Branchiostoma floridae (Florida lancelet): 118417145
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Entry
118417145 CDS
T01074
Name
(RefSeq) enhancer of mRNA-decapping protein 4-like isoform X1
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
bfo
Branchiostoma floridae (Florida lancelet)
Pathway
bfo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bfo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
118417145
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bfo03019
]
118417145
Messenger RNA biogenesis [BR:
bfo03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
118417145
mRNA degradation factors
5'-3' decay
Decapping complex
118417145
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ge1_WD40
EDC4_C
WD40
WD40_WDHD1_1st
Beta-prop_TEP1_2nd
Beta-prop_EDC4L
WD40_CDC20-Fz
WD40_Prp19
Beta-prop_EML_2
WDR55
PIN_8
Motif
Other DBs
NCBI-GeneID:
118417145
NCBI-ProteinID:
XP_035678445
UniProt:
A0A9J7LAA4
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All DBs
Position
6:12633749..12721576
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AA seq
1412 aa
AA seq
DB search
MDGGESSSTPSSLSTAEATQLLKDILNVGRTRDSDSSLSSARSMTSQNGAAEMGEAGSKA
SGGGGGEEEPDKPGEEERDATQEADQLTEDRQQILLQGDDTLGCVPIFGRDVDILSSSPP
DGTSSTSGSSRVKVIPVANYDWEHKYYMGSLVAINNTYIAYALKGKSHVVRVINRQTAER
TLLKGFVGSVTDLGFAHLGSSLLACTDQLGNLFIWQIYEDNQKIQYSKKLQVMRPESTPP
SNNHRLVWCPYIPEDGSASDTASSVASSAEERGRILALTHDENTEVWDVELVISQFGSDT
IQVKDVTTGYITVEGSSKAPIADCSLSPDGAVLATASQDGGVKFWQVNVYLESDDPPRCL
HKWQPHGGQPLSCLLFLDNHKLADPNMPFWRFLITGADYNRELKVWCTVSWTCLQTLRFG
SSPSPGLSSAEEEPCLKACMDLSASYLVLSDITRKVLYVLQVYQNADDGKAGIVSLAEYL
LTQPLLSFAIADASLRKFKSVNAEVEVEEDMTGGEGDHSASNDTGVLLKLFCVHTKSLQE
LQVRFKPATAASRPHQPQSIGSVSQDDIALRDGLSDMSVETLTDAEGSTSDLRGEGSQAS
PSVLEGRADREGTPVAEETSPPPEDNAEEPMLLTPAAFTHAERGDHTMRSSGSSMSSFTA
VTPMGNSVANSLDGSASAHSVAELQDILQASPESSLTLTPTSTKQGTPDGPSHVPTPTTL
PLPPLSPPEQKPLPPAVHARSPDLISSTSTSTDTPAASEALEQMFQQESQPRPPSSGSSL
EEVLSPRLRGAEGMSPRGRGAEGMSPRGRPEVAEEAEGATGGEERPDSGHEPVQDEYGLR
WPRAPDITMETARDRGHVEEASRTAQPELVASQTSSPPREQDLHNGQPMGRSPELQGAAA
ALPTTRHDQVLPGRSTPPKTVSPRVHRTEENYREVASPRTPPKRQAAEVSSAQLEQVLLL
LRQQQQELEQLRGDVQKQQAANQAVLTQAVTQQLKQLHVSTGTSVDKALQQHTQAERKRL
DEALRERQDLDKQKQERLLSTVSQTLNSSITSKLEKCVKQEVKNSVLPAVTKSLDPVKDQ
LNVTMAQKLTATDSLMKENISKLVRAKTTVEAIGQSAAQAIQGPVQAAYKDAFQSTVVPM
FEKACQSMFQQINDTFQRGTQDYLQQLEAHLAQQRQRQQQERDPVLTQLQGLVETFNSSA
SQLQDGITAGVKIELESQLQSTILNMQDVLISQVRRIVREEVSTALKEHQAALGESVVQA
MRSRNVTPVPTPQADTQQLQMQIMALLRQGQFNTAFQQALTASDLSLVMFVCEAVSPAQV
FSQSPCPLQQPVLLSLIQQLSVDLTHNTELKHRYLEESVMNLDLTHPVTCDHAAVVLSAL
CKKLNLFIQSEPNHKMIKNMRMLNMAAQSLMK
NT seq
4239 nt
NT seq
+upstream
nt +downstream
nt
atggacggtggtgaaagtagcagcactccctcaagtctgtccacagcggaggcgacgcag
cttctgaaagatatcctgaacgtggggaggacaagggactccgattcctccctgtcaagt
gctcgtagtatgacctcccagaacggggctgcagagatgggtgaagctggcagcaaggca
agtggaggaggaggaggtgaggaggaacctgacaaacctggggaggaggagagagatgcc
actcaggaggcagatcaactcactgaagacaggcagcaaatacttctccaaggtgatgac
acgctgggctgtgtgcccatatttgggcgtgatgtggacatcctgagcagcagcccgcct
gacgggaccagcagcaccagcggcagcagcagagtcaaggtcatcccagtggccaactac
gactgggaacacaagtactacatgggcagtctggtggccatcaacaacacttacatcgcg
tatgcactgaaaggtaagtcccacgttgtgcgagtgatcaacagacagacagcagagcgg
accctcctgaaggggtttgtggggagtgtgactgacctggggttcgctcacctcggctcc
tcactgctggcctgtacagaccagctgggaaacctcttcatctggcagatctatgaagac
aaccagaagatacaatacagcaaaaagttacaggtgatgcgccccgagagcaccccgccc
agcaataaccaccgcctggtgtggtgcccgtacatccctgaggacggcagcgccagcgac
acggcttcctctgtagcctccagcgcagaggagaggggcaggatcttagcacttacccac
