcatccaatcatctggtccgtgggcaacctgccctttgac
tgtaagcaggcggtcgccgtcccaaagcccataggtggagtgttggtgtttgcggtgaac
tccctcctgtacctgaaccaaagtgtccccccatacggagtctccctcaacagcatatct
gaccagagcacatcctttccactcagaatacaggaaggagtgaggatcgccttagactgc
gcacaggcttccctcatctcctacgacagactggtcatatctctcaaaggaggggaactt
tatgtcctgaccctgctgatagacgggatgaggagtgttcgagggtttcacttcgacaag
gctgcagccagcgtcctcacgtgctgtatgtgcatgcttagcccagggtacctcttcctg
gggtccagactgggcaactcactgctgctcaagtacacagaaaaggcattggaaggggac
acaggcatactcgatacagctgacaaagttggggaagaacctccaaccaagaaaaagaag
ccagattctgactggatgccctcagatgtttccaccatggatgtggatgagatagaggta
tacggcagtgagaagcagacaggaacacacatctcttcttatgtcttcgaggtctgtgac
agcatcatgaacatagggccctgtgggagggtcactatgggggagcctgctttcctgtca
gaagagtttgctgataacccagacccagacatagagctggtgaccacttgtggatatggc
aagaatggagctctagcagttttacagagaagtatccggccccaggtggtgacgaccttt
gacctgccaggttgcctggacatgtggacggtgatcgggattccgcccgagtctaaacca
caggaggagggggagaaggcagaaagtgctggctcagaagagaagcctgaaggtgaaaag
gaggagactaaagaggagggacctcctgatgtggacctgaccaacagtcatggcttcctt
atactcagtagggaggactccaccatggttcttcagactggtaaggagattatggaactt
gatcacagtggattcagcacccaggggcccacagtgtatgctgggaatataggaaacaac
aagtacattatccaggtttcaccatatggaatccgacttctacaaggagtgaagcagtta
cagcacctgccctttgactctaagggccccgcctttgtcctggcgtctgtggctgacccc
tacgccctggtgatgagcgaggatggacagatactcctgctcaccctggtgaacgacccg
tacggcagcgggcacagactgtccgccaagaagatagacatggcaggaaaatcccaggcg
ataacagtgtgtgcgtatcgtgacaccagcggcctcttcaccgtctcctccccctccact
acgacacccgctccagaggtggagaaggatgcagcagaaccagccgcagaagatgctgta
gccatggaaaccggtgtggacgatgaggatgaaatgctgtatggggagccatctgctaag
ccatctggacctgctgtagttagagaggaggtgaaaccaagcaccagcactgtgcaggag
ccagtagtgaaggaggtggagcccacccactggtgtgtcatctgtagggagaacgggtca
ctggagatctacaacctgccagacttcagcctggtgtacctggtgaaaaatttccccaca
ggcatgaagctactggtggacagtttccagtctacgtcctctgcaagtaccagccagtct
gacaagcagggtgatcagctggccagtgtgaaggagatcctcatggtgggtctggggcac
aagggatcaaggcctcatctactggccagagtagatgaagacctcctgatatacgaggcc
tttccttaccatctgtctccatcttacaccatgctgaagattaggtttaagaaggtccag
cacaacctgatcctacgtgagcggaaaggcgggaagaccaagaaggcaggagaccaggag
gagtcagacggacagactggcagcaggatccaacacttcagaaccttcaccgacatctca
gggtactctgggctgtttatctgcggctcctctccccattggctgttcatgacgtcccgc
ggtgctctgcgtatccaccccatgagtatcgacggagctgttacgtgcttctcaccattc
cacaacgtcaactgtcccaagggcttcctatacttcaacagagggggagagttgaggata
tctgtcctgcccacccacctgtcatacgacgccccctggcccgtcaggaaggtaccgctg
agatgcactcctcacttcgtggcctaccacatggagtgcaaggtatatgctgtggctgcc
agcacttttgagatgtgcaaccggatccccaggatggcaggggacgagaaggagtatgat
gcagtagagaaagatgatagatacatctaccccatgttggacaagttcaacatacagctc
atgtcaccagtcagctgggagatcattcccaatacaagacatgagtttgaggaatgggag
cacatcagtaccatgaagaacatccccctgaagtcggagcagtatgtgtctggtatgaag
ggctacatcgtggcagggactgtgtctgtacagggggaggaggtcacgacaaaaggaagg
attgtgatcctggatgtgattgaagttgttccagagccggggcagcctctcaccaagaac
aaaatcaaggagctgtatggtaaggaacagaagggaccagtgtctgccctgtgtggatgt
aatgggtacctgctcagtgccattggacagaagattttcctgtgggagttccgtaacaac
gacctgatcggggtggccttcatcgacactcaggtgtacatccacaccgccatctccatc
aagaactacgtcatcctagctgatgtcttcaagagcatctcactcctcagatatcagtct
gaatcaaagactctgtcactggtcagtagggatatgagacccctggaaacctactgtgtg
gagttttttgtggacaatgctcagattgggttccttgtttctgatgcccagaagaacttc
cttctgtacagttaccagccagaagccagagaaagttatggtggtcagcgattggtcagg
agagcagatttcaacgtcggcagccatgtcaacacatttttccgtgtccgctgtaagata
atggaccccagcggagagaggaggagggacgctgacactgtcgctaagcgacatgtcacc
atgtttgcaaccctggatggtggcctgggagccctcctccccatggctgagaagacctac
aggagactgctgatgttacagaacaccctcatgacacacatgcccttccctgcagggctc
aaccccaaggctttcagaatgctgaagcacaaccacagatcattgatcaacgcatgtcgg
aacatcctggacggggagctgctctggaagttcctgcacctcagtgtggtggagaggagt
gagctggccaggaagattggcacttctcctgaaactatcacagaggacctgatggacatt
gacaggctgtcagcacacttctga
DBGET
integrated database retrieval system
