Branchiostoma floridae (Florida lancelet): 118417124
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Entry
118417124 CDS
T01074
Name
(RefSeq) protein CASC3-like
KO
K14323
protein CASC3
Organism
bfo
Branchiostoma floridae (Florida lancelet)
Pathway
bfo03013
Nucleocytoplasmic transport
bfo03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
bfo00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
118417124
03015 mRNA surveillance pathway
118417124
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bfo03019
]
118417124
Messenger RNA biogenesis [BR:
bfo03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
118417124
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Btz
Motif
Other DBs
NCBI-GeneID:
118417124
NCBI-ProteinID:
XP_035678427
UniProt:
C3XUF7
LinkDB
All DBs
Position
6:14165390..14168821
Genome browser
AA seq
650 aa
AA seq
DB search
MADRRRRRPSESEGEEGEEETLSTSQASLGSTEDPSHSGEDERDRRSPCESEGEHAEALS
EYESAEEDREADEDSQAEQGDSDTEHEDTRGDDDTETEDTQETEETQETGETLDTTKTTV
STDDSDKDKKLERQSGDGSEAPDSEDQAENLDDDEDRRNPAFIPRKGDFFEHDIRGEEDE
KQPGRPPVKGRKKLWQDEGKWQHDLFNEDEQRPKPVEELIAIYGYDPRRESSPDNIRPRR
GRRPPRGGGRGGRPPPRTLRDFVERPPPPRRGFPPRNRTDVQTRDRAHYTQDVRQWAANV
NNYRDNGPLDNVVSDENRNQPQVSRQKPSEERAVTNVMNNVTTSTNSMPKNGDNGVTVPP
VPVKAAVSTDSEHQYPAPQEKRSYTRYRRSAQGPRTSPPQQQQQQQHLRKRMENLSLQHG
EETAAQDRGHADGSPQHPEERHGPNRSDRPKRYSSLRQRPMPEQVVPPNMVKGVTYYNQG
YRGEQYARGSTPPVVDGPIQPHPTGPPAPPHQGMIVSDVNLPPGMAHPAMYNPTMTMAPP
VPPQLLPPPFFSAGGMVNYAAPPNPVSSYAPIPPAGPTAPTPNVPPVYTSPHPPSAQVVR
GVTYFNNQMPPQVLKRSPARRPNAAIPIEPPPDVRGDQTHSEEGGQPTEA
NT seq
1953 nt
NT seq
+upstream
nt +downstream
nt
atggcggacaggcgtcgacgtcgacccagcgaaagcgaaggagaagaaggcgaggaggag
acgctctcgacgtctcaggccagcctgggaagcacagaagacccctctcattccggtgaa
gacgagagagatcgccggtcgccctgtgagagcgagggagagcacgccgaagcgctgtct
gaatacgagagcgccgaagaggatagagaagcggacgaggactcccaggctgagcagggt
gacagtgacacagaacacgaggacaccagaggagatgatgacacagaaacagaagacact
caagaaacagaagagacccaagaaacaggagagacgctggacaccactaaaaccaccgtc
tccaccgacgacagtgacaaagataagaagttggagcggcaaagtggtgatgggtcagaa
gctcccgacagcgaagaccaggcggaaaatcttgatgatgacgaggatcgtcgcaacccc
gcgtttattcccaggaagggagacttcttcgaacatgatattcgcggggaggaagacgag
aaacagccaggccgcccacctgtcaaagggcgcaaaaagctgtggcaggatgagggaaag
tggcagcacgacttgttcaatgaggacgaacagaggccgaaacctgtggaggagctgatt
gcgatatacggctacgatccgaggagagagtccagtcccgacaatatccggcctagaaga
gggagaaggccgcccaggggaggggggcgcggcggacgaccacctccacggacgctgaga
gactttgtggaacgtccacctccaccacgtcggggttttcctcctagaaataggacagat
gtacagacaagggacagggcccactatacacaagatgtcaggcagtgggccgcaaatgtt
aacaattacagagacaatggacccttagataatgttgtaagtgatgaaaatagaaaccag
cctcaggtctctaggcagaagccaagtgaggagcgggctgtcacgaacgttatgaacaat
gtaactactagtactaattctatgcccaagaatggtgataatggtgtcacagtacctccc
gtgccagtgaaggctgctgtaagcacagatagtgagcaccagtatcccgcgccgcaggag
aaacggtcgtacacgcggtaccgccgcagtgcacaggggcccaggacaagtccgccacag
caacagcagcagcagcagcatctccgcaaacggatggagaatctctccctgcaacatggc
gaggagaccgcagctcaggatcgagggcatgctgacgggtcgccgcaacatcccgaggag
agacacggccctaaccgctccgatcggcccaaacgatattcctcgcttcgccagcggcct
atgccagagcaggtcgtgccacccaacatggtgaaaggggtgacctattacaaccaggga
taccgcggggagcaatatgccagaggaagcactccccctgttgttgatggaccgatccag
ccacaccctacaggtccccctgcaccccctcaccagggaatgatcgtgtctgacgtgaac
ctgccaccaggcatggcccatcctgccatgtacaaccccaccatgacgatggcgcctccc
gtccccccacagctcctcccgccccccttcttctcggcgggagggatggtgaactatgca
gcaccccccaaccccgtgtcctcgtacgcccccatccccccagccgggcccacagccccc
acccccaacgtccctccagtctacacttctccacatcctccgtcagcgcaggtggtacgg
ggcgtgacgtacttcaacaaccaaatgccgccgcaggtgttgaagcgatcaccggcgcgt
cgtccaaatgccgccattcccatcgagcctccgccagatgttcggggtgaccagactcat
agtgaagagggggggcagccaaccgaggcttag
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