Branchiostoma floridae (Florida lancelet): 118419574
Help
Entry
118419574 CDS
T01074
Name
(RefSeq) LOW QUALITY PROTEIN: vacuolar protein sorting-associated protein 18 homolog
KO
K20181
vacuolar protein sorting-associated protein 18
Organism
bfo
Branchiostoma floridae (Florida lancelet)
Pathway
bfo04140
Autophagy - animal
bfo04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
bfo00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
118419574
04148 Efferocytosis
118419574
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
bfo04131
]
118419574
Membrane trafficking [BR:
bfo04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
118419574
Hops complex
118419574
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pep3_Vps18
Clathrin
Vps39_2
zf-RING_5
zf-RING_16
zf-C3HC4_2
zf-RING_11
zf-RING_UBOX
zf-ANAPC11
zf-RING_2
zf-rbx1
DUF2172
DUF1664
Ribosomal_60s
Motif
Other DBs
NCBI-GeneID:
118419574
NCBI-ProteinID:
XP_035681913
UniProt:
A0A9J7LFQ0
LinkDB
All DBs
Position
7:complement(4808085..4820400)
Genome browser
AA seq
984 aa
AA seq
DB search
MANLMDQYESHQYRGSGRTQRQSKDSIPEPISTGFISARLEDEVPIFNKQKIQFKPRDPI
THLKVSNNMLVLAMSSNLLLRIDLENKENTDEVEISHSLDNRPTRLHLDPLGRHLLISMS
NQETLYLSRNSKKPKPLVKLKGYVIESVGWNNYNTSDMSTGPILFGTSRGLIFEGEIVSE
DESKFFAGAADKYFKQVFSLGKENPSPVNSLHFDRMPHNSQSEQKYFIMATTPGRLYQFI
GTIPVTSDPPIFQPIFANYEDSPARFLELPGNFGYSNLQYYHPKGIKSAPEQFAWMTGPG
VYFGSFDLSPQQNQDVTSESKLIAYPSDNNTSQNPLSIVLTEFHILLVFPDCVKAICHLN
EQLIFEDFHRTGTFGKLLGMSKDPIKGSIWSFSDQAVFKYKVVRESRDVWQMYLDRGEYD
LALAYCKDNPANRDKVLTKHAEHFFQEKQYDKSAMLYAQTQNSFEEVALKFIQMDQQKAL
QTFLWKKLNGLKPADKTQTTMLVTWLIELYLNRLGALKEQGLQNDGKYYTLRDEFRKFLA
HQRVKDCLSFNKNTAYDLIASHGNIEDLVFFAMLMHDYERVISHHIQHDDYRAALDVLTN
KQGDTELYYKFSPVLMQYIPKQTVDSWIAKGRKLDPQRLIPALVNYDHSHDSKXVIEAIR
YLEFCVHDLSVQDTAIHNYLLSLYAKLQPEQLIKYLRIQGQNPDSVPYDLKYALRLCAEH
SHKEACVHIYRTMGLFEEAVELALQVDVNLAKVNADLPEDDEELRKKLWLRIARHVVEEE
KDIKKAMEFLHECDLLKIEDVLPFFPDFVTIDHFKDAICMSLQEYNQHIEALKEEMQDAT
ESAKSIRSDIQEMRNKYSVVKAQGKCSSCRYPLLTRGFYLFPCQHVFHSDCLVTEVTPNM
ASARRNKVDNLLRDINSAPATPQAAAATDASAATTAMSKGEQQKSELDDMIASECPYCGE
MMIMSIDKPFIEPKEFDEVVQSWQ
NT seq
2955 nt
NT seq
+upstream
nt +downstream
nt
atggccaacttaatggaccagtacgagtcgcaccagtaccgtgggagcggccgcacgcag
cgccagtccaaggactccatcccggagccgatctccacgggattcatcagcgcccggctc
gaggacgaggtcccgatcttcaacaagcagaagatccagttcaagcctcgtgaccccatc
acacacctaaaggtgagtaacaacatgctggtgctggccatgtccagtaatcttctcctg
cggatcgaccttgagaacaaggagaacacggacgaggtggagatcagccactcgctggac
aaccgtccgacccgcctgcacctggacccgctcgggcgccacctcctcatctccatgtcc
aaccaggagactctgtatctctcgcggaactccaagaagccgaaacctctcgtcaagctt
aaggggtacgtgatcgagagcgtggggtggaacaactacaacaccagcgatatgtcgacg
