Branchiostoma floridae (Florida lancelet): 118419083
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Entry
118419083 CDS
T01074
Name
(RefSeq) uncharacterized protein LOC118419083
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
bfo
Branchiostoma floridae (Florida lancelet)
Pathway
bfo03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
bfo00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
118419083
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bfo03021
]
118419083
03019 Messenger RNA biogenesis [BR:
bfo03019
]
118419083
Transcription machinery [BR:
bfo03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
118419083
Messenger RNA biogenesis [BR:
bfo03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
118419083
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CID
Pcf11_helical
zf_PCFS4
Pcf11_C
zf_UBZ
Motif
Other DBs
NCBI-GeneID:
118419083
NCBI-ProteinID:
XP_035681256
UniProt:
A0A9J7MWD0
LinkDB
All DBs
Position
7:25733823..25754984
Genome browser
AA seq
2440 aa
AA seq
DB search
MADAVVEEYESSLADLTFNSKPHINMLTMLAEENVKYAPHIVRLIEAQLNKATSSEKLPV
MYLMDSIVKNVGGDYCTLFSQNIVSTFCNIFEQVDEKTRMSLYKLRSTWDTIFTSKKLYA
LDSRVQGIDPAWPVKPLPAEMQVSTSIHVNPKFLKKQESDTAAMQQQLQEQQEQLLREQL
IAKQQELLKMQQARLEMELLQTRAKLDEQTKTLHTRPQVTPQPAVPLPSFSQVATSLPTT
SVPTSAARDPRLASRDPRLARQPASQPASTMPQYNTGAFPSTSMAAQSWLASGTHSPVPQ
PLVGGAGPLAERISANQQKRGGEPIIVPVAQPALDETSSTEKKPAQQKVQKPQEKAKTKT
ETKVSSPKKSSTSAKDQKGKDTKSKDNKDKTKKDDSKSKPAAKTEKKDDKKKDEKKPDPK
STRGKRNYRTRRSDEDNKDDKDSKSRDSKDKKDEQKSRNEKTRTSSGSSSSRRGSRSSPD
RSTRRRSTSKSSSHSPRAKSRSRSPVRRHSSRSISPKERRSSRSGRQDRTPPRSSRTTHE
SSKDKDDKAKAKTSDTKSKAGTKRSMEKENKSKIKKEPQEAKPGNKYEQSQDYGIGSPKF
SPEPESDAEEPVPKRFRLADRDFPRRAWPLPLQSNVRQEPRARRPSISSLPRIPRKPAGT
PTRRMSIDPDLKIPKELTLEKQQQILKQAEQQFRTGELTHQQYQEMLKQLHVLYELQRQR
QEQMQQQDGQVNRVERREDCVRGGRMGRGRGRGLLPTPPSPWAELKRQPSVEAKSPWAEY
KKSHPSERDFQFPVKEEKDGASDQAQQAYLEHRKKLEERKSYLEHKNKLRKTPLYLERRQ
DYPFRDFPMDVDERQGAAGHGRGREGVGFEGMHRRALLPYLGQQDGSPRPSDDGRREDPR
LRRADDRGAPDFRGEEDRRRWEEWKKFDDQVCKQWNFEYRKWEEEIKKWEDSGRQGARPL
APHEVYGRGKQEFDPKKEEEYRRWQDDIRRWEQDGRNGPPPPAPQESLPLGPELLERLEN
DRRQWAEERAKFLKELNIWEQKMERWKKFGNGPPPQRPQEPEHRGLPVDRRWEEDRQRFE
NELRKWDADMAMWEKNGRRGAPPLRPKEPSLPTSTPVVFMERQGFPPDSQFDRPSRTWEE
DHRRWEEDMCRWEQGGRKGQPPQEPLRPPQFDQPNQRLEDHRRREHEGRKGQFERWQDDH
RRWEEDMRRWEQDGRKGQPPQEPLPPLQFDKAELEAEHRRWHESRGRFEAELKKWEENGR
RAPPPPSHMDMPPPLGPEMPEVARKQWTLDCQHWQDQMRGWEQGGRQGPPPSPPYHLLSQ
ALEINDAARRQWEEDHRRWEEDMKRWEADGRRGLPPQEPVMQMPGAQQHLSALQKPEPEW
REFEDKRRQWEEEMRRWEAGGRRGAPPAEPVPPRVQSPGIQNRNSQWEEDHRKWQDDMKR
WELDGRRGLPPIEPIHPSNQGQQGPAAAQREWEQRHRRWQEDMRRWEADGRREMPPPEPQ
PPRLEEDPRREVALREWESNCRQWEEDMRRWEEGGKRGAQPIKPILHLPQANVALIEWEA
QHRRWKEDMQRWEMDGRRGVPPTEPLRPPAPDHHPDNSHQTFQDRHRMWEQDMDRWEKGG
RKGQAPLEPLPPLPPKNVLSEEERKKLDEEHHMWEEAMTRWVEGGRMGPPPPAPGEQEEV
PRPLIPGLSGARMGGPRMDGPGPGPRMDGLGPRMDGPGPRMDGHGPRMDGPGPRMDGPGP
