Branchiostoma floridae (Florida lancelet): 118421257
Help
Entry
118421257 CDS
T01074
Name
(RefSeq) voltage-dependent calcium channel type A subunit alpha-1-like isoform X1
KO
K04849
voltage-dependent calcium channel N type alpha-1B
Organism
bfo
Branchiostoma floridae (Florida lancelet)
Brite
KEGG Orthology (KO) [BR:
bfo00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
bfo04040
]
118421257
Ion channels [BR:
bfo04040
]
Voltage-gated cation channels
Calcium channel, voltage-gated (Cav)
118421257
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
GPHH
Ca_chan_IQ
PKD_channel
TPR_12
TPR_8
Motif
Other DBs
NCBI-GeneID:
118421257
NCBI-ProteinID:
XP_035684353
UniProt:
A0A9J7LM53
LinkDB
All DBs
Position
8:9282921..9411425
Genome browser
AA seq
2446 aa
AA seq
DB search
MSDLATRASRGLANVASGLIKFNVEQKKQPMRRDYSAHEQIMQSDDQNALSVPDQLDGQD
GYQYEGSPRMGRRHGLTSGHREAAMASSQASRTTTSLQKDLEMASFSASGAGPPMNPEER
RRQLEERRKYKHTVARRARTMAYYNPIPAQKNCITDNRSLFILREDNIIRRYCKRITEWG
PFEYFILLTIMANCVVLAMEDHLPNKDRTPLAIKLELTEPYFLGIFCVEAAVKIIALGFV
LHKGSYLRNGWNIMDFVVVVTGLMSTFVQSNNVDLRTLRAVRVLRPLKLVAGIPSLQVVL
KSIIRAMAPLLQIALLVLFAILIFAIIGLEFYTGIFHLACHNNVTGELVEEQVCGANFSL
VNSTLYMCNEGELCIEYWDGPNNGITNFDNIGYAMLTVFQLITMEGWTQVLYWCNDSLGN
SFNWLYFIPIIILGSFFMLNLVLGVLSGMFAKERERVENRREFLKMRRQAQIEKELNGYL
EWICKAEEVILAEAAQREEVILAEDKEAEQKRKAKQRKLGKGKGASQEGDGFSNKKEDEG
GTCPSWKVFEKRVRYGIRRIVKTQVFYWGVICLVFLNTICTAMVHHGQDPLLTNFLDFAE
IGFLCLFILEMLVKMYGLGPKQYFRSAFNRFDCAVIIGSIFEVVWTTLKPGQSFGISVLR
ALRLLRIFKVTKYWGALSNLVISLLNSMRSIISLLFLLFLFLLIFALLGMQLFGGEFNFD
DGRPASNFDTFPIALLTVFQILTGEDWNEVMYAAIKAKGGVKGQGMIYSSYFIILVMFGN
YTLLNVFLAIAVDNLANAEEITKGDVEEDEEKAKAREQKIKEELKDFSPTSGPPHGPTTI
IALEDKKKLADNSPRTNHDTVDGRGRSQSRGGDRTRGRSPLDPRAPQERQSRRDRPRRRP
PSNIPEEFQRNNPARSSRQSRDSSLPPDGRAGPRHPRMDGNRRNRDSSLDGGMGPRRRDR
SSSDARNDPGRRSRRDIGRTPDDDQRKRRRRRQPNDQDTDVTDSGIDTLQGRRRHKRRDA
DERDEFGKSMQRDEHGDRRGTMDGDGEKAEHKEEYGEPKPMVPYSSMFIFSTTNPVRLAA
HWIINLRFFDPAIMFVIVCSSITLAAEDPVNKVSQRNEILKYFDYVFTGIFTFEMTIKLI
DMGVVLHKGAYFRDLWNFLDAVVVTGALVAFAFSGSQGGGKNLNTIKTLRVLRVLRPLKS
IKRLPKLKAVFDCVIHSIKNVINILIVYMLFQFIFAVVAVQLYKGKFYYCTDASKNKEES
CQGYYLEYNDDEVNVQPREWKRRDFHYDNVFWALLTLFTVTTGEGWPAILQWSMDSTTED
TGPSPGYRKEMAIYYVVYFVVFPFFFVNIFVALIIITFQEEGEKQALESGILDKNERNCI
DFAMNAKPMTRYMPENKKSFQFKMWKFVVSPPFEYFIMAMIALNTVALMCRHYKQTADWD
EILNYFNIAFTSLFGLECILKMIGFGPRNYFRDAWNVFDFITVVGSVTDILVSNFGGDFA
DNFISLSFLRLFRAARLIKLLRQGETIRTLLWTFIQSFKALPYVVLLIAMLLFIYAIVGM
QVFGNIALDDETEIHRHNNFRTFIQGLMVLFRCATGEAWQEIMLSCLPGAECDAQSEDPG
PNCGSTFAYFYFTSFIFLCSFLMLNLFVAVIMDNFDYLTRDTSILGPHHLEEYIRVWADF
DPGATGRISYTDMFDLLKQLNPPLGFGRKCPARVAYKRLIRMNMAVDDNKTVHFTTTLFA
LIRTSLNIKIDKPELQNKADRELRDALINTWPQVPRKTIDMLMPPDEELRKDRLTVGKIY
GALLLHDYFKQWKAKKLKEQTRGDGRKVLRQQSSFFQRMINTFTPSKEDVRAENAGPALP
GAQQPKLFGNANLNVPDRDGNPHPTATASSSNNPNHSQAIEMRPLENNTRTIETEPSRST
