Branchiostoma floridae (Florida lancelet): 118419491
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Entry
118419491 CDS
T01074
Name
(RefSeq) protocadherin-7-like
KO
K16498
protocadherin delta 1
Organism
bfo
Branchiostoma floridae (Florida lancelet)
Pathway
bfo03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
bfo00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
118419491
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
bfo01009
]
118419491
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
bfo04515
]
118419491
Protein phosphatases and associated proteins [BR:
bfo01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
118419491
Cell adhesion molecules [BR:
bfo04515
]
Cadherins
Protocadherins
118419491
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Cadherin_CELSR2_9th
TMEM154
Cadherin_4
Cadherin_C_2
PalH
Ig_VWA7
EphA2_TM
DUF5527
Fibulin_C
PRIMA1
DUF1180
Motif
Other DBs
NCBI-GeneID:
118419491
NCBI-ProteinID:
XP_035681789
UniProt:
A0A9J7LFA0
LinkDB
All DBs
Position
7:3054917..3132521
Genome browser
AA seq
1310 aa
AA seq
DB search
MAQVRTLSMRFLLLSVLTVCNVCGTEVRYSVLEEEPPNTYIGNLARDLGVVGAATPRTFA
ILSNSSQSRVTVDEVTGVLSTDGRIDRDVLCPRAQVCEVGLEVAMLPKQFFQLIQVRITV
EDQNDNTPRFRSSVVTLDLSEATAVNTRVPLDSATDLDSERFSVQTYTLQTSADHAPFDI
NIFDGVDGSKNVELVVAQALDREARSFYRLVLTAFDGGNPRRYDSQVLNVNILDTNDNSP
VFEEESYSVSIMENSPVGTLVLDLNATDPDEGTNGEVVYSFSNSMSDSLLSLFALDPITG
RITINAPLDRESAAGKVYQLTVQARDRGVNSAPTFATVLINVGDTNDNAPLVTLNFVTSS
EGPVYLSEDVPVETFLAYLTVSDRDGGRNGRVNVTLDGANKHFKLQSVPQGDGQFLIVTS
SKLDRETLPTYNVTVIAKDAGKPPKVSYKSFDIILMDVNDNSPDFGTDRLEFELAEEGEA
GTYVGTATATDPDQGANGEVVYSTSDGDQTVYVDPENGNIIVNEVIDRETREFIQFTMVA
RDGGVPSRMGSVLVTIRITDKNDNAPAFTESTYPFYITESVAVGTSVGTVVSTDADIGRN
AKRRYRIIQGNEEGKFSINPENGVIYTADQLDYEQVRQYELIVEVRDSGVPQMSDTCLVR
VFVQDENDNRPEITFPNNRKNVVYVPLTAPVGYLATSIQAVDWDEGPNGELSYSITNGNR
LGIFVISELGDIRTVKLIKPDWAGLYTLTVMVTDHGATPSSATTLLNIFLSDAVYNGSTM
IGGDLLPANVTDWNRFNIANTRQKDDGFSIPIIIVIALSCALVLLVSIVVVVILKCRRRN
KEERTYNNAEKQPVPQQRNSTNRGSGRKRNTSHREIVVTVNEAAHKMDYNDIIKEEPDGQ
ESSSPGSLTETSPPDSESKLLKKDPPKVKNLAKKEQPVRAESETDESGSGPERKERQEAG
SSEDEEARLLRMLKDGHTSDESLNSTHSNHDSGRGSVHSNHDSGRGDSDKEVRSSPTADL
RPQSCEGASNKTELPVETGMPPPPCNVLSRCTQECRILGHSDRCWMPVPPNNHIPNINGS
NNNSPSHHSRLNSPVRNSPEKAKILKIKDFNNPSTGNGRKVTFVDQRPDSPVSYDGSHHS
SPTNSNKGLNLKNSPSHVASASYRNSPTKTGKSLYEDTNRNAAYGSPNRNTFVDNNVTHR
TPYEDSNKNPYSPHKADPRFTGYEAVKPNRKPLCLRTFDPNREFKGTTTLGDSSTSSEEG
NELYNMEDVSEVLDNVEGTPPDSPYGDSSPYKPKELARELDELTFSSFRV
NT seq
3933 nt
NT seq
+upstream
nt +downstream
nt
atggcccaggtacggacgttaagtatgcggtttctcctgctgagcgttctcacggtttgt
aacgtctgcgggaccgaggtgagatactcggtgctggaagaagagccgccgaacacttat
atcgggaacctggcgcgggacttgggagtggtgggcgccgcgacgcctcggacgttcgcg
atcctgtcgaactcgtcccagtcgcgggtgacggtggacgaggtgaccggggtgctgtcc
acggatgggcggatagatcgggacgtgctgtgcccgcgggcgcaggtctgtgaggtcggg
cttgaagtggccatgctgcccaaacagttcttccagctgatccaggtgcggatcacagtg
gaagaccagaacgacaacacccctcggttccgcagcagcgtggtcaccctggacctctcg
gaggcgaccgcggtcaacacccgcgtgccgctcgatagcgccacggacctggactccgag
cggttctcggtccagacctatactttacagacctcggccgaccacgcgccgttcgacatc
aacatcttcgacggcgtggacgggagtaagaacgtggagctggtggtggcgcaggcgcta
gaccgggaggcgcgctccttctaccgcctcgtcctcaccgccttcgacggcggcaaccct
cggcgctatgacagccaggttctgaacgtcaacatcttggacacgaacgacaacagcccc
gtgtttgaagaagagagctactccgtgagcataatggaaaacagtccggtcgggacgctc