gatgaaaatacagaagtgtgggatgtggagctggtgatctcccagtttgggtcggacacg
atccaggtgaaggatgtcaccactggctacatcactgtggagggcagcagcaaggcgccc
attgctgactgctccctgtctcccgacggagctgtcctcgccacggccagtcaggacggc
ggggtgaagttctggcaggtgaatgtatatctggagagtgatgaccccccacgatgtctg
cacaagtggcagccgcacggcggccagcccctcagctgtctcctgttcctggacaaccac
aaactggccgaccccaacatgccattctggcgtttcctgatcacaggggcagactacaac
cgtgagctgaaggtgtggtgcacagtgtcctggacctgtctacagactctcaggtttggt
agttctccaagcccaggactttccagtgcggaggaagagccatgcctgaaggcctgcatg
gacttgtctgcgtcttacctggtcctgtcagacattaccagaaaggtgctgtacgtgctg
caggtgtatcagaatgctgatgatgggaaagcagggatcgtctccctcgcagaatacctc
cttacccaaccactgctctcctttgccatcgctgacgcgtccctgcgtaagttcaagtct
gtcaatgcagaggtggaggtggaagaggacatgactggaggtgaaggtgaccattcagct
tcaaatgacactggtgttctcctcaagctgttctgtgtgcacacaaagtcccttcaggaa
ttacaggtcaggttcaaaccagccacagctgcctccaggccgcaccagccccagtctatt
ggctcagtctcacaggatgacatagcattgcgagatggtctatctgacatgagcgtagaa
actctgacagacgcagaggggtcaacctctgacctgagaggtgaagggtcacaggccagt
ccaagtgtcctagaggggagagcagacagggaggggacgcctgtagcagaggaaacaagc
cctccgcctgaagacaatgctgaagagcccatgcttctcactcctgctgcattcacacat
gcagaaagaggcgaccacactatgagaagtagtggctccagcatgagcagtttcactgct
gtaactcccatgggaaactctgtagccaactccctggatggcagcgcctccgcacacagt
gtagctgaactgcaggacattctccaggcttctcctgagagctctctgacactgacacca
acttcaacaaagcaagggacaccagatggccccagccatgtccccacccccaccaccctg
cccctacctcccctctccccaccagaacagaagcccctcccgccggctgtccacgcccgc
tcgccggacctcatctcctccacgtccacctccacggacacgcccgcggcctccgaggcg
ttagaacagatgttccagcaggagagccagcccagaccgcccagctcaggctccagtctg
gaggaggtgctgtcccccaggctcaggggggccgaggggatgtcacccaggggcaggggg
gccgaggggatgtcacccaggggcaggcctgaggttgcagaggaggcagagggcgccaca
ggaggcgaggagagaccagactccgggcacgagccggtacaggacgagtacggcttacgg
tggcctcgtgcgcccgacatcaccatggaaacggcgcgggaccgaggtcatgtggaggaa
gccagcaggactgcgcagcctgaactggtggccagtcagaccagcagtccacccagggag
caagacctacataatgggcagccaatgggcagaagccccgaactgcagggagctgctgcc
gccctccccaccacccgccatgaccaggtgttgccaggcaggtccaccccacccaaaaca
gtgtcccccagggtacacagaacagaggagaactacagggaagtggcatctcctcgaaca
ccacccaagaggcaggcagctgaggtatcatcagcccagctggagcaggtgctgctgttg
ctacggcaacagcagcaggagctggaacagctgcggggagatgtgcagaagcagcaggct
gccaaccaggctgtcctgacacaggctgtcacacagcagctcaaacagctgcacgtgtcc
acaggaacctctgtggataaggcactgcagcagcatacacaggcagagaggaaacgtctg
gatgaggctcttcgtgagcggcaggatctggacaaacagaagcaggagcgcctcctgtca
accgtctcccaaaccctcaactcctccatcacctccaaactggagaaatgtgtgaaacag
gaggtcaagaacagcgtcctcccagctgtgaccaagtccctggacccagtgaaagaccag
ttgaacgtgaccatggcacagaagctcacagcaacagattcactcatgaaggaaaatatc
tccaagttggtccgtgcaaaaactactgtcgaggccattggtcagtctgcagcccaggct
atccagggtccggtccaggctgcctacaaggatgccttccagtccaccgtagtgcccatg
tttgagaaggcgtgtcagtccatgttccagcagatcaacgacactttccagagaggcacg
caggactacctgcagcagctggaggcgcacctggcgcagcagcggcagagacagcagcag
gagcgcgacccagtgctgacccagctgcagggcctggtggagaccttcaacagcagcgcc
tcacagctgcaggatggcattactgcaggggtcaaaattgagctggagagccagctacag
tccaccattctcaacatgcaagatgttctgatctcccaggtgcggagaattgtgagagaa
gaagtttccacagcgctgaaggagcaccaggcagccctaggggagagcgtggtacaggcc
atgagatccagaaatgtcacaccagtacccacaccacaggcagacacacagcagttacag
atgcagatcatggcactgctcaggcaaggccagtttaacactgcattccagcaggccctg
acagcctccgacctgagcctggtgatgtttgtgtgcgaggccgtcagccctgcccaagtc
ttcagccagagtccctgtcccctccagcagcctgtcctgctgtcactcatccagcagctg
tctgtggacctgacacacaacacagaactcaaacacaggtaccttgaagagtcagtgatg
aaccttgacctgacccaccctgtcacatgtgaccatgccgccgtcgtcctcagtgcactg
tgcaagaagcttaatctattcatccagtcagagcccaaccataaaatgattaagaacatg
cgcatgttaaacatggctgctcagtctctcatgaagtag
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