SMSKFGAPQYDRDAVRRSASMQANGRTAGQYSEDPLGILNTAQYTPEAKLAYILAFCDFQ
HIPLHYLREGYKKLNTVALSESVLRVGSELGGESVDFYANIKLLTQTRYLIKEDTPKAMV
SMRPLTQKCARGALSNSEICLYINCLAMTITQQYRDGGRAAVQDALYEHAEQVLLYSENY
GVYSHSVGLLYLAVGRYLSHTGHFVEAENHYTKAMNCVADNTNTGPDLDMDPAFLQAIIN
KEMGKTWHRCGNLDQAVDLLMNADDVLGSSRDGPAVKTRYPEPSNLWLIAERLDCCDSFA
KVFTDKGDFTTASTWIAKAEGLLRTPGLVGVQRYTENVAIYYRHVLDSTIERFYIAQDDY
RKGTGYYAQLMSVTDTTNVRFAFMQSQYWSMRVSELEEPDIDLLEEAAHKVLKSQAILVR
KVGKKHSSYAWNCRILASILARMDDRLEEALDKLEEAEAIQQTTYPNHEQLGQTCYLQGL
VYLDIDRLQEGKEYLQAAMEYFGPQHPRALTIIPLLMGELSGYSEA
NT seq
7341 nt
NT seq
+upstream
nt +downstream
nt
atgagtgacttggcgacccgcgcgtctcgcggcctggcgaatgtcgcctctggcttgatc
aagttcaacgtcgagcagaagaaacagcccatgcggcgggactattctgcgcacgagcag
atcatgcagtctgacgatcagaatgcgctgtcggtcccggaccagctcgacggtcaggat
gggtaccagtacgagggttccccgcgcatgggcagacgacatgggctgacgtccggtcac
agggaagccgccatggcctcctcacaggcctcgcgcacaactacgtcactacagaaggac
ctagagatggcttccttctcggcttccggggccgggccgcccatgaatccagaggagagg
cggcggcaactggaggaacgccggaaatacaagcacacggtggcccggcgggcccgtacc
atggcctactacaaccccatccccgcacagaagaactgtatcaccgacaaccggtctctc
ttcatcctgagggaagacaacatcatccggaggtactgcaagagaataacggagtggggg
ccatttgaatattttattctccttacgatcatggcgaactgcgtggttctagcgatggag
gaccatctcccaaacaaggacaggactccgcttgccatcaaactggaactcacggaaccg
tactttttgggcatattctgcgtggaagccgccgtgaaaataatcgccctgggctttgta
ctacataaaggctcgtacttacggaacggctggaatatcatggatttcgtagtcgtagtc
accggcctcatgtctacctttgtccaaagtaacaatgtcgatttgcgcacccttcgagcc
gtgagggtgttacgaccactcaagttggtggcaggaataccaagtcttcaggttgtattg
aaatccatcatccgtgccatggcgcccctgctgcagatcgccctcctggtgttgtttgcc
atcctcatttttgccatcataggccttgagttctacactgggatctttcacctggcctgc
cataacaatgtaacaggggagctcgtagaggaacaagtctgcggtgcaaacttttcgtta
gtgaatagtaccttgtacatgtgtaatgagggggagctgtgcatcgagtactgggacgga
cccaacaacgggatcaccaacttcgataacatcggctacgccatgttgaccgtcttccaa
ctgatcaccatggagggctggacccaagtgctatactggtgcaatgattccctggggaac
agcttcaactggctgtacttcatccccatcatcatcctgggctcgttcttcatgctcaac
ctggtccttggtgtcctcagtggaatgtttgccaaggagagagaacgagtagaaaacagg
agggaattcctgaagatgagacgccaagcacaaatagaaaaggagctcaacggatactta
gagtggatctgcaaagccgaggaggtgattcttgctgaagctgcccagcgtgaggaggta
atattagcagaagacaaagaagctgagcaaaagaggaaagccaaacaacgcaagcttgga
aaagggaaaggagcttcccaagaaggagatggcttctctaacaagaaagaggacgagggt
gggacctgtccaagctggaaggtatttgagaagagagtccgatatggcataaggcgcatc
gtgaagacccaggtgttctactggggtgtgatctgcctcgtattcctcaacactatctgc
actgccatggttcaccacggacaggaccctctactcacaaacttcctagattttgccgag
attggcttcctctgcctcttcatactggaaatgcttgtgaagatgtatgggctgggtccc
aaacagtacttcagatcagcgttcaaccgctttgactgtgctgtcatcattgggagcata
tttgaagtggtgtggactaccctgaaaccaggacaatccttcggcatttcagtactccga
gctcttcgtctcctcaggatattcaaagtaacaaagtactggggagcgctgagcaatctt
