Branchiostoma floridae (Florida lancelet): 118421184
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Entry
118421184 CDS
T01074
Name
(RefSeq) collagen alpha-1(I) chain-like
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
bfo
Branchiostoma floridae (Florida lancelet)
Pathway
bfo04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
bfo00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
118421184
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
bfo00536
]
118421184
Glycosaminoglycan binding proteins [BR:
bfo00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
118421184
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
Laminin_G_2
Laminin_G_3
Motif
Other DBs
NCBI-GeneID:
118421184
NCBI-ProteinID:
XP_035684239
UniProt:
A0A9J7LLB6
LinkDB
All DBs
Position
8:8309071..8383017
Genome browser
AA seq
1669 aa
AA seq
DB search
LLLQLSWLTTSQARPEQDTAFTDGVDVLRGLHLIDSHKTAPEGVIRGDYGVILQNKARIN
TRVSRVFKQGIPSDFAFILVFQSFKNFTTHLFSIKDKQKKTRLAIRIGAKDIQFYYADRK
NFPGRYSPVFNYTANDGRWHFMSFKVSDQEVTMYTSCGEKKDQRNLVRNPFDEIGKEGRI
TLGRLKSKGKRFQGAICQFEMYYDPAVAAQYCDYIRQRCLNSILDLDSVLSLHEGRVHNM
NMHGGSPTEVPDTVAAATPTVLPLSPFHRVKIMPTTTTQESPWYPIFTGQPEEDMEPTSV
STTTTTLPTPGNPTPPSSTAHTGHAALTLSPSSSHKVTSAGGASLPAAVTHSPASLPPSL
PSAYPISPPGEADRSPTVEPPMGATIPSAVGSLDPRPASGGQTSTGEGSSGSPDHQEPKP
STEPPVIFYVEDSEGETLFYIVKGEKGDKGRAGIRGLQGYPGPQGRPGQPGPPGFSGRTG
SPGFSGLKGEKGDPGWIPLVAIPGRKGDKGFPGIPGPPGRKGLKGDQGEDGPMGLPGEKG
PPGQLGQEGLNGFQGRQGKSGPPGPPGPKGETGDPGPLGPPGLRGIDGEKGERGPPGKQG
KVGRSGFPGDPGPRGPPGSDGGPGRAGPSGPIGLPGLPGDKGFPGERGKPGRQGREGVQG
DPGPGGPKGEKGEIGEFGPPGERGFKGDPGTIGDIGPQGPLGKPGGVGVQGDKGEPGDSG
PAGPKGYPGDIGVPGKNGPAGSKGEGGPMGPEGLLGPPGPDHCSQQSSLISFGPLPMGRV
ETVGTKPKLTRASRETLGDLVNLVGREKSVHQVMLVFPGLLGKRETEVQVASLVQQVVKG
KMVMKVLLAHLDYLAHLAQKVRKVSQVYPAEGERSDLRVHKERKVFQDQRANLAKKVLQV
SRGHRDQMGGLGPLGPRGEPGLKGLSGAKGAVGEIGEDGDPGEPGARGAMGTVGDQGLQG
RDGEPGPPGFEGLRGPRGSKGAMGKLGPPGKDGPPGAPGLASEEPGEKGEKGQEGYPGDS
GPVGQQGQRGDPGLKGPSGPVGLPGAIGPPGADGKTSERGRPGRDGPKGLRGNRGARGFP
GFQGDPGPVGPEGQEGGRGSVGDAGNPGDLGPQGEVGLLGHTGKVGVEGVKGSRGNPGEP
GQRGDEGKRGKQGEPGLAGDVIIRGPRGAPGEPGSPGPAGPPGVDGPKGKPGDRGFPGPV
GFIGDTGPVGSPGVPGMPGLDGIRGEDGDQGEQGLMGPPGVRGIRGSTGNVGSRGVIGMP
GAPGKQGPKGEKGDAGAPGLPGTTGFPGFDGFPGTWGPKGDPGKPGTVGVPGTAGQPGRR
GKVGSAGAPGVKGSRGPRGAEGDEGNRGWNGFPGPLGIKGTVGEYGFDGRLGPKGPPGNE
GLKGVKGPSGPDGKPGPEGEKGVKGDRGTPGTHGLRGAPGPPGRPGPPGPTGTFPSLSTS
EEFDAAIKLLLQNTQREFDIEVPQRDQQQMHMDVFETLQYLTSYIESIKNPLGTKENPAR
TCRDLVDCKYKRDDGKYWIDPNLGCSTDAIEVYCNFTSGGQTCVKPATPGRFNFTIGKVQ
MNFLHLLSAEAAQVVTVHCKNSPVWRTPHRSIPGVKFKTWSGPVYHYGGPFQPEVLEDNC
MKEDGKWHKTRLLFTTTDVHHLPISDVVIPEDKRLGLHYRIEISPVCFI
NT seq
5010 nt
NT seq
+upstream
