Branchiostoma floridae (Florida lancelet): 118417302
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Entry
118417302 CDS
T01074
Name
(RefSeq) RNA-binding protein 39-like isoform X1
KO
K13091
RNA-binding protein 23/39
Organism
bfo
Branchiostoma floridae (Florida lancelet)
Brite
KEGG Orthology (KO) [BR:
bfo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
bfo03041
]
118417302
Spliceosome [BR:
bfo03041
]
Common components
Common spliceosomal components
General mRNP proteins
118417302
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RBM39linker
RRM_occluded
RRM_5
RRM_7
RBD_DEAH11
Motif
Other DBs
NCBI-GeneID:
118417302
NCBI-ProteinID:
XP_035678711
UniProt:
A0A9J7MSX7
LinkDB
All DBs
Position
6:13594904..13606970
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AA seq
554 aa
AA seq
DB search
MADDFDVEAMLEAPYKKEDISSKSSGDKDEERKKKRKKHSRSRSRSRDRRSRSRDKDRDR
RRSRSRDRRSKSRDRKRKSRSRSRGRYRDRFRRSRSRSPIRGGRYRQNFGGQPRQQTKPA
EQPRARSPKKKSKSKSPLRENGVTKDESGPQLSPEERDQRTVFVMQLSQRVRPKDLEDFF
SSVGKVRDVRLVSDHKSRRSKGFGYVEFGDKSSVPLAIGLTNQKLLGVPIIVQASQAEKN
RAAANSQNLQKGSSGPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIQLMKDSETGRSKGY
GFITFHDAECAKKALEQLNGFELAGRPMKVGHVTERSDAGAATSFLDSDELERTGIELST
TGRLQLMAKLAEGTGFEMPAAAQSALNMPMASLTGLPTLPGAGPGVAAPAGVMPAAGQQQ
PPPPPVPIPAYATPCFQLSNMFDIKMENAPNWDMEIRNDVVEECTKHGGVLHVFVDKNSD
NTADPLQGGEQSQGNVYVKCPNIQTAAACVNALHGRWFAGKMIQANYVPIVNYHALFPEA
ITATTLLQPASAQQ
NT seq
1665 nt
NT seq
+upstream
nt +downstream
nt
atggctgacgactttgatgtggaagcaatgctggaagccccttacaagaaagaggacatc
tccagcaagtccagcggtgacaaagatgaagaaagaaagaagaagaggaagaaacacagc
cgcagccgctctcgaagtcgtgacaggcgctcccgcagcagggacaaggacagagacagg
cgccgctcccggagccgtgatcgcaggtcgaagagtcgtgatcggaaaaggaagagccgg
tctcggagtcgaggacgttaccgggatcgcttccgaagaagcagaagccgcagccctatc
cgcggtggacgctacagacaaaactttggtggtcaacccagacaacagactaagcctgct
gaacaaccaagggctcgcagtccgaagaagaagtctaagtcaaaaagtcctttgagggaa
aatggtgttaccaaggatgagagtgggcctcagctgtctccagaagagcgggatcagcgc
acagtgtttgtcatgcagctgtcccagcgggtcagacctaaagatctggaagattttttc
tcatcagttggaaaggttcgtgatgtgcggttagtgtcagaccacaaatcacgtcgctca
aagggctttggctatgtggagtttggagacaaatcctcagtcccattggctattggtcta
accaaccagaagctacttggagtccccatcattgtgcaagcatctcaggcagagaagaac
agggcagcagccaactctcaaaacctgcagaagggcagctccggccccatgagactgtac
gtgggctccctgcacttcaacatcacagaggacatgctgaggggaatctttgagcctttt
ggaaagatcgacaacattcagctgatgaaggacagtgagacggggcgctccaagggatac
ggctttatcactttccacgatgcagaatgtgcaaagaaagcccttgaacagctgaatggg
tttgagctggcaggcaggcccatgaaggtggggcacgtgacggagcggtcagacgcagga
gcagcaacgtcctttctggacagcgatgagctggagcggacaggcatcgaactgagcacc
acggggcgtctccagctcatggctaagctggctgaaggaactgggtttgagatgccagct
gcagcccagtcagcgttgaacatgcccatggctagcctgacaggcctgcccacccttccc
ggggcaggaccaggggtagccgcccctgcaggggtcatgcctgcagcagggcagcagcaa
cctcctcccccacctgtacccatccctgcgtatgccacgccgtgtttccagctctccaat
atgttcgacatcaagatggaaaatgctccaaactgggacatggagatcaggaatgacgtg
gttgaggagtgtaccaagcacgggggtgttctgcatgtgttcgtggataaaaactctgac
aacactgctgatccattgcaaggaggagagcaatcacaggggaacgtttacgtgaagtgt
cccaatatccagacagcggcagcctgtgtaaatgccctacatggaagatggtttgcagga
aagatgatccaagccaactacgtgccaatagtgaattaccatgcgctgttccctgaagca
attacagctacaacgttgctgcagcctgcgagtgcacagcagtga
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