gtaatttccctgctgaactcgatgcgctccatcatcagcttgttgttccttctcttcctc
ttcctgctcatctttgcccttctagggatgcagctgtttggaggagagttcaactttgac
gatggcaggcccgcaagcaactttgataccttcccaatagcattgctgacagtattccag
atcttgaccggtgaggattggaacgaggtaatgtacgctgccatcaaggctaagggagga
gtcaaagggcagggaatgatctacagctcctacttcatcattctcgtcatgtttggcaac
tacaccctgctcaatgtgttcttggccatcgctgttgacaacttggccaatgccgaagaa
attacaaaaggcgatgtagaagaagacgaggagaaagctaaagctcgagaacagaagatt
aaggaggaactgaaagatttcagccccacctctggccctccacatggccctaccaccatt
atagctttagaggacaagaaaaagttagcagacaactcgcctagaaccaaccacgacact
gtggacggccgcggccgctcgcaaagtcgcgggggtgacaggactcgaggtcgctccccg
ctggatccaagggccccgcaggagagacagtcgcgtagggaccgcccccgccgcaggccg
cccagtaacattcccgaagaattccagaggaataacccggccaggtccagccgccaatcg
cgtgacagcagcctgcctcccgacggccgcgcaggcccccgtcaccccaggatggacggg
aaccggaggaaccgcgactccagtctggacggtgggatgggtcctcggaggagagacaga
agtagttctgatgcgaggaacgacccggggaggaggagccggcgcgacatcggcaggacg
ccggacgatgaccagcggaaacggcgccgccgcaggcagccaaatgaccaagacaccgac
gtcacagacagtggcatagacacattacaaggcagaagacgtcacaaaagacgggatgct
gatgagagagatgagtttggtaagtccatgcagagagatgagcatggtgataggagaggc
actatggatggtgatggagaaaaagcagagcataaagaggaatacggggagcccaaaccg
atggtgccttatagttccatgttcatcttctccaccaccaatcccgtgcgtcttgctgcc
cattggatcatcaacctgcggttctttgatcccgccatcatgtttgttattgtctgcagt
agtatcacactagcagctgaagatcctgtcaacaaagtctcgcagagaaacgagatcctg
aaatattttgactatgttttcactgggattttcacatttgaaatgaccataaagttgatt
gacatgggagtggtgttacacaagggtgcctacttcagggacctttggaactttctggat
gcagtggttgtgacaggtgctctggtcgcctttgcattcagtggttcccaaggaggaggg
aagaatctgaacactatcaaaacacttcgggtgttgagagtgctcagaccgcttaagtct
atcaaaagactaccgaaactcaaggccgtgtttgactgtgtaatccactccatcaagaac
gtcatcaacatcctgattgtttacatgctgttccaattcatctttgccgtggtggccgtg
cagctctacaagggcaagttctactactgcaccgacgcctccaagaacaaggaggaatcc
tgccagggttattatttagaatataacgatgacgaagtcaacgtgcaacccagggagtgg
aagcgaagagacttccattatgacaatgtgttttgggccctcctaacactcttcactgtc
actactggggaaggatggccagcgatcttgcagtggtccatggattccaccacggaagac
accggaccatctccaggctaccgtaaagaaatggctatctactacgtggtctacttcgtt
gtgtttccgtttttctttgtcaacatttttgtggccttgatcatcatcaccttccaagag
gaaggtgaaaagcaggcactagaatccggcattctagacaaaaacgagagaaattgtata
gactttgccatgaatgccaagcctatgaccagatatatgcccgagaacaagaagtccttc
cagttcaagatgtggaagttcgtggtctccccaccgttcgagtacttcatcatggccatg
atcgcgctgaacaccgtcgccttgatgtgcaggcattataaacagactgcagactgggac
gaaattcttaactacttcaacattgccttcacttccttgtttggactggagtgcatcctg
aagatgataggctttggaccaaggaattacttccgcgatgcatggaacgtgtttgacttc
atcacggttgtcggtagcgtaacggacatcctggtgtccaactttgggggagactttgcg
gacaacttcatcagcctgagcttcctgaggcttttccgagccgctcgactcatcaaactg
ctcaggcagggagagaccatccggactctgctctggacatttatccagtcttttaaggcc
ttaccctatgttgtcctgctcatcgccatgctgttattcatatatgccattgtgggaatg
caggtttttggtaacatagctctagatgatgaaactgagatccacaggcataacaacttc