nt +downstream
nt
ctgctgctccagctgagctggctcaccacttcacaggcacgaccagaacaggacaccgca
ttcacagacggagtggacgttctaagaggcctgcatctcatagactctcacaagacagct
ccagaaggagtaataagaggtgactatggcgtcatcttacagaacaaggcgcgcatcaac
acacgggtcagcagagtcttcaaacagggaatcccctccgactttgccttcatacttgtc
ttccaatctttcaagaacttcacaactcatcttttttccatcaaggacaagcagaagaag
acacggctagctataagaataggagcgaaagatatccagttttactatgcagataggaaa
aacttccccggacgctactcgccggtgtttaattatacagcgaacgatggtagatggcac
ttcatgtcgtttaaagtgagtgaccaggaggtcacgatgtatacttcttgtggagagaag
aaggaccagcggaatctggtgagaaatccttttgacgagatcggaaaagaaggaaggatc
acgttgggtagactgaagagtaaaggcaaaaggtttcagggtgcaatatgtcagtttgag
atgtactacgaccctgccgtggctgctcagtactgcgactacatccgccagcgctgcctc
aattccatattggacttggacagcgttctctcgctacacgaaggtagagtgcacaacatg
aacatgcacgggggctcccctacggaggtccccgacactgtcgccgcagctactcctact
gtactgcctctatcgccctttcatcgcgtgaaaatcatgcccactaccaccacgcaggag
tctccgtggtatcccatatttacaggtcaacctgaagaagacatggagcccacatctgtt
tctaccaccaccaccaccctccccactcctggaaacccgacaccgccatcatccaccgct
catactggtcatgccgccttgaccttgtcaccatcttcttcccacaaagtaacctcggct
ggcggggcgagcttgccagccgctgtcactcattctccagcatctctgccaccctctctg
ccttctgcatatcccatctcacccccaggggaagccgacaggagccccacagtggagcct
ccaatgggagccaccattccatcagcggtcggcagcctggaccccaggcctgcctcaggg
gggcagaccagcactggggaaggcagctccggttctccggaccaccaggaacctaagccc
agtaccgaaccaccggtcattttctatgtggaggactctgaaggagagacgttattctac
atcgtaaaaggagagaaaggtgacaagggacgcgcgggtattcgtgggctacaggggtat
ccaggccctcaagggagaccaggtcaaccgggcccacctggtttttctggaagaactggc
tcacctggcttttctggactaaagggagagaagggtgatccaggatggatacccctggtg
gctatacctggcagaaagggagacaaaggttttcctggaatccctgggccgcctggaagg
aagggtctgaagggtgaccagggagaagatggccctatgggactacctggagaaaaagga
ccccctggccagctgggacaagaaggtctgaatgggttccaaggaagacagggaaagtct
ggtcctccaggtccacctggtcctaagggtgaaacaggtgacccaggaccacttggacct
cctggtttacgaggcatagatggagaaaagggtgagagagggcctcctgggaaacaggga
aaagtcggaagatcgggctttcctggagaccctggtccaagaggcccacccggatctgac
ggaggaccaggaagagctggaccatctggtcccataggacttcctggtttacctggtgac
aaaggctttccaggagagcgcgggaaaccaggacggcaaggcagagagggtgtccaagga
gatccaggacctgggggacccaaaggtgaaaagggtgagattggtgagtttggaccccct
ggagagcgtggcttcaaaggagaccctggtaccatcggagacataggtccccaaggccca
ctgggaaaacctggaggagtgggtgtgcagggagataaaggtgaacctggtgattctgga
cctgctggacccaagggctatcccggtgatattggcgttcctggtaaaaatggaccagcc
ggctctaagggagagggcggaccaatgggacctgagggtttgcttggccctcctggacct
gatcattgtagccagcagtccagccttatcagctttggtcctctcccaatgggcagagtg
gagactgttgggaccaaaccaaagctaacaagggcatcaagggagaccctgggggacctg
gtgaacctggtgggccgggagaaatcggtgcaccaggtgatgctggtattcccgggcctg
ctggggaaaagggagacagaggtccaggtggcaagcctggtccagcaggtggtaaagggg
