Branchiostoma floridae (Florida lancelet): 118421259
Help
Entry
118421259 CDS
T01074
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein Prp4-like
KO
K12662
U4/U6 small nuclear ribonucleoprotein PRP4
Organism
bfo
Branchiostoma floridae (Florida lancelet)
Pathway
bfo03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bfo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
118421259
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
bfo03041
]
118421259
Spliceosome [BR:
bfo03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
118421259
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_EML_2
EIF3I
Beta-prop_CAF1B_HIR1
WDR55
WD40_MABP1-WDR62_2nd
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_1st
Beta-prop_WDR75_1st
PRP4
Beta-prop_DCAF4
Beta-prop_WDR90_POC16_2nd
WDR90_beta-prop_4th
NBCH_WD40
ANAPC4_WD40
Beta-prop_EML
Beta-prop_TEP1_C
Beta-prop_IFT122_1st
Beta-prop_SCAP
Beta-prop_EIPR1
Beta-prop_Vps41
WD_LRWD1
Ge1_WD40
Beta-prop_WDR19_1st
Beta-prop_Nup120_160
Beta-prop_IFT140_1st
Motif
Other DBs
NCBI-GeneID:
118421259
NCBI-ProteinID:
XP_035684368
UniProt:
A0A9J7LM63
LinkDB
All DBs
Position
8:complement(9412068..9426818)
Genome browser
AA seq
509 aa
AA seq
DB search
MSDDEDVQLPSKKAKIVHFGSLEEVERQRLAKQEGQGSLGSDAVQAGILSGNINISEGET
FDLEEHQSERQKEVLEEFERRKRARQIHVSTDDSEVKAQLRQLGEPICLFGEGPADRRER
LRQILAKIGEDKLKKDSAEEKKEEKKEYNDTTWYHEGPQSLKEARMFIAGYSIPRAKKRL
EKAREAKEIPAAQKNARMQELHRQLRALTNYGSQIGDSRPISFCQFSPNSKLLATSSWSG
LCKLWSVPDCKLVRTLRGHNQNVGCVVFHPQATLTLEDSACCMASCSADGVVKLWSLESD
EPVANIEGHEARVARVAYHPSGRFLGTTCYDKSWRLWDLEAQEEVLHQEGHSKEVYDISF
QCDGSLCATCGLDAFGRVWDLRTGRCVMFLEGHLKELFAITFSPDGYHVATGSADNTAKV
WDVRQRKCVYTIPGHTNLVSGLKYQGSEGQYLVTASFDCTAKVWAHPGWSPLKTLAGHEG
KLMAVDVSPDSKFIATSSYDRTYKLWAAE
NT seq
1530 nt
NT seq
+upstream
nt +downstream
nt
atgtctgacgacgaggatgttcagctgccatccaagaaggcaaaaattgtgcactttggc
agtctggaggaagtagagagacaacgactggctaagcaggagggtcaagggtcactgggg
tctgatgcagtgcaggctgggatactttcaggaaacatcaacatatcagaaggagagacc
tttgacctggaagagcatcagagtgagagacagaaggaagtcttggaggaatttgaaaga
agaaaaagggccagacaaatccatgtgtccaccgacgactcagaagtgaaagcacaactg
agacagcttggagagccaatatgtttgtttggagagggtccggcagacaggagagaacgt
ctacgtcagatcctcgccaaaatcggagaagacaaactcaagaaggactcggccgaggag
aaaaaggaagaaaagaaagaatacaacgacactacctggtaccatgagggaccacagagt
ctgaaagaagccaggatgttcatagctggctactccataccaagagctaagaagaggctg
gagaaagctcgtgaagctaaggaaatcccagctgcccagaaaaacgcccggatgcaagaa
ctgcacaggcaactcagagccctgaccaactatggcagtcagataggagacagtcgacct
atctccttctgtcagttcagcccaaactccaaacttctagcaacatcatcatggtcaggc
ctgtgcaagttgtggtcagtgccggactgtaagctggtcagaacattacgaggacacaac
cagaatgttgggtgtgtagtgttccacccccaggccaccctaaccctggaggattccgcc
tgctgtatggcttcctgtagtgctgacggtgttgtaaaactttggtctctggaaagcgat
gaaccagttgcgaacatcgagggccacgaggccagggtcgccagagtagcgtaccatcca
tccggcaggttcctggggacaacatgttatgacaagtcctggagactgtgggacctggag
gcccaggaggaggtcctacatcaggagggccacagtaaggaggtgtacgacatctcattc
cagtgtgacggctcactgtgcgctacatgtggcctggatgcgtttggccgtgtgtgggac
ctgcggacaggcaggtgtgtcatgttcctggagggtcacctgaaggagctgttcgctatc
acattctcacctgatgggtaccatgtggccacaggaagtgcagataacacagctaaagtt
tgggatgtgagacagaggaagtgtgtgtacaccatacctgggcacaccaacctggtctca
ggactcaagtatcaaggctcagaaggacagtatctggtcacagcttcttttgactgcaca
gcaaaggtctgggcccatcctggttggtcgcctctgaagacccttgcaggacatgaaggg
aagctgatggctgtcgacgtctctcccgacagcaagttcatcgctacttcgtcgtacgac
cgcacgtataaactctgggccgctgaataa
DBGET
integrated database retrieval system
