Branchiostoma floridae (Florida lancelet): 118419444
Help
Entry
118419444 CDS
T01074
Name
(RefSeq) protocadherin-17-like isoform X1
KO
K16498
protocadherin delta 1
Organism
bfo
Branchiostoma floridae (Florida lancelet)
Pathway
bfo03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
bfo00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
118419444
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
bfo01009
]
118419444
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
bfo04515
]
118419444
Protein phosphatases and associated proteins [BR:
bfo01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
118419444
Cell adhesion molecules [BR:
bfo04515
]
Cadherins
Protocadherins
118419444
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Cadherin_CELSR2_9th
TMEM154
Cadherin_C_2
DNER_C
EphA2_TM
Cadherin_4
DUF1180
Motif
Other DBs
NCBI-GeneID:
118419444
NCBI-ProteinID:
XP_035681706
UniProt:
A0A9J7MWU4
LinkDB
All DBs
Position
7:complement(3563536..3612336)
Genome browser
AA seq
1239 aa
AA seq
DB search
MDLLRTVFLGLLLELIGVSSARGIEFTYLVLEEELAGTHVGNLAQDLMVERASVPRTFQF
LTESPYVAINNKTGELTTKRAIDREQLCPRARVCELKLEVAVLPSQVFQLVQVKISVQDK
NDNTPRFRSTGELSLDLSEATAVDTRVPLDGAVDLDSDKFSIQSYTLQSSSDHMPFTLNT
FTGVDGTLNVELVVNQPLDRERHSFYHLVLTAIDGGNPKLYDSQVLFVNILDTNDNSPLF
DKATYSVDIMENTPVGSLVIDLNATDPDEGTNGEIVYSFGSTVPDSMKKLFALDSVTGKL
TVAAPLDHEASGGPVYQLTVQAQDKGVNSAPTFATVIVNVGDKNDNAPKIRLNFVTTKNG
PVVLSEDVPVETFLAYLTVVDKDGGLNGKVNVTLLGTDGLFGLQLVADNQYLIVTRAPLD
RETKPTFNVTVAARDAGTPSRTTYKSFKVVLTDVNDNPPDFGSGELLFDLTENNAPGVSV
GRVTATDPDEGDNGVVRYSIRDDRPTKRVYVDPVLGTIVVNNAMDREETSLIEVTVVATD
SATPPLEGTAKLKIKILDENDNAPSFYNNRYAFHIAESVEVKTQVGQVIAADRDTGRNAK
LAFAISSGDMFGKFSIDPQNGELYTTGKLDYEQKKKYELVVSVRDNGDPQKDAKCIVNIF
IQDVNDNAPKITFPNTNKNVVYVPITSKPGFLATSIQATDADEGANGELSYSITNGNRRG
IFAISDKGDIRTVKVLKKSWEGLHSLTITVTDHGATPQSASTVINIILDSTVTYNGTQVI
GGGRYGDYIPSNQSAQEWNKAHIPASQDDDRFSIPIIIVIALSAVLVLLVSIVVIVIIKC
RRLNKEDRTYNCRQAETTRSNSTGSLARGQKRNNQRDLVVTINETPVEIDYKVNNRKEDP
DGQESSSPESLADTSPPDSESKLLKKEVPAGEEHDADESGAEHKEGSERGDEESEVSRLL
TRLKGQNTSDDSLNTVLSNHDSGRGDSDREVRANSACGSPVDLRPQSCDGSSMKGETASE
TEPDLPPPPPPTTVLSRCTSECRILGHSDRCWMPVPPNNHIPNPSTTGNSRSSPTHPSNI
VKASKNLSPNHKLHSPENLKILGRVKDLHNEVMNHIANQPRENVSNSRKNHHVTFSDQRP
SPSGHAYTSPSHKNLDNPEENIKYVPYYDDPRFTGHEGPRMSKKPLCLSTFDPHGTIRST
MNSRLSAASSDDSHEPSLYHGRDMVDLLDAVRQSPTSTL
NT seq
3720 nt
NT seq
+upstream
nt +downstream
nt
atggatcttctgaggactgtgtttctggggctccttctggagctgatcggggtgtcgtcc
gcgcgggggatcgagttcacgtatctggtactggaggaggaactagcggggacgcatgtg
gggaacctggcgcaggatctcatggtggagcgcgcctcggtgccgcggactttccaattc
ctgacggagtccccgtacgtcgcgatcaacaacaagacgggcgagctgaccaccaagcgg
gcgatcgaccgcgagcagctgtgtccgcgggcgcgggtgtgcgagctgaagctggaggtg
gccgtgctcccctcgcaggtgttccagctcgtacaggtgaagatctccgtgcaggacaag
aacgacaacacgccgaggttccgcagcaccggcgagctgtctttggacttgtcggaggcg
acggcggtggacacgcgcgtgcccttagacggcgccgtcgacctggactccgacaagttc
tccatccagtcgtacacgctccagtcttcctcggaccacatgcccttcaccctgaacacg
ttcaccggggtggacggcacgctgaacgtggagctcgtggtcaaccagccgctcgatcgg
gagaggcactccttctaccacctcgttctcacggcgatcgacggcgggaaccccaagctg
tatgacagccaggttctcttcgtgaacattctggacaccaacgacaacagcccgctcttt
