Branchiostoma floridae (Florida lancelet): 118421550
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Entry
118421550 CDS
T01074
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm2
KO
K12621
U6 snRNA-associated Sm-like protein LSm2
Organism
bfo
Branchiostoma floridae (Florida lancelet)
Pathway
bfo03018
RNA degradation
bfo03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bfo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
118421550
09123 Folding, sorting and degradation
03018 RNA degradation
118421550
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bfo03019
]
118421550
03041 Spliceosome [BR:
bfo03041
]
118421550
Messenger RNA biogenesis [BR:
bfo03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
118421550
mRNA degradation factors
5'-3' decay
Lsm complex
118421550
Spliceosome [BR:
bfo03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
118421550
Complex C
U2 snRNP components
118421550
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
SM-ATX
Motif
Other DBs
NCBI-GeneID:
118421550
NCBI-ProteinID:
XP_035684781
UniProt:
A0A9J7MZX5
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All DBs
Position
8:8570795..8573824
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AA seq
95 aa
AA seq
DB search
MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQFLNIKLTDISVTDPEKYPHMLSVKNC
FIRGSVVRYVQLPADECDTQLLQDAARKEAAQNKQ
NT seq
288 nt
NT seq
+upstream
nt +downstream
nt
atgttgttctattcattcttcaagtctctggtgggcaaagacgttgtcgtggagctgaaa
aacgacttgagcatctgtggtacattacattcagtcgatcagttcctgaacatcaagttg
acagacatcagtgttacagacccagagaagtacccacacatgttatcagtaaagaactgt
ttcatccgcggttccgtggtgcggtacgttcagctaccagctgacgagtgtgacacacag
ctgctacaggatgcagccaggaaagaagcagcacagaacaaacaataa
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