Branchiostoma floridae (Florida lancelet): 118418556
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Entry
118418556 CDS
T01074
Name
(RefSeq) probable ATP-dependent RNA helicase DDX27
KO
K13181
ATP-dependent RNA helicase DDX27 [EC:
5.6.2.7
]
Organism
bfo
Branchiostoma floridae (Florida lancelet)
Brite
KEGG Orthology (KO) [BR:
bfo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
bfo03041
]
118418556
03009 Ribosome biogenesis [BR:
bfo03009
]
118418556
Enzymes [BR:
bfo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
118418556
Spliceosome [BR:
bfo03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
118418556
Ribosome biogenesis [BR:
bfo03009
]
Eukaryotic type
Pre-60S particles
Helicases
118418556
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
Motif
Other DBs
NCBI-GeneID:
118418556
NCBI-ProteinID:
XP_035680446
UniProt:
A0A9J7MVI8
LinkDB
All DBs
Position
6:8711004..8722948
Genome browser
AA seq
812 aa
AA seq
DB search
MADWDHIGTIGDDDDVALAPESSDSDEDEVIPKPKRKRGNKKKNVDFTEEFQFEETELDV
EDSWNYEIDGLKHKAVATTLDEKIAQIRKERKKRKHQQVEGKEEESTEKRPAKKASKTLV
EKEGEDSDEDNDDEEEEEDNDDDDDGIEIVEEDDEDEEDDEDEDEEEKDAESDSAEEEVL
QQEPEDESEEETSSDEDTIADRIRIKEKKTKKKRKDNKVNEENGDDSEEENQTFFVDAPP
LDESITFQDMNLSRPLVKAISQMKFHHPTPIQKATIPVALLGKDVCACAATGTGKTAAFM
LPVLERLLYKPRQAPVTRVLVLAPTRELAVQVHQVSRQLAQFTSVEISLAAGGLDIRTQE
AALRLGPDVVIATPGRLIDHLHNTPSFDLKSIEVLILDEADRMLDEFFEEQMNEIIRLCA
RKRQTMLFSATMSDQVKDLAAVSLENPVKLFVNENTDVAFNLRQEFIRIRPNREGDREAI
IAARTFHDHCIVFIQTKLQAHRMHIILGLLGLNVGELHGNLSQTQRLETLKRFKDAEVDV
LLATDLAARGLDIQGVKTVINFTMPSTLKHYIHRVGRTARAGKSGRAVTLVGEKERRYLK
DVVKNARNPVKSRVVPQEVILKYRDKIEKMEKDVAEILRLEAEEKEMASTENKMNRAQNM
LNSPDNMAQQKRGWFQTHKERMEEKARLALGEPIAKGKKKGKHVKSAPLNAEDRVQLEMQ
KAQDFALRQAKRARKPKRIKAFYEKEEGAKPAKKMKKQNTGPKSTFDKELVDTSRKALKK
FRAGPSYEDRKRLGMSMKSKGNFKSKNRFKRR
NT seq
2439 nt
NT seq
+upstream
nt +downstream
nt
atggcggattgggatcacattggaacgatcggggacgacgatgacgtcgcgttagctcca
gagagctccgatagcgacgaagatgaggttataccaaagcccaaaaggaagagggggaat
aaaaagaagaatgttgatttcacggaggagttccagtttgaggagacagaactggacgtg
gaggacagctggaactatgagatagatggactgaagcacaaggctgtggcaaccacacta
gatgagaagatagcacaaatcagaaaagaaaggaagaaaaggaaacatcagcaagtggag
ggaaaagaggaagaaagtacagagaaaagaccagcaaagaaggcctctaaaactttggtt
gagaaagagggagaagattcagatgaggacaatgatgatgaggaggaggaggaggacaat
gatgatgatgatgatggtatagaaatagtggaagaagatgatgaggatgaagaagatgat
gaagatgaggatgaagaagaaaaagatgcagaaagtgatagtgcagaggaagaagtctta
caacaggaaccagaggatgagagtgaagaagaaacatcctctgatgaggacacaatagca
gacagaatcaggataaaagagaagaagacaaagaagaaaaggaaagacaacaaagtgaat
gaggagaatggtgatgactctgaggaagaaaatcagaccttctttgtggatgccccgccc
cttgatgagtccataaccttccaagacatgaacctatcaagacctctggttaaggccatt
tcccagatgaagttccaccatccgacccccattcagaaggctactatccccgtagccctt
ctgggtaaggatgtgtgtgcctgcgctgccactgggacaggtaagacagctgcattcatg
ctgccagtcctggagcgtctgctgtacaaacctcggcaggcgcccgtcaccagggtactg
gtgctggcccccacccgcgagctggccgtgcaggtgcaccaggtgtcgcggcagctggca
cagttcaccagtgtggagatcagcctggcagcaggtggactggacatccggacccaggag
gcggccctgcggctggggccggacgtggtgatagccacgcctggacgtctgattgaccac
ctccacaacacgccttccttcgacctcaagagtatagaggtgctcatcctggatgaagct
gacagaatgctggatgagttttttgaggaacagatgaatgaaatcatcaggttatgtgcc
aggaagagacagaccatgctgttctctgccaccatgtcagaccaggtgaaggacctggca
gctgtgtccctagagaacccagtgaagttgtttgtgaatgagaacaccgacgtggccttt
aatctgcgtcaggagttcatcaggatacgtcccaacagggagggggacagggaggccatc
attgcagcccggacgttccacgaccactgcatcgtgtttatccagaccaaactccaggcc
caccgcatgcacatcatcctgggactactgggactcaatgtgggggagctgcacgggaac
ctctcacaaacacagagattagagactttgaaaaggtttaaggatgctgaagtggatgtc
ctgctggctactgacctggctgctcgaggtctggatatacagggggtcaaaactgttatc
aacttcacaatgccaagcactctgaaacactacatccacagggtgggcaggactgcacga
gcgggcaagtctggaagggctgtcacattggtgggtgaaaaggagagaagatacctgaag
gatgtggtgaagaatgccaggaaccctgtgaagagcagagttgtacctcaagaggttatc
ctgaagtaccgtgataagatagagaagatggagaaggatgtggcggagatcctgcgactg
gaggctgaggagaaggagatggcttctactgagaataagatgaaccgtgcacagaacatg
ttgaacagtccagacaacatggcccaacagaagagaggctggttccaaactcataaggaa
cgtatggaggagaaagcacgcctggccttgggagaacccatcgctaaggggaagaagaag
ggaaaacatgtcaaatcagctcctctcaatgctgaagaccgtgtgcagttggagatgcag
aaggcccaggactttgccttgagacaggccaagagagccaggaaacccaagaggatcaag
gccttctatgagaaggaggagggggcaaagcctgctaagaagatgaagaagcagaacaca
gggcccaagtctacctttgataaggagttggtggacaccagtaggaaagcactgaagaag
ttcagggcagggccttcttatgaagacaggaaaagacttggcatgtctatgaagtctaaa
ggaaacttcaagtccaaaaataggttcaagagaagatga
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