GPRMDGPGPGPRMDGPGPLPRMDGPGHRMDGPGHRMPGPGFRMDGPMQRPGQFGMMQPGL
VSSAAGPIMSGPGPIMSGPMGGMPFSGPGPANVFGNMVMGVATTMQLAMGGMGMTGQPMQ
GRPPMQPMPGPSHMSMGPMPGIPVHHPPMGFGMAPPPAPGPSLQPAKLDVNQLFEKLLKT
GIIKKVDEKKEEPKVEEKTVEAKKEEKTRVVVPLEERMEEDEPRAELKLDTTVPPLTLRV
EDLKTRHKGVINRLYCGIQCSSCGSRFLPEETDKYANHLDWHFRMNRREKEGTGKASHRD
WYYGVDDWIAYAELGDDEEVQESAFFEQPVLPTSEPGEVISCPVCTDEENDDICDICQEP
FEQFWDEDEEAWHLKDAVRVNGKTYHPNCYEDYDESFLETPTPADAPKESPLEAQIKMET
NAEEAVQVKEEPMDTAEEEEKPSTSAMQPLSTIKEIPFLSEEAKEQTNIKEEVSENMEVG
ETEQVKTETPDIEVKEEPKSPLGNQCEAMVPAQVDNVTIKQEPEEENGPAQPDNDNEQTT
DQIAVKQEVVDNPVKTEPPTPVSVKKEVEEENVSTAVKEESVTENVKVERVSPSPMEVPL
VEPKVEQVDENRGQAISTIGGGTKIPVVGGASPLRGSAISVVGGGSSPARFRSNSPMRSI
PVIGASSSPNRTGQSTAKSETAQKPKTGSFFKLDPSAKTK
NT seq
7323 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgcagtggtggaagagtacgagtcgtccctggctgacctgactttcaacagc
aagccccacatcaacatgctgacgatgctggccgaggaaaacgtgaaatatgcgccacac
attgtcaggcttatagaggcacagttgaacaaggccacgtcatcggagaagctgcctgta
atgtacttgatggattccattgttaagaacgttggaggcgactactgtaccctcttctcg
cagaatatcgtttcaacattttgtaatatctttgagcaggttgatgagaaaacacgaatg
tccttgtataagttgcgctccacttgggacactatcttcacgtcaaagaagttgtatgcg
ttagacagtcgtgtacaaggtattgaccctgcctggcccgtaaaaccgttgccagcagag
atgcaagtgtccacaagtatacatgtcaacccaaaatttctcaagaagcaagagtcagac
accgctgccatgcagcagcaactccaggagcaacaagaacagctgctgcgcgaacagctc
atcgccaagcagcaggaactactgaagatgcagcaagccaggctggagatggagctccta
cagaccagggccaagctggacgagcaaaccaagactctacacacacgtccacaggtaacc
ccccagcctgctgtgccgttgccaagcttctcacaggttgctacttctctgccaactacc
tcagtccccacgtcagcagctagagatccccggttggccagtcgagatccccggctcgca
aggcagccagccagtcagccagcttcaacaatgccacagtacaacactggggctttccca
agcacttcaatggctgcacagtcctggttggcttcaggaacgcattctcccgtgccacaa
ccgctggtagggggtgcaggccctttagcagaaagaatatcagccaaccagcaaaaacgt
ggtggggagcccataattgtaccagtagcacaacctgcattagatgaaacaagcagcact
gagaagaagccagctcagcagaaagttcagaaaccacaggagaaagccaaaaccaagaca
gagacgaaagtttcatcaccaaagaagagttccacaagtgcaaaagaccagaaaggtaaa
gacacaaaatctaaggacaacaaagacaaaaccaagaaagacgactccaagagcaagcct
gctgcaaagacagaaaagaaagatgacaaaaagaaagacgaaaagaaacctgatcccaaa
agcacccgaggaaaacgtaattacaggacccgtagaagcgacgaagataacaaagatgac
aaagacagcaagtccagggactctaaggataagaaggatgaacagaagtctagaaacgag
aagaccaggactagcagtggcagctcaagtagcaggcgtggttcaaggtcatcccccgat
cgttccactcgtcggaggtcaacttcaaaaagtagctcccactctccaagagctaagtca
aggtcgcggtccccagttcgaaggcacagcagtcggtcaatatcgcccaaggagcgccgg
tcaagccggtccggaagacaggatagaacgcctccaaggtcaagcaggactacccatgag
tcatccaaagacaaggatgacaaagccaaggcaaagaccagcgacacgaagtccaaggct
ggtaccaagcgaagcatggagaaagaaaacaaaagcaagatcaagaaggagccgcaggaa
gcaaaaccaggaaacaaatatgaacaaagtcaggactatggtattggcagtccaaagttt
tccccagaaccagaatcggatgctgaagaacctgtacccaagagattccgcttggctgat
cgggacttcccaaggagagcttggccgttgccgctacagtcgaatgtgagacaggaacct
cgggccagacggccgtccatcagctcgctgcccagaatccccaggaagccagctggaacg
