Branchiostoma floridae (Florida lancelet): 118420439
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Entry
118420439 CDS
T01074
Name
(RefSeq) pre-mRNA-splicing factor SYF1-like
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
bfo
Branchiostoma floridae (Florida lancelet)
Pathway
bfo03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bfo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
118420439
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bfo03019
]
118420439
03041 Spliceosome [BR:
bfo03041
]
118420439
Messenger RNA biogenesis [BR:
bfo03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
118420439
Spliceosome [BR:
bfo03041
]
Complex B
Other components
Prp19-related factors
118420439
Complex C
118420439
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
TPR_14
HAT_PRP39_C
Suf
TPR_2
TPR_12
TPR_8
TPR_15
ARM_TT21_C
ARM_TT21
TPR_1
PPR
RPN7
PPR_2
TPR_7
TPR_10
DALR_1
Motif
Other DBs
NCBI-GeneID:
118420439
NCBI-ProteinID:
XP_035683128
UniProt:
A0A9J7LI11
LinkDB
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Position
8:complement(2399301..2427030)
Genome browser
AA seq
861 aa
AA seq
DB search
MILVNMPVEENKDLLLEETDLAYEEDILRNPFAVKCWLRYVEHKTTTNAPGKAINLVYER
ALRELPGSYKLWYNYLKRRRKQVRGRCITDPAYEDVNNAFERALVFMHKMPRIWLDYCVF
LMDQKKITRTRRTFDRALRALPITQHHRIWPMYLNFIKTYPLHETAVRVYRRYLKLAPEN
TEDYIDYLISIDRLDEAATRLADLVNKEDFVSKRGKSNHQLWHDLCDLISKNPDKIRSLN
VDAIIRGGLHRFTDQLGMLWNSLADYYIRSGHFEKARDVYEEAIQTVVTVRDFAQVFDAY
SEFESTIVNNKLEMDEDGKLSEEDQDDLDLRMARFEDLISERRPLLLNSVLLRQNPHNVN
EWHKRAKLFSEKEKAREVIQTYTEAVQTVDPQKATGKLYTLWVAFAKYYEENSQVDDART
IFEKSTKVPFKHVDDLASVWCEYAEMEIRHENFDAALELMKRATAMPGRKAAYFDETETV
QNRLYKSLKLWSMYADLEESFGTFKSCKAVYDRIVDLRIANPQIIINYGMFLEEHDYFEE
GFKAYERGIALFRWPNVYDIWNMYLTKFIDRYGGKKLERARDLFEQCLEDCPPKYAKNFY
LLYAKLEEEHGLQRHAMAVYDRSTKAVQPDEQYEMFNIYIKRAAEIFGVTYTRQIYEKAI
EMLPEEHAREMCLRFADLEKKLGEIDRARAVYAHCSQMCDPRTTASFWQTWKDFEVRHGN
EDTIREMLRIKRSVQATYNTQVNFMSAQMLAAAGSATGTVADLGPGQMDDMKLLEQRAQQ
LTTEHEKDMPKPKSQLLFVRGGSTQEDLSDAVKANNPDEITLDSEEEGTDSEAEVEEVQL
ERRSVPTEVFGGLAKEDGEHD
NT seq
2586 nt
NT seq
+upstream
nt +downstream
nt
atgatacttgtcaacatgccggtggaagagaataaggacctgctcctggaagagacagac
cttgcatacgaagaagatatcttgcgcaatcccttcgccgtgaagtgctggctgcgttac
gtggagcacaaaactaccaccaatgcacctggcaaggctatcaacctggtgtatgaacgg
gccttgagggaactgcctggcagctacaagctgtggtacaactacctgaagaggagaagg
aagcaggtgcgaggcaggtgtatcacagacccagcgtatgaagatgtcaacaatgccttt
gagagagcccttgtcttcatgcataagatgccgcgtatctggctggactactgtgtgttc
ctgatggaccagaagaagatcacccgtacgcgccgcacgtttgaccgcgcgctgcgagcg
ctccccatcacccagcaccatcgcatctggcccatgtacctcaacttcattaaaacttac
ccgctacacgagacggcggttagagtctacaggcgctacctcaagctggccccagaaaac
acagaggactacatcgactacctgatctccatagacagactggacgaagcagccacgcgt
ctggctgacctggtcaacaaggaagactttgtgtccaagaggggcaagtcaaaccaccag
ctgtggcacgatctgtgcgatctcatctccaagaatccggacaaaatccgctccctgaac
gtggacgccattattcgcggcgggctccatcgctttacggaccagctgggcatgctctgg
aactctctggcagattactacatccgcagtggccactttgagaaggccagagatgtgtat
gaagaagccatccagactgtggtgactgtgagagactttgcccaggtgttcgatgcctac
agtgagtttgagtccaccattgtcaacaacaaactggagatggacgaggacgggaaactg
tcagaggaagaccaagatgaccttgacctgcggatggctcggtttgaggacctgatctcc
gagcggcgccccctgctgctgaacagtgtactgctgagacagaacccacacaacgtcaac
gagtggcacaaacgagccaaactcttctccgaaaaggagaaagccagagaggttatccaa
acctacacagaggcagttcagacagtggacccccagaaggccacaggaaagctgtacacc
ctgtgggtcgccttcgccaagtactacgaggaaaacagccaggttgatgatgccagaaca
atatttgagaagtccaccaaggtgccattcaaacatgtggatgacttggccagtgtgtgg
tgtgaatacgctgagatggaaatcagacatgaaaactttgatgctgccctggagttgatg
aagagagccaccgccatgccaggcaggaaggccgcgtactttgacgagacagaaacggta
cagaaccgtctgtacaagtcgctcaagctgtggtccatgtacgccgacctggaggagagt
ttcggcacgttcaagtcctgcaaggctgtctacgatcgcatcgtcgacctcaggatcgcc
aatcctcagatcatcatcaactacggcatgtttctggaggaacacgactactttgaggaa
ggtttcaaggcctatgagagaggtattgccctgttcaggtggcctaacgtgtatgacatc
tggaacatgtatctcaccaagtttattgaccggtacggtgggaagaagctggagcgagcc
agggatctgttcgaacagtgtctggaagactgtcctcccaaatatgccaaaaatttctac
ctgctgtacgccaaacttgaggaggaacacggtctacagcgacacgccatggcggtgtac
gaccgctccaccaaggccgtccagcccgacgaacagtacgagatgttcaacatctacatc
aagagggctgcggagatcttcggtgtgacctacaccagacagatctatgagaaggctata
gagatgctaccagaggaacatgccagggagatgtgtctaagatttgcagatctggagaag
aagcttggagagatagaccgagccagagcagtgtacgctcactgttcacagatgtgtgat
ccaaggacaacagcgtccttctggcagacgtggaaggactttgaggtccgtcacgggaac
gaggacacgattcgtgagatgctgcgtatcaagcgcagcgtgcaggccacgtacaacacc
caggtcaacttcatgtctgcccagatgctggccgctgccgggagtgccacagggacagtg
gctgaccttgggcccgggcagatggacgacatgaagctgctggaacagcgtgcacaacag
ctgaccacggaacacgagaaggacatgcccaaacctaagtcacagctcctgtttgtcagg
ggaggcagtacccaggaggacctgagtgatgcagtaaaagctaacaaccctgatgagatc
accctggactctgaagaggaggggacggacagcgaggcagaggtggaagaagtccagttg
gaacggaggagtgtgcctaccgaggtgttcggagggctggccaaggaagatggggagcat
gactaa
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