Branchiostoma floridae (Florida lancelet): 118421200
Help
Entry
118421200 CDS
T01074
Name
(RefSeq) coatomer subunit alpha-like isoform X1
KO
K05236
coatomer subunit alpha
Organism
bfo
Branchiostoma floridae (Florida lancelet)
Brite
KEGG Orthology (KO) [BR:
bfo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
bfo04131
]
118421200
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
bfo04147
]
118421200
Membrane trafficking [BR:
bfo04131
]
Endoplasmic reticulum (ER) - Golgi transport
Retrieval pathways
Coat protein complex I (COP-I)
118421200
Exosome [BR:
bfo04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
118421200
Exosomal proteins of bladder cancer cells
118421200
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
COPI_C
B-prop_COPA_B_2nd
WD40
WD40_Prp19
WD40_WDHD1_1st
WD40_CDC20-Fz
WDR55
Beta-prop_EML_2
TPR_COPA_B
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML
EIF3I
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_WDR75_1st
Beta-prop_EIPR1
Beta-prop_TEP1_C
WD40_MABP1-WDR62_1st
ANAPC4_WD40
WD40_MABP1-WDR62_2nd
WD40_RFWD3
Beta-prop_SCAP
Beta-prop_SPT8
Beta-prop_DCAF4
Beta-prop_IFT140_1st
NBCH_WD40
Beta-prop_WDR19_1st
Beta-prop_RIG_2nd
Motif
Other DBs
NCBI-GeneID:
118421200
NCBI-ProteinID:
XP_035684258
UniProt:
A0A9J7LLB0
LinkDB
All DBs
Position
1:17176086..17189153
Genome browser
AA seq
1226 aa
AA seq
DB search
MLTKFETKSARVKGLAFHPKRPWILASLHNGVIQLWDYRMCTLIDKFDEHDGPVRGISFH
QQQPLFVSGGDDYKIKVWNYKQRRCLFTLLGHLDYIRTTFFHHEYPWIISASDDQTIRVW
NWQSRTCICVLTGHNHYVMCAQFHPSEDMVVSASLDQTVRVWDIAGLVLRKKNVAPGPGG
VEHRPDNTPDLFGTSDAVVKHVLEGHDRGVNWAAFHPSMPLIVSGADDRQVKLWRMNESK
AWEVDTCRGHYNNVSCCLFHPRQELILSNSEDKSIRVWDMSKRTAVQTFRRDHDRFWVMA
AHPTLNIFAAGHDSGMVIFKLERERPAYATNGNILYYVKERYLRQLDFNSSKDVAVMQLR
SGSKHPVYSMSHNPAENAVLLTTRTPNVENSTYDLYAIPKDTDSSSPDAPEGKRSSGLRA
VWVARNRFAVLDRTHTILIKNLKNEITKKVQVPNCDDVFYAGTGMLLLRDSDSMTLFDVQ
QKRTLGTVRVSKVKYVIWSSDMSHVALLSKHVIAICNRKLDSLCTIHENVRVKSGAWDES
GVFIYTTSNHIKYAISNGDYGIIRTLDLPIYITRVKGSSVYCLDRDCRPRVLSIDPTEYR
FKLALINRKYDEVLHMVRNAKLVGQSIIAYLQKKGYPEVALHFVKDEKTRFGLALECGNI
EVALEAAKALDDKSCWNRLGEMALLQGNHQVVEMAYQRTKNFDKLSFLYLITGNLDKLRK
MMKIAEIRKDTSGHYQNALFLGDVAERTKILRACGQKSLAYLTAATHGLEEEADAIRETF
DPEKDKLPEVDSSAKLMAPPPPCLQWETNWPLLTVTKGFFESAMTQKGKALAAEHEIEDV
AGGAWGDDAELIIDDEGGWGTTGEGLDEEGLGGDGEDAGWDVGDEDLELPADLDVGPGPA
MGGDEEGYFVPPTKGVSQGQVWCNNSQLPVDHILAGSFETAFRLLHDQVGVVDFSTYQSL
FMLTMARARTAYIGVPSLPNLFGYPHRNWKEAGARAGMAAVGLKLNDLVQRLQQCYQLTT
GGKFQEAAERFRSLLLSVPLLVVDNKQEISEAQQLLAICKEYIVGLSMEISRKEQPKANL
DQQKRICEMAAYFTHTQLQPIHLILTLRTALNLFFKLKNFKTAASFARRLLELGPKPEVA
QQTRKILQACEKNLTDTHELEYDQHNPFDICASTYKPIYRGKPVEKCPLCGACYQPQFKG
SVCTICKVSEVGKDCIGLRISQIQFR
NT seq
3681 nt
NT seq
+upstream
nt +downstream
nt
atgctgaccaagtttgagaccaagtcggcacgagtgaagggtttggctttccacccgaag
cggccatggatcctcgccagtttgcacaatggggtcatccagctctgggactaccgcatg
tgcactctcatcgacaagttcgacgaacatgatggacctgtccgaggtatcagcttccac
cagcagcagcccctgtttgtgtcaggaggagatgactacaaaatcaaggtttggaactac
aagcagcgccggtgcctctttacattgctgggtcatttggattatatccggacaactttc
ttccaccatgaatacccatggatcatcagtgcttctgatgaccagaccattcgagtctgg
aactggcagtcccggacgtgtatatgtgtgctgacaggacataaccactacgtcatgtgt
gcccagttccatcccagtgaagacatggtggtgtctgcctctctggatcagactgtccgt
gtctgggacatagctggtctagtattacggaagaagaacgtggcaccaggaccaggtgga
