Branchiostoma floridae (Florida lancelet): 118420743
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Entry
118420743 CDS
T01074
Name
(RefSeq) spliceosome RNA helicase DDX39B
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
bfo
Branchiostoma floridae (Florida lancelet)
Pathway
bfo03013
Nucleocytoplasmic transport
bfo03015
mRNA surveillance pathway
bfo03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bfo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
118420743
09122 Translation
03013 Nucleocytoplasmic transport
118420743
03015 mRNA surveillance pathway
118420743
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bfo03019
]
118420743
03041 Spliceosome [BR:
bfo03041
]
118420743
Enzymes [BR:
bfo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
118420743
Messenger RNA biogenesis [BR:
bfo03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
118420743
Spliceosome [BR:
bfo03041
]
Complex C
Other components
EJC/TREX
118420743
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
118420743
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
AAA_19
Motif
Other DBs
NCBI-GeneID:
118420743
NCBI-ProteinID:
XP_035683595
UniProt:
Q8T783
LinkDB
All DBs
Position
8:19591018..19603863
Genome browser
AA seq
427 aa
AA seq
DB search
MAEEGENELLDYEEEEQETTTEAAGDTAVQKKEVKGSYVSIHSSGFRDFLLKPELLRAIV
DCGFEHPSEVQHECIPQAILSMDVLCQAKSGMGKTAVFVLATLQQIEPVDGQVAVLVMCH
TRELAFQISKEYERFSKYMPTIKNAVFFGGMPIQKDRNTLKTNCPHIVVATPGRLLALAR
DKSLNLKHVKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCKK
FMQDPMEVYVDDETKLTLHGLQQHYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCI
ALAQLLVEQNFPAIAIHRAMGQEERLKRYNQFKNFERRILVATNLFGRGMDIERVNIVFN
YDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKVLNEVQDRFEVNVSELPDEIDIS
SYIEANR
NT seq
1284 nt
NT seq
+upstream
nt +downstream
nt
atggcggaagaaggtgagaatgaactgttggactacgaggaggaggaacaggagaccacc
accgaggcggccggagacaccgcagtgcagaagaaagaagtgaagggttcttacgtctcc
atccacagctccggtttcagggatttcctgctgaaacccgagctcctccgcgccatcgtt
gactgcggttttgagcatccttcagaggttcagcacgaatgcattccccaggcgattctg
tctatggatgtcctctgccaggccaagtctggtatgggcaagactgccgtctttgtcctc
gccacgctgcagcagattgaaccagttgacggccaggttgctgtgttggtgatgtgccac
accagggagctggccttccagattagcaaggagtacgaacgcttcagcaagtacatgcca
accatcaagaatgcggtgttcttcggtggcatgccaatccagaaggaccgcaacactctg
aagaccaactgtcctcacatcgtggtggcgacgcctgggcggctcctggccctggcgcgg
gacaagtcgcttaacctgaagcacgtcaagcacttcatcctggacgagtgtgacaagatg
ctcgaacaactagacatgcgccgagatgtccaggagatcttccgcatgactcctcacgag
aagcaggtcatgatgttcagcgccaccctcagcaaggagatccgccccgtctgcaagaag
ttcatgcaagatcccatggaggtttatgtggacgacgagacaaagctgacgctgcacggt
ctccagcagcactacgtcaagctcaaggacaacgagaagaaccgcaagctgttcgacctg
ctcgacgtcctcgagttcaaccaggtggtgatattcgtgaagtccgtgcagcgttgcatc
gcactcgcccagctgttggtggagcagaacttccccgctatcgccatccacagggccatg
ggccaggaggagaggctgaaacgatacaaccagttcaagaactttgagcgtcgaatcctc
gtggcgaccaacttgttcgggcgcggcatggatatcgaacgagttaacatcgtcttcaac
tatgacatgcccgaagattctgacacatacctgcacagagttgcccgtgcaggccgtttc
ggcacgaagggtctggccatcacgtttgtcagcgacgagaatgacgccaaggttctgaac
gaagtccaggaccggttcgaggtgaacgtgtctgagcttcccgatgagatcgacatcagt
tcatacattgaggcaaatcgctga
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