cctacaagaagaatgagcatcgatccagatcttaagatccccaaagagctcactctggag
aaacagcagcagatcttgaaacaggctgagcaacagttccggaccggggagctgacccac
caacagtaccaggagatgttgaaacagctccatgtgctgtatgagctacagaggcagaga
caggagcagatgcagcaacaagatggacaggtgaacagagtggagaggagagaagactgt
gtaagaggcggacggatgggtagaggcagggggaggggactcctccccaccccaccatcc
ccatgggcagagctgaagcgtcagccctctgtcgaagcgaagtccccttgggcagagtac
aagaaaagccatcccagcgagcgagatttccagttccccgtgaaggaagaaaaagatggg
gccagcgatcaggcgcagcaggcctacttagaacacagaaagaagcttgaagaaagaaag
tcatacttggaacacaagaacaagctaagaaagacacctttgtatcttgagaggagacag
gattacccattcagggatttcccaatggatgttgatgagcgacaaggtgcagcaggacat
ggtagaggaagggaaggcgtagggtttgaaggaatgcaccgaagagcgctgttgccatac
ttgggacagcaagacggttctccaaggccttcggatgacgggaggagagaggatccacga
ctccgcagggcggatgacagaggagcaccagacttcaggggcgaagaggacaggagaaga
tgggaagagtggaagaagtttgacgaccaagtttgcaagcagtggaacttcgagtacagg
aagtgggaggaggagattaagaaatgggaagacagcgggagacagggtgcccgcccgcta
gctccgcacgaggtgtacggccgaggcaagcaggagtttgatcccaagaaggaggaagag
tacaggaggtggcaggacgacatccgtcggtgggagcaagatggaaggaatggtcctcct
ccccctgccccacaggaaagtctgcccctgggtcccgagctcttagaaaggctggagaac
gatcgtcggcagtgggcggaggagcgtgccaaattcctgaaggagcttaacatttgggag
caaaagatggagcgctggaaaaagtttgggaatgggcctcccccacaacgaccccaggag
cctgagcatcgtggtctacctgtggacagaaggtgggaggaggaccgccagagatttgaa
aatgagctgaggaagtgggatgcagatatggcaatgtgggagaagaatggcagaagagga
gcccctcctctccgtcctaaggaacccagtctgcccacatcaacacctgtcgtcttcatg
gagagacaagggttcccacctgacagtcagtttgacagaccgtccaggacttgggaggag
gatcatcgcaggtgggaagaagacatgtgcaggtgggagcaaggaggacgaaagggccaa
ccgccacaagagccactacgtccccctcagtttgatcagccaaaccaaaggttagaggac
catcgtagacgggaacacgaggggaggaaaggccagttcgagaggtggcaagatgatcat
cggagatgggaagaagacatgcgcagatgggagcaggatggaagaaaggggcagccccca
caggagcccctaccgccacttcagtttgacaaagccgaactggaagcagagcacagaaga
tggcacgagagccgtggacggttcgaggccgaactgaagaagtgggaagagaatggaagg
agggctccccctccaccctcacacatggatatgccgcctcccctcgggcccgagatgccg
gaggtggcgcgtaagcagtggacgctggactgccaacactggcaagaccagatgcgaggt
tgggaacaaggtggcaggcaagggccgcccccctcccctccctaccacctgctgtcccag
gccctggagataaacgacgctgcccgccgacagtgggaggaggaccacaggagatgggaa
gaagacatgaagagatgggaagcagatggcagaagagggttacctccacaggagccggtg
atgcagatgcctggagctcagcagcacttgtcagcattgcagaaacctgagcctgagtgg
agagagtttgaggacaagcggcggcagtgggaagaagagatgcgcagatgggaagcagga
gggcggagaggtgctcctcctgcagagcccgttccccctcgtgtgcaatcccccgggatc
cagaaccgtaactctcagtgggaggaagaccatcgcaagtggcaagacgatatgaagagg
tgggaactggatgggagaagaggcctacctcctattgaacccatacatccttcaaaccaa
ggccagcaaggccctgcagctgctcaaagagaatgggagcaaagacatcgtcggtggcag
gaggatatgaggagatgggaggctgacggcaggagagagatgcctccccctgaaccccaa
ccaccacggctagaggaagatccacgtcgcgaggtcgccctgagggagtgggagtccaac
tgtcgtcagtgggaggaagacatgaggagatgggaggagggcggcaaacgaggagcgcag
ccaatcaaacccatcctgcaccttccccaggcaaatgtggcgctcatcgagtgggaagcc
