Branchiostoma floridae (Florida lancelet): 118418895
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Entry
118418895 CDS
T01074
Name
(RefSeq) PAN2-PAN3 deadenylation complex subunit pan3-like
KO
K12572
PAB-dependent poly(A)-specific ribonuclease subunit 3
Organism
bfo
Branchiostoma floridae (Florida lancelet)
Pathway
bfo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bfo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
118418895
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bfo03019
]
118418895
Messenger RNA biogenesis [BR:
bfo03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
118418895
mRNA degradation factors
3'-5' decay
Pan complex
118418895
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pan3_PK
Pkinase
Motif
Other DBs
NCBI-GeneID:
118418895
NCBI-ProteinID:
XP_035680907
UniProt:
A0A9J7LEB2
LinkDB
All DBs
Position
7:7411217..7425062
Genome browser
AA seq
686 aa
AA seq
DB search
MYRSDSGGGGDVPHTMDNHMNSNSSPNVNGAVQNARPFFPAEGQAPPQEAPAVLNNFSSL
SISSNKGGKIKGVDAHEFIPGNRMSAASSVPSMTGLGVSMSSPSLSTMLFTAQPHTPAAA
GAAVPSGASLSAGASPLGSPLSSPGANRRKPPYSGSYDFIPGQTSTPGGTMQQQAMGPAS
SAPAMHDFGGTTYFYTAGSQHARHSPLPAALLPGGHLFHLPHTALMKPKANQPSFFMQDE
LRLDTLRRQYLLAAQIDPVQHPDIPSEVDNYHTLYPLEPVPRDPKHRSSTFGFITSCYKG
ISAKDAMAYCLTRIHGFHMVNSKCMLFTDMWKKIQHSNIVQLREVFTTKAFGEHSLVFVH
DYHPGAETLMAHHFNNPQQNKDFFEGTAASKGMVNGPRQHAGLLPESLIWCYVVQLSSAL
RTIHAAGLACRVMDPTKILITGKSRLRVNCVGIFDVLTFDVNQSNPMALIPQFQQEDLLS
LGKVVLALACNSVAGIQREFLQKAMELVTLNYSSDLKNLILYLLTNQGRPKSVNDIMPMI
GARFYTQLDAAHMRCDVIESELAKEVENGRLFRLLCKLGIINDRPGLGLDSDWSETGDRY
LLKLFRDYLFHQVTESGEPWIDMAHVVQCLNKLDTGVPEKLCLVSRDEQSVLVLNYHDLK
RCFEQAFQEVLTASQPGEQPPTSLHQ
NT seq
2061 nt
NT seq
+upstream
nt +downstream
nt
atgtatcgcagtgacagcggtggtggaggggacgtcccccataccatggacaaccatatg
aattccaacagcagtccgaacgttaacggagctgtacagaacgccaggccattctttcct
gcagaaggacaagctcctcctcaggaagcaccagctgtgctcaacaacttctcctctctc
tcaatctcttcaaacaaaggtggcaagattaagggagtggacgctcatgagttcatccct
gggaacaggatgtccgctgccagctcagtgccgtcgatgacagggctgggtgtgagcatg
tctagcccctcgctgtccaccatgctgttcactgcacagccacacacgcctgctgcagct
ggagcagcagtgccctctggtgcttccctgtcagcgggtgcctcccccctcgggtccccc
ctgagctccccgggtgcgaacaggcgcaagccgccgtactccggtagttatgacttcatc
cccggccagaccagcactcctggtggcaccatgcagcagcaggccatgggaccggcatcc
tctgcacctgccatgcacgattttggcggtacgacgtacttctacacagcaggctcgcag
catgccagacacagcccgctgccagctgcactgctgccaggtggccacctgttccacctg
ccccacacggcgctcatgaagcccaaggccaaccagccgtccttcttcatgcaggatgag
ctgcgcctggataccctgcggagacagtacctactggctgcccagatcgatccagttcag
cacccagacattcctagtgaggtagacaactaccacaccctgtaccccctggaaccagta
ccgcgggaccccaaacacaggtccagcaccttcggtttcatcacctcctgctacaagggc
atcagtgccaaggatgccatggcgtactgccttaccagaatacatggtttccacatggtg
aactccaagtgcatgctgtttactgacatgtggaagaagatccaacattccaacattgtg
cagctgagggaggtgttcactaccaaggcgtttggtgaacactctctggtgtttgtgcat
gattaccaccccggggcagagaccctcatggctcaccacttcaacaacccgcaacagaac
aaggacttcttcgaggggacggctgccagcaaaggaatggtgaacggaccgcggcagcac
gcaggcctgctcccggagagcctgatctggtgttacgtggtgcagctcagctcggcgctg
aggacgatccatgcggcggggctggcctgtcgtgtcatggaccccaccaagatcctcatc
accggaaagtcaaggttacgtgtgaactgcgttggcatttttgatgtactgacatttgat
gtcaaccagagcaatccaatggctctcattccacagttccagcaagaggacctgttgtca
cttggcaaggtggtgctggctcttgcctgcaattccgtggctggcatccagagggagttt
ctgcaaaaggccatggagctggtgaccttgaactactccagtgacttgaaaaatctcata
ctctatctgttgaccaatcaggggaggccgaagagtgtgaatgacatcatgccgatgatt
ggcgctcgattctacacacagttggatgcagctcacatgcggtgtgacgtcatcgagtca
gaactggctaaggaggttgaaaacggccgtctgttccggctattgtgcaaactgggcatc
atcaatgacaggccagggctgggtctagactcggactggtcagagacaggtgacaggtac
ctgctgaagttgttcagggactacttgttccaccaggtcactgagtcgggcgagccatgg
atcgacatggcgcacgtggtgcagtgcttaaacaagctggacacgggagtgccggagaag
ttgtgtttggtctcgcgtgacgagcagagcgtccttgtgctcaactaccacgacctgaag
cgctgcttcgagcaggccttccaggaggtgctgaccgccagccagcccggcgagcagccg
cccacctccctccaccagtag
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