ggtccgatactgttcggtacatcccgcggtttgatatttgagggagagattgtgtcggag
gacgagagcaagttcttcgcgggagcggcggataagtacttcaagcaggtgttcagtctg
ggaaaggagaacccgtctccggtcaacagcctccacttcgaccgcatgccgcacaactcg
cagtcggagcagaagtactttatcatggcgaccacgcccgggcgcctctaccagttcatc
gggaccattcccgtcaccagcgacccgccgattttccagcccatctttgcgaattacgag
gacagtcccgcaaggtttttagagctgcctggtaattttgggtacagtaatctccagtat
taccatcccaagggcatcaagtctgcgcccgagcagtttgcatggatgaccggcccggga
gtttacttcggcagcttcgacctcagcccgcaacagaaccaagacgtcacctcggagagc
aagctcatcgcatatccctcagacaataacacctcccagaatcctctctccatcgtattg
acagaatttcacatcttgctggtgttcccggactgcgtaaaagccatctgccacctgaac
gaacagctcatcttcgaagacttccaccggacggggacgtttggcaaactccttgggatg
agcaaggatccgatcaaagggtcgatctggtcgttctcagaccaggccgtgttcaagtac
aaggttgttcgcgagtcgcgggatgtctggcagatgtacctggaccgaggggagtacgat
ctagcgctggcgtactgcaaggacaatccggccaacagggacaaagtgctgaccaagcat
gccgaacacttcttccaggagaagcagtatgataagagcgccatgctgtacgcacagact
cagaactcgttcgaggaggtggctctgaagttcatccagatggaccagcagaaagcccta
cagacgtttctgtggaagaaactaaacgggctgaagccagcggataagacccagacgacc
atgctggtgacctggctgatcgagctgtacctgaacagactgggcgcgctgaaggaacag
gggctgcagaacgacggcaaatactacacactgagggacgagttcaggaagtttctggct
caccaaagagtgaaggactgtttgagcttcaacaagaacacggcgtacgacctgatcgcc
agccacgggaacatcgaggacctggtgttcttcgccatgctgatgcacgactacgagcgc
gtgatcagccaccacatccagcacgatgactacagggccgcactggacgtgctcaccaac
aaacagggcgacacagaactgtactacaagttctccccagtcctgatgcagtacatcccc
aagcagaccgtggactcctggattgccaaggggaggaagctagacccacaacgtctcatc
cccgctctcgtcaactacgatcactcccacgattcaaagtaagtgattgaagcgatccgg
tacctggagttctgtgttcatgacctgagcgtacaggacacagccatccacaactaccta
ctgtctctgtacgccaaactacagcctgaacaactcatcaaatatctcaggatacagggc
cagaatcccgatagcgtgccgtatgacctgaagtacgccctgcgcctctgtgcggagcac
agccacaaggaggcgtgtgtgcacatctaccgcaccatggggctgtttgaggaggctgtg
gaactggcactgcaggttgatgtgaacctggccaaggtgaacgctgacctgcctgaggat
gatgaggagctgaggaagaagctgtggctgcgcatcgcccggcatgtggtggaggaggag
aaggatatcaagaaagccatggagttcctgcacgagtgtgacctgctgaagatcgaggat
gtgctgccgttcttcccggacttcgtcaccatcgaccacttcaaggatgccatctgtatg
tccctacaggagtataaccagcacatagaggcactcaaggaagagatgcaggacgccacg
gagagcgccaagtcgatccgctcggacatccaggagatgaggaacaagtacagcgtggtg
aaggcgcaggggaagtgctcgtcctgtcgctaccccctcctcacgcgggggttctacctg
ttcccctgccaacacgtgttccattccgactgcctggtcaccgaggtcacgcccaacatg
gcctccgccaggagaaacaaagtggacaacctgctgagagatatcaactcagcacccgcc
actccacaggcagcagctgccacagatgcatccgcagccacgacggcgatgtcaaagggc
gagcagcagaaaagcgagctggacgacatgatagcgtcagagtgcccgtactgcggggag
atgatgatcatgtctatcgacaaaccctttatcgaacctaaagagtttgatgaagttgta
cagagctggcagtag
DBGET
integrated database retrieval system