aagatggtcatgaaggtcctgttggcccacctggactacctggcccacctggcccagaag
gtccgaaaggtatcccaggtatacccggcagaaggggaaagatcggatttgcgggtccac
aaggagaggaaggtattccaggatcagagggcaaacctggcaaagaaggtcctccaggta
tccaggggccaccgggaccagatgggtggactcggaccacttggcccaagaggtgaacca
ggacttaagggcttgtctggtgccaaaggtgctgttggtgaaatcggagaagacggtgat
ccaggagaacctggggccaggggagccatgggaactgtcggggaccaaggcttacagggc
agagatggagagccaggaccaccaggctttgaaggcttaagaggaccccgaggcagcaaa
ggtgctatgggaaaacttggaccccctggaaaagatggcccacctggtgcccctggtctg
gcatctgaggaacctggtgagaaaggagagaagggacaagagggttacccaggtgattca
ggacctgttggtcaacagggtcaaagaggagatccgggtctgaagggaccatcaggacca
gtggggttacctggtgcaattggacctcctggtgctgatggcaaaaccagtgaaagaggt
cgccctggcagagatggccctaagggcctgcgtggtaaccgtggtgcccgcggcttccct
gggttccagggagacccaggtccagttgggcccgaaggacaggagggtggcagagggtcg
gtgggagatgcgggaaaccctggagatcttggtcctcaaggagaagtgggattacttgga
catactgggaaagtaggggttgaaggtgtcaagggaagcagaggcaaccctggtgagccg
ggacagcgaggcgacgagggaaaaagaggaaaacaaggagagcccggtctagctggagat
gttatcatcagaggcccaagaggagctcctggtgaacctggatctccaggacctgcaggt
ccacccggtgttgatggaccaaaagggaagccaggcgacagaggctttcctggaccagtt
ggattcataggtgacacaggccctgttggtagccccggagttcctggtatgccaggcctt
gatggaatacgcggtgaagatggtgatcaaggcgaacagggccttatgggtccaccagga
gtcagaggtatcagaggaagtacaggcaacgtgggaagtcgaggagttattggaatgcca
ggggcaccaggcaaacagggaccaaagggggaaaagggggatgctggtgcacctggatta
ccaggcacaacaggctttcctggctttgatggctttcctggaacatggggaccaaaggga
gatcctggcaaacctggtacggtcggtgtcccgggtaccgctgggcagccaggcaggagg
ggcaaggtggggtctgctggcgcgccaggggtcaaaggtagcaggggaccaagaggagca
gagggagacgagggaaaccgtggctggaacggattccctggcccgctgggtatcaagggc
actgtaggtgaatatggttttgacggaagacttggacccaaaggccctcccgggaatgaa
gggttaaagggtgtgaaaggtccttctggtccagatggcaagccaggtccagagggcgaa
aagggagtaaagggtgaccgtggaacacctggtacgcatggcttgcggggtgcaccagga
cctcctggaagaccaggccctccaggcccaactgggacttttccctcactatctacctca
gaggagtttgatgccgccattaaacttctcctacagaacacacaacgggagtttgacatt
gaggtgcctcaaagggaccaacagcaaatgcatatggatgtttttgaaaccctccagtac
ctcacttcttacatagaaagtattaagaatcctctgggcacaaaagagaaccctgcgaga
acatgcagggacctagtggactgcaagtacaagagagatgacggaaaatattggattgac
ccaaatctgggctgttccaccgatgccatagaggtctattgcaactttacatcaggtgga
caaacctgtgttaaacctgccacacctggaagatttaacttcaccatagggaaagttcag
atgaacttcctgcacttactgagtgcagaggcagcacaagttgtcaccgtccactgtaaa
aacagccctgtatggagaacgccacacagaagtattcctggggtcaagtttaaaacgtgg
agcggtcctgtctaccactacggcgggccgttccaaccagaggttttagaagataattgt
atgaaagaagatggtaaatggcacaaaaccagattactgttcacaacaacagatgtccac
cacctacccatctcagatgttgttattccagaggacaaaagactaggtctccactacaga
atagaaatcagtcctgtctgtttcatatag
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