Branchiostoma floridae (Florida lancelet): 118419811
Help
Entry
118419811 CDS
T01074
Name
(RefSeq) pre-mRNA-processing factor 40 homolog B-like isoform X1
KO
K12821
pre-mRNA-processing factor 40
Organism
bfo
Branchiostoma floridae (Florida lancelet)
Pathway
bfo03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bfo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
118419811
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
bfo03041
]
118419811
Spliceosome [BR:
bfo03041
]
Complex A
U1 snRNP components
U1 related factors
118419811
Complex B
118419811
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FF
WW
WW_TCERG1
Glyco_hyd_101C
DUF4936
Motif
Other DBs
NCBI-GeneID:
118419811
NCBI-ProteinID:
XP_035682300
UniProt:
A0A9J7LH26
LinkDB
All DBs
Position
7:complement(12647011..12659190)
Genome browser
AA seq
970 aa
AA seq
DB search
MNKPPGGPQPGQPPPFPGGGPPPMMMPPFAVRPTSIMIGSYDVALLSRLKMPPGMAPPPG
FLPPPGMGQMPPRTVPPPGMSQPPPGMSVPPPGMTMPPFGHPPPMPGMPMMPPPGMTMPP
MGMPGTQAQAPGTTAAPAVTAMASGAPGATTQADPAGTKVSGFVSGSDQPMQSATAVNPQ
VASVQQEGMAGSPGMASPAQTSEKPKDEKSPWTEHKAPDGRTYFYNSKTKQSTWEKPAEL
KSHAELLLDSCPWKEFKADSGKVYYYNSQTKESRWTIPKELEELRAMIAAQGLDKLKTAG
GDSGSSSPSVTTPGQVQPQGTPGQMGTPGQVLTPGQGVTTPGQVITAGQQDMTSQPAAAV
GAPAVDTAAVATQQAAEGTPSEADTDDKSQAGEDATDSAPEKKEYVYANKAEAVAAFKAL
LKEKGVASNATWEQAMKMIVNDPRYGALKKLNEKKQAFNAYKTQRAKEEKEEERQRAKEA
KEKLQEFLEGHERMTSTTKYRKAESMFCDLQVWQAVPERDRKDLYEDVLFFLAKKEKEDA
KVLRKRNIAALKNILDNMANITYKTTWSEAQQHLLDNPTFAEDDELQNMDKEDALICFEE
HIRALEKEEEEEKERQRGRERRQQRKNREGFLVLLDELHEAGQLHSMSTWMELYSIISAD
VRFTNMLGQPGSTPLDLFKFYVEDLKARFHDEKKIIKDILKDKDFAVEVNSSFEDFATAI
SSDKRAATLDTGNIKLSYNSLIEKAEAREKERQKEEARKQRRKEAAFKNMLKQATPPLDP
TSTWDDVRDRFVNDAAFDQILVESERARLFKEFIQALETECSHHHSKSSSKKHSKKAKKH
RSKRSRSHSASESEEEERSHRRSSKKKKRSRSRSRSESTDRSDSEESRSRSRKHKKKSKK
RRHRSRSSDSEQETRKAERKSRDKSESRASPPPSDSKKEKTGWDTSESDLSEGELESRRR
ALLQQLADDQ
NT seq
2913 nt
NT seq
+upstream
nt +downstream
nt
atgaacaagccgcctggcggaccgcagcccggccagcccccgcccttccccggcggcgga
cccccgcccatgatgatgccacccttcgctgtaaggccaactagcatcatgattggttct
tatgatgtggctttactatccagactcaaaatgccgccaggaatggccccccctccaggc
ttcctcccccctcctggcatgggccagatgccccctcgcaccgtcccccctccaggcatg
tcccagccccctccggggatgagcgtcccccctccgggcatgaccatgccccccttcggc
cacccccctcccatgccgggtatgcccatgatgcccccaccaggaatgaccatgcccccc
atgggaatgccggggactcaggcacaagcaccaggcactacagctgccccagctgtcaca
gcgatggcatctggagctccaggtgcgaccacacaggccgatccagctggcaccaaggtg
tcagggtttgtctccgggtcagaccagcccatgcagagtgcgacagctgtcaatccacag