agaaccttcatacaagggctcatggttctattcaggtgtgcgacaggagaggcatggcag
gagatcatgctgtcctgtttaccaggagcagagtgtgatgcacagagcgaggaccccggc
cccaactgtggcagcacattcgcctacttctacttcacatccttcatcttcctctgctcc
ttcttgatgttgaatctgtttgttgctgtcatcatggacaactttgactacttgacacgg
gacacgtccatcctaggcccccaccacttggaagagtacatccgagtctgggctgacttt
gacccaggagcaactggcaggatatcatacactgatatgtttgacctgctgaagcagctc
aatccaccactgggcttcggaaggaagtgtcctgctagagtggcctataagaggttgatc
cgaatgaacatggccgtagacgacaacaagaccgtccatttcaccaccaccctgtttgcc
ttgatccggacttctctcaacatcaagatagataaacctgagctacagaacaaggcagat
cgagagctgagagacgccttaatcaacacctggccacaagtgcccaggaaaaccatcgac
atgctcatgccacctgacgaagagctgcggaaagaccgcctgactgtgggtaaaatctac
ggagctctgctactacatgactactttaaacagtggaaggcaaagaaactcaaagaacag
acaagaggcgatggaaggaaggtactacgacaacagagctcatttttccagagaatgatc
aacacctttactccctccaaagaggatgtaagggcagaaaatgcgggtcctgctctacca
ggtgcccaacagcctaaactttttggaaacgcaaacttaaatgtgccagatagagatggc
aatccacatccaacagctactgctagtagctccaacaatccaaaccactcacaggcaatt
gagatgagacctttggagaacaacacgagaactattgagacagaaccttcaaggtcaacc
tccatgtccaagtttggagcaccacagtatgatagggatgctgtaaggagatcggcgtcc
atgcaggccaacggtaggacagctggacagtactctgaagacccgttgggcatattgaac
acagcccagtacaccccagaagccaagcttgcctacatcctggccttctgtgacttccaa
cacatcccgcttcattacctccgggagggctacaagaagctgaacacggtcgccttgagc
gagtccgtccttagggtaggcagcgaactcgggggcgagagcgtcgacttctacgccaac
atcaagctgctgacccaaacacgttacctcatcaaggaggacacgcccaaggccatggtg
tccatgcgacccttgacccagaagtgtgcgcgaggcgcactgtctaacagcgagatctgc
ttgtacatcaactgcctggccatgaccataacccagcagtatcgcgatggcgggagggcg
gccgtacaggacgctctatacgagcacgcggaacaggtcctgctatacagcgagaactac
ggcgtgtattcccactccgtgggtctgctgtacttagcggtagggcggtacctctcgcat
acaggacactttgtggaggcagagaatcactacaccaaggccatgaactgtgtggctgac
aacacgaacacgggaccagacctggacatggacccggccttcctacaggccatcatcaac
aaggagatgggcaaaacatggcacagatgtggaaacctggaccaggctgtggacctcctg
atgaatgctgatgacgtcctgggcagctcgcgggacggtcccgccgtgaagaccagatat
cccgaaccgtccaacctctggctcatcgccgagaggcttgactgctgcgacagcttcgcc
aaagtcttcaccgacaagggagacttcaccactgcgtctacgtggatcgctaaagcagag
gggctcctacgcacgcccgggttggttggcgtgcagcgctacacggaaaacgtggccatc
tactaccgacacgtcctggacagcaccatcgagaggttctatatcgcgcaggacgattac
cgtaagggcacagggtactacgcacagctgatgtcggtgacggatacgacgaacgtgcgg
tttgcgttcatgcagtcacagtactggtccatgagggtgtcggaattggaagagcctgat
atcgacctgttggaggaggctgcacacaaagtgctgaagtctcaggccatactggttcgt
aaagttggcaagaagcacagcagttacgcgtggaactgccgcatcctggcgtccatcctg
gccaggatggacgatcggctggaggaggcactggacaagctggaggaggctgaggccatc
cagcagaccacctaccccaaccatgaacaactggggcagacatgctatctacaaggcctg
gtgtacttagacatagacagactacaggaggggaaggagtatctccaggctgctatggag
tacttcggacctcagcatccgcgggccctcaccatcatccccctcctcatgggggaactc
agcggctactccgaggcctag
DBGET
integrated database retrieval system