cagcaccgtcggtggaaggaagacatgcagaggtgggagatggacggcaggaggggagtc
ccgccaacggagcccctccgcccgcctgctccagaccatcacccggataattcccatcag
acatttcaggacaggcaccgcatgtgggagcaagatatggacaggtgggaaaaaggtggg
cgcaagggccaagctcctcttgagcctttaccacccctccctcccaagaacgttctttct
gaagaggagaggaagaaactggatgaagagcaccacatgtgggaggaggccatgacaaga
tgggtggagggtggccggatgggccccccacccccagccccaggggaacaggaagaagtc
ccacggccactgatccctgggctgtctggagctaggatgggaggtcctagaatggatgga
cctggtcctggacctagaatggatggtcttggacctagaatggatggtcctggacctaga
atggacggtcatggtcccagaatggatggtcctgggccaagaatggatggacctggtcct
ggaccgagaatggatggacctggtcctggaccaagaatggatggacctggtcctttgcca
agaatggatggacctggacatcgtatggatggcccaggacacaggatgccaggacccggg
ttcagaatggacggccccatgcagaggcccggacagtttggaatgatgcagccaggactg
gtgtcatcagctgctgggcccatcatgtcaggacctggaccgatcatgtctggaccgatg
ggcggcatgccgttctccggacccggtcccgctaatgtcttcggtaacatggtgatggga
gtggcaacaacgatgcagcttgccatgggagggatggggatgacagggcagcccatgcag
ggacgtccccccatgcagccgatgccgggaccgtcccacatgagcatgggacccatgccg
gggatccccgtccatcatccacccatgggattcgggatggcaccaccaccagcaccaggt
ccctctctacagccagcaaaactggatgtcaaccaactgttcgagaagctgctaaagaca
gggatcatcaagaaggttgatgagaagaaagaagagccaaaggtggaggagaagacagta
gaagctaagaaggaggagaagactcgggttgttgtgcctcttgaggaaaggatggaggag
gatgagccccgagctgagctgaaactggacaccactgtgcctcctctaacactgagagtg
gaagatctcaaaacgcggcataagggagtgatcaaccgcctgtactgtgggatccagtgt
tcctcctgtggtagcaggttccttcccgaggagacggacaagtacgccaaccatctggac
tggcacttccgcatgaaccgcagggagaaggagggcaccggcaaggcctcgcacagggac
tggtactatggggttgatgactggatagcctatgcagagcttggagatgacgaagaagta
caagaatcagccttctttgagcaacccgttcttcctaccagtgagccaggagaggtgatc
agctgtcctgtctgtacagatgaagaaaatgatgacatctgtgacatctgccaggaaccg
tttgagcagttctgggatgaggatgaggaggcgtggcacctgaaggatgcagtcagggtg
aacggcaagacataccatccaaattgctacgaggattatgacgagagtttcctggagacc
ccaacccctgcagacgcacccaaggaatccccactcgaagcccaaatcaaaatggaaact
aacgcagaggaagcagtgcaggtgaaagaagaacccatggacacagcagaagaagaagag
aagccgtcaacgtcagcaatgcagccactctcaactatcaaagaaatccccttcctgagc
gaggaagctaaagaacagacaaacatcaaagaggaagttagcgagaacatggaagtggga
gaaactgaacaggttaaaacagagacacctgacatagaagtgaaagaagagcctaagtca
ccattaggtaatcagtgtgaggcaatggtaccagcacaagtagataatgttactataaaa
caggaaccagaggaagagaatggtccagctcaacctgataatgataatgaacaaacgact
gatcagatagctgtaaagcaagaggttgttgataacccagtcaagactgaacctcctaca
ccagtgtctgttaaaaaagaagtggaggaagaaaatgtttcaacagctgttaaagaagag
agtgttacagaaaatgtaaaggtagaaagggtatctccaagtcccatggaggtgccactg
gttgaacctaaagtggagcaagttgatgagaataggggacaagctattagcacaattggg
ggtgggacaaagatcccagtggtggggggtgccagccccttgcgggggtcggccatttct
gtagttggaggaggcagcagccctgcaaggtttcggagtaacagcccaatgcggtcaata
ccggtgatcggggcaagtagtagtccaaacaggactggtcagtctacggccaaatcagaa
actgcccagaagcccaaaacggggtcgttctttaagctagatccatctgcaaaaaccaag
taa
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integrated database retrieval system