gtggcgtcagtacagcaggagggcatggccgggtcacctgggatggcctcacctgcacag
acgtcagagaagcccaaagatgagaagagcccgtggacggaacacaaggcgcctgacgga
aggacgtacttctacaactctaagaccaaacagtcgacgtgggagaaacccgcggagctg
aagagtcatgccgagctgctgctggactcctgtccatggaaggagtttaaggcagacagt
ggcaaggtttactactacaactcccaaaccaaagaatcacgctggaccatccccaaagag
ctggaggagctccgcgccatgatcgctgcacaggggctggacaagctgaagaccgcagga
ggggattctgggagcagcagtccctcggtgaccacacccggacaggtgcagccgcaggga
acacctgggcagatgggcacacctggacaggtgctgacacctggacaaggtgtgaccaca
cctgggcaagtcataacagctggtcagcaggacatgacgagccagcctgcagctgcggtg
ggggcacctgctgtagatacagctgcagtcgctacacagcaggccgcagagggaactcca
tcagaagcagacacagacgacaagtctcaggctggtgaggacgccacagacagcgctcct
gagaagaaggagtacgtctacgctaacaaggccgaggctgtggctgccttcaaggcactg
ctgaaggagaagggagttgcgtccaacgccacgtgggaacaggccatgaagatgattgtt
aacgaccctcgctacggggccctcaagaagctgaacgagaagaagcaggccttcaacgcc
tacaagacacagagagctaaggaggagaaggaggaggagcggcagagggccaaggaggcg
aaggagaagctgcaagagttcctggagggtcacgagaggatgacctcaactaccaagtac
aggaaggcagagagcatgttctgtgacctacaggtctggcaagcagttcctgagagagat
cgcaaggatctgtacgaggacgtcctcttcttcctggcaaagaaggagaaggaggatgcc
aaggtcctgcgcaaacggaacatcgcagccctgaagaacatcctggacaacatggccaac
atcacctacaagaccacgtggtccgaggcacagcagcacctcctggataaccccaccttc
gctgaggacgacgagctacagaacatggacaaggaggacgctctcatctgctttgaggag
cacatcagagccctggagaaggaggaggaagaggagaaggaacgtcagcgcgggcgggag
agacgacagcagcggaagaaccgggagggtttcctggtgctgctggacgagctgcacgag
gcgggacagctccactccatgtccacctggatggagctgtactccatcatcagtgctgac
gtcaggttcaccaacatgttagggcagccagggtcaacacccctggatcttttcaagttc
tacgtggaagacctcaaggctcgtttccacgacgagaagaaaattatcaaggacattctc
aaggacaaagactttgctgtggaggtcaactcaagtttcgaagactttgcgactgcgata
agttctgacaaacgtgcggccactctggacacaggaaacataaaactgtcttacaacagc
ctgattgagaaggcagaggctagggaaaaggagagacagaaggaggaagccaggaaacaa
cgaaggaaggaagcagcatttaagaacatgctgaagcaggccacaccacctctggatcct
acctcaacttgggatgatgttagggacaggtttgtaaacgacgcagcctttgaccaaatc
ctggtggagtccgagagagccagactcttcaaggagttcatccaggccttggagacagag
tgcagtcaccaccactccaagtcatcctccaagaaacattccaagaaggccaagaaacac
cgcagcaagaggtcaaggtcgcactctgcatcagagtccgaggaagaggagaggtcacac
agaaggtcgtcaaagaagaagaaaaggtcacgatcaagatcaagatccgagtccacagat
aggtcagactcagaggagagccgcagtagatccaggaagcacaagaagaaatcgaagaag
cggcgccaccggtcacgctcctccgactcggagcaggagaccagaaaggcggagaggaag
tcgcgagacaagtcggagtcccgagcgagccctcccccgtcggattccaagaaggagaag
actggatgggatacatcagagagcgacctcagtgaaggggagctagagagccgcagacga
gcccttcttcaacagctagcagatgaccagtag
DBGET
integrated database retrieval system