gtggaacaccggcctgacaacacaccagatctctttgggacctccgatgcagtggtgaag
catgtgttggagggccatgaccgtggggtgaactgggcagccttccacccctccatgccc
ctgattgtgtccggtgctgatgaccggcaggtcaagctgtggaggatgaacgagtctaag
gcctgggaagtggacacctgtcgtggccactacaacaacgtgtcatgttgtctgttccac
ccccggcaggagctcatcctcagtaactctgaggacaagagcatcagggtctgggacatg
tccaagaggacggctgtacagaccttccgccgcgaccacgaccgattctgggtgatggct
gcccaccccaccctcaacatctttgcagcaggtcacgacagtgggatggtcatcttcaag
ctggagcgagaacgtcctgcctatgctacaaacggaaacatcctgtactatgtgaaggag
cgctacctgaggcaactggacttcaactcctccaaggatgtggctgtcatgcagctgaga
agtggttccaaacatccagtgtacagcatgtctcataaccctgctgaaaacgcagtactc
ctgaccacccgcaccccaaatgtggagaacagcacgtacgacttgtacgccattcccaag
gacacggattcctccagccctgacgccccggagggcaaacgttcgtctggtctgcgtgca
gtgtgggtggcacggaacaggttcgctgttctggacaggacacatacgatcttgataaag
aacctgaagaatgagatcactaagaaagtgcaggtgcccaactgtgatgatgtgttctat
gctggtactgggatgttgttgctgagggattccgacagcatgactctctttgatgtgcag
cagaagagaaccctgggcactgttcgtgtctccaaggtcaagtacgttatctggtccagt
gacatgtcccacgtggctctcctcagcaagcatgtgattgctatctgcaaccgcaaactg
gacagcctgtgcaccatccacgagaacgtccgtgtgaagagtggagcctgggacgagagt
ggggtcttcatctacaccacatccaaccacatcaaatatgccatcagtaatggtgactac
ggcatcatccgtaccctggacctgcccatctacatcacccgtgtgaagggcagcagcgtg
tactgcctggatagggactgtcggccacgtgtcctcagtatcgaccctacagagtacagg
ttcaaactggctctcatcaacaggaaatatgatgaggttctgcacatggtgcggaatgcc
aaactggtaggtcagtccatcattgcctatctacagaagaaggggtaccccgaggtagcc
ctgcactttgtaaaggatgagaagactcgctttggactggctttggagtgtggcaacatt
gaggttgcccttgaggctgccaaggcccttgatgacaagagctgctggaaccgtctgggt
gagatggccctgctgcaagggaaccaccaggtggtggagatggcctaccagagaaccaag
aacttcgacaagctgtccttcctctatctcatcacggggaacctggacaagctgcgcaag
atgatgaagattgctgagattaggaaggacaccagtggacactaccagaatgccctgttc
ctgggagatgttgcagagaggacaaaaattctacgtgcctgtggacagaagtcattagct
tacctgacagctgccacccatggactggaggaggaagctgatgccattcgtgagaccttt
gatcctgaaaaggacaagctgcctgaagtggattccagtgccaagctgatggcgccacca
cctccctgcctacagtgggaaaccaactggcctctcctgacagtcactaagggcttcttt
gagagtgccatgacccagaagggcaaagctttggcagcggaacatgagatagaggatgtg
gcaggaggagcctggggagacgatgcagaactcatcattgatgatgagggtggttggggc
acgacaggtgagggtctggatgaggagggactgggtggagatggggaggatgcaggctgg
gatgtgggagatgaggacctggaactgcctgctgacctggatgttggtccaggtccagcc
atgggaggggatgaggagggctacttcgtcccgcccaccaagggtgtgagccagggccag
gtgtggtgcaacaactcccagcttcctgtggaccacatcttagctggatccttcgaaact
gccttcaggttgcttcatgaccaagtgggagttgtggacttctccacctaccagagcctg
ttcatgttgaccatggctcgcgctcgcactgcatacattggtgtcccatcgctgcccaac
ctgtttggctatccacaccgaaactggaaagaagcaggtgcccgtgctggcatggcagca
gtaggtctgaagctgaacgacctggtgcagagactacagcagtgctaccagctcacgacc
ggtgggaagttccaagaggcggcggaacgtttccgcagcctcctgctgagtgtgccgctc
ctggtggtggacaacaaacaggaaatctcagaagcacagcagctgcttgctatctgtaag
gagtacattgtaggcctgtccatggagatctcccgcaaggagcagcccaaggcaaatctg
gaccaacagaaacgcatctgtgagatggcagcatacttcacccacacccagctgcagccc
attcacctcatcctcaccctgaggacggctctcaacttgttcttcaagctcaagaatttc
aagacagctgcatcgtttgccagaagactgttggagctgggtcccaaacctgaggtggca
caacagacacgaaagattcttcaggcatgtgagaagaacctgactgatacacatgagctg
gagtacgaccaacacaacccgtttgacatctgtgcatccacatacaagccaatctataga
gggaagccagttgagaaatgtcccctgtgtggggcatgttaccagccacagttcaagggg
tctgtctgcaccatctgcaaggtttcagaggttggcaaggactgcataggactacgtatc
agccagatccagttcagataa
DBGET
integrated database retrieval system