gtgctggacttgaacgctaccgatccggatgaaggtacgaacggagaagttgtgtactct
ttcagtaactctatgtcggactctctcctctcgctgttcgccttggacccgatcacgggt
aggataacgatcaacgccccgttagatcgtgagtcggcggcgggcaaagtttaccagctc
accgtgcaggctcgagacaggggcgtcaattccgcgcccaccttcgcgacggtccttatc
aatgtcggcgacacaaacgacaacgcgcctctggtgaccttaaacttcgtcacctcgtca
gaaggaccggtgtatctctcggaagacgtgcctgtggagactttcctggcgtatctcact
gtctcagaccgagacggcgggaggaacggacgggtgaacgtgacgctcgacggcgcgaat
aaacacttcaaacttcagtctgtcccgcagggcgacggacagtttttgatcgtcacgtcg
tccaaactggacagagagacgttaccgacgtacaacgtgaccgtcatagctaaggacgcc
ggaaaaccgccgaaggtgtcctacaaatcatttgacatcatcctcatggatgtgaacgac
aactcccccgactttgggacggatcggctggagtttgagctagcggaagaaggcgaggct
ggaacgtacgtcggcacagccaccgccaccgacccggaccagggcgcgaacggcgaggtc
gtctactccacctccgacggcgaccagaccgtctacgtggacccggaaaacggcaacatc
attgtcaacgaggttatcgaccgggagacgcgcgagtttatccagttcaccatggtggcg
cgagacgggggtgttccctcccgcatggggtccgtcctggtcaccatcaggattaccgac
aagaacgacaacgctcccgccttcacggagagcacctacccgttctacatcaccgaatcc
gtcgcggtggggacttcagtagggactgtggtgtccacagacgcagacatcggcaggaac
gccaagcggaggtacagaatcatacagggaaacgaggagggaaagttctccatcaatccc
gagaacggggtgatctacacagcggaccagttggattacgaacaggtgagacaatacgag
ttgattgttgaagttcgtgacagtggagtcccccaaatgagtgacacatgtcttgtcagg
gtctttgtccaggacgagaacgacaacagacccgaaatcaccttccccaacaacagaaag
aatgttgtgtatgtccccctcactgccccagttggttacctagcaacaagcatccaagca
gtagattgggatgaggggcctaacggggagttgtcatattccatcaccaatggcaaccgt
ttgggcattttcgtcatctccgagctcggggacatcaggacggtcaaactgatcaagcca
gattgggcggggctgtacacccttaccgtcatggtaacggaccacggagccacgccctcc
tctgccaccaccctgctcaacatctttttaagcgacgccgtttataacggctcgaccatg
attggcggggacctgctccctgcaaacgtgacggactggaacaggttcaacatcgccaac
acccgccagaaagacgacggcttcagcatccctattataatcgtgattgcgctgagctgc
gctctcgttctcctggtatccatcgtggtcgtggttatcctcaagtgtcggcgcagaaac
aaagaggaaaggacatacaacaatgccgaaaaacagcctgtaccgcagcagaggaactct
acaaatagaggcagcggtaggaaaagaaacacgtctcacagagaaatcgttgtgacagta
aacgaagcggcacataaaatggactacaatgatatcataaaagaggaacccgacggacag
gagagttccagtccgggttcgctcacggagacttcccctccagactcggagtctaaactc
cttaagaaggaccctcccaaggtgaagaaccttgccaagaaggaacagcccgtaagagcg
gagagtgagacagacgagtcgggatcgggaccggaacggaaggaaagacaggaggcagga
tcttctgaagacgaggaggctcgtctgttaaggatgctcaaggacggacacacctccgac
gagagcctcaactccacccatagcaaccatgacagtgggcgtggctccgtccatagcaac
cacgacagcggccggggagacagcgacaaggaggtccgcagctcacccactgctgacctt
cgaccccaaagttgtgagggggcttcgaacaagacagaactacccgtagagacaggaatg
ccaccacccccttgcaacgtgctgtcccgatgcacccaggagtgtcgtattctcggccac
tcggaccgatgttggatgccggtccctcccaacaaccacatccccaacatcaacggcagc
aacaacaactctccatcccaccacagccgcctcaactcacccgtacggaacagcccagag
aaagccaagatcctgaagatcaaagatttcaacaacccttccacggggaacggcaggaag
gtcactttcgtcgatcaaaggccggattctcccgtgagctatgacggctcacatcactcc
tcgccgaccaatagcaacaaggggttgaacttgaaaaactccccgagtcacgtggcatcg
gcgagctatcggaattcccccacgaaaaccgggaagagcttgtacgaggataccaacagg
aacgctgcctacggcagccccaacaggaacacgtttgtggataacaacgtcacccacaga
actccttacgaagactccaacaaaaatccctacagtccgcacaaggcggaccccagattt
accgggtacgaggccgtgaagcccaacaggaaacctctgtgtttacggaccttcgacccc
aacagagagttcaagggcacgacgaccttgggagacagtagcacgagttccgaggagggg
aacgaactctacaacatggaggatgtgtctgaggtgttagacaatgtggaggggacccca
cctgacagtccatacggggactccagtccgtataaacccaaagaactggcacgggagctc
gacgaactcacgtttagctccttcagagtctag
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