gacaaggccacgtactcggtcgacatcatggagaacacgcccgtgggctcgctcgtgatc
gacctcaacgccacggatcccgacgaaggcacgaacggtgagattgtctattctttcggt
agcaccgtgccggactctatgaagaagttattcgcgctggactctgtcacgggaaagttg
accgtggcggcgcctttagatcacgaagcgtccggagggccagtgtaccagctcacggtc
caggcgcaagacaagggtgtcaactctgcgccaacatttgctaccgtcattgttaacgtg
ggggataagaacgacaacgcccctaaaattcgtctgaacttcgtgaccaccaagaacggg
cctgtggtgttgtcagaggacgttcccgttgaaacgttcctcgcgtatctgactgtagta
gacaaagacggcgggttgaacggcaaagtgaacgtcacattactcggtacggacgggctc
tttgggttacagctcgtcgccgacaaccagtacctgatcgtgacgagggcgccgctggac
agagagacaaagccgacgtttaacgtcacggtggcggcgcgtgacgctggcacgccgtcg
cgcaccacgtacaagtccttcaaggtcgtcctgaccgacgtgaacgacaacccgcccgac
ttcggctcgggggaactcctcttcgacctgacggaaaacaacgcgccgggcgtgtcggtg
gggagggtgaccgccaccgacccggacgagggagacaacggtgtggtccggtactccatc
cgcgacgaccgccccaccaagcgcgtctacgtcgaccccgtgttgggaacaatcgtggtc
aacaacgccatggatcgggaggagacatccctgatcgaggtgacggttgttgctactgac
agcgcaaccccgcctttagagggcaccgccaaactgaagattaaaatcctggacgaaaac
gacaacgcaccgtccttctataacaacaggtacgcgttccacatcgccgagtcggtggag
gtgaagacgcaggtgggacaggtgatcgccgccgacagggacacaggtaggaacgctaaa
cttgccttcgccatttcctccggggacatgtttgggaaattttccatcgatccgcaaaac
ggggagctgtacaccacgggaaaactggactacgagcagaagaagaagtacgagttagtg
gtgagcgttcgcgacaacggcgacccacaaaaggacgcgaaatgcatcgttaacatcttc
atacaagacgtgaatgacaatgctcctaagatcacctttcccaacacgaacaaaaacgtg
gtgtacgtcccgataacgtccaagcctggatttttagctacaagtattcaagccacagac
gcagacgagggagcgaatggggaactgtcctactccatcaccaatggaaataggagggga
atctttgctatttctgataaaggggacatcaggactgtgaaagtgctgaagaagagctgg
gaggggctgcacagcctgaccatcactgtgaccgatcacggcgcgacgcctcagtccgcg
tccaccgtcatcaacatcatcctggacagtaccgtcacttacaacggcacgcaggtgatc
ggaggcggtcgctatggcgactacatccccagcaaccaatcggcacaggagtggaacaag
gctcacatcccggcgagccaggatgatgatcgcttcagcatccccatcatcatcgtgatc
gcgctgagcgcagtcctggtcctcctggtctccatcgtggtgatcgtcatcatcaagtgc
cggaggctgaacaaggaggaccggacgtacaactgtcgccaggcggagaccacgcgtagc
aacagcacgggcagcctcgcccgcgggcagaagaggaacaaccagcgcgacctggtggtc
accatcaacgaaactcccgtggagatcgactacaaggtcaacaaccggaaggaggatccc
gacggacaggagagctcgagtcccgagtcgctcgccgacacgtccccgccggactcagag
tcgaagctcctgaagaaggaggtacccgcgggagaagaacacgatgcagacgaatccgga
gcagagcacaaggaggggtcggagaggggagacgaagaatcagaggtctcccgactttta
acgagactgaaaggtcaaaacacatcagacgacagcctgaacacggtactcagtaaccat
gacagcgggcgtggcgatagcgacagggaggttcgtgcaaacagcgcctgcggttcacca
gttgaccttcgaccccaaagctgcgacgggagttccatgaaaggagaaaccgcaagcgag
accgaaccagacctgccgccgccgccgccccctactaccgtcctgtcccggtgcacctcg
gagtgtcgcatccttggacattccgaccgatgctggatgccggttcccccaaacaaccat
atccccaatccaagcactactggaaacagccgttcttcccctactcacccgagtaacatc
gtcaaggcctcgaaaaacctctcccccaaccacaaactccacagccccgaaaacctgaaa
atcctgggtcgtgttaaggacctgcacaacgaagtgatgaaccacatcgcgaatcaaccg
cgagaaaacgtgtcaaacagcaggaagaaccaccacgtgactttctcggaccagaggccg
tcgccctccgggcacgcgtacacgtccccgagtcacaaaaacctggacaaccccgaggaa
aacataaaatatgttccttactacgacgacccaagatttacaggccacgaggggccgaga
atgagcaagaagccgctgtgcttgagcacgtttgatccgcacggcaccataaggagtacc
atgaacagtcggctgagtgcagcgagttcagacgacagccacgaaccgagtttgtaccat
ggtcgagacatggtggatttattggacgctgtacggcaaagtccgacgagcacgctatag
DBGET
integrated database retrieval system
