Branchiostoma floridae (Florida lancelet): 118422087
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Entry
118422087 CDS
T01074
Name
(RefSeq) E3 ubiquitin-protein ligase COP1-like
KO
K10143
E3 ubiquitin-protein ligase RFWD2 [EC:
2.3.2.27
]
Organism
bfo
Branchiostoma floridae (Florida lancelet)
Pathway
bfo04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
bfo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
118422087
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
bfo04121
]
118422087
Enzymes [BR:
bfo01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
118422087
Ubiquitin system [BR:
bfo04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
118422087
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
118422087
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_CDC20-Fz
WD40_Prp19
WD40_WDHD1_1st
Beta-prop_EML_2
Beta-prop_EIPR1
Beta-prop_TEP1_2nd
WDR55
zf-C3HC4_2
Beta-prop_RIG_2nd
EIF3I
Beta-prop_EML
zf-C3HC4
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_C
Beta-prop_WDR19_1st
zf-RING_2
Beta-prop_HPS5
zf-RING_UBOX
zf-C3HC4_4
zf-C3HC4_3
zf-RING_5
WD40_like
Beta-prop_DCAF4
Beta-prop_WDR90_POC16_2nd
RING_XB3-XBAT31
Beta-prop_Vps41
Beta-prop_DCAF12
Beta-prop_IFT122_1st
WD40_RFWD3
Beta-prop_WDR35_TULP_N
zf-rbx1
Beta-prop_IFT140_1st
bZIP_1
zf-RING_10
Sina_RING
Saf4_Yju2
zf-Nse
Motif
Other DBs
NCBI-GeneID:
118422087
NCBI-ProteinID:
XP_035685519
UniProt:
A0A9J7N0G3
LinkDB
All DBs
Position
8:complement(11553417..11582228)
Genome browser
AA seq
640 aa
AA seq
DB search
MAGRTPTRRRLKRPQPPIYNGIINTDEDKNNDFVCPICFDMIEEAHMTKCGHSFCFKCIQ
QSLEESNRCPKCNFVIEKTDQIFPNFLLNELILKHRQRLEERKRVKLDQPNGMKLTEFQE
LLSHEDDNLDITDVNLMLEVLYQKKTRLEADSIAAQNQILKEFLQHARRRKQEQLDKLMG
EVSVLDQDMQRVQEMMSSHQSKYQHTGLDMSRVLNGHDPPSQATSSDTSSSSLVPVKTEG
RTDSPSEGFNVSKNVSRYHWLNSTLASRRTRLDQHFDDLEKCYFSIRLKEFGQTETHSTD
SLCEFTDSLTKFTKYSGFRPLATLSYASDIYNGSSIVSSIEFDRDNEYFAIAGVTKKIKV
FEYGTVIRDAVDIHYPCSEMACNSKISCVCWSSYHKGMLASSDYEGTVTLWDAFNATKSR
MFQEHEKRCWSVDFNHVDPKLLASGSDDAKVKLWATNMEHSVACLEAKANVCCVKFNPNS
RFHIAFGSADHCVHYYDLRNTRQALNVLKGHRKAVSYAKFVNSQEIVSASTDSQLKLWHV
SQSHCTRTFQGHINEKNFVGLASNGDYVACGSENNSLYVYYKGLSKQLITFKFDTVRSVL
DKEKKEEDANEFVSAVCFKGNSNVVVAANSQGTIKVLEMI
NT seq
1923 nt
NT seq
+upstream
nt +downstream
nt
atggcaggaagaacgccgacgagacggcgactgaagcggccacagcctcctatttacaat
ggtatcatcaacacagacgaggacaagaacaacgacttcgtctgcccaatctgctttgac
atgatagaagaggcacatatgacaaaatgtggccacagtttctgtttcaagtgcatccag
cagagtctagaagaaagcaaccgatgtcccaagtgcaactttgttatagagaagacagat
cagatcttcccaaacttcttattaaatgaattgatcttgaagcatcggcagagactggaa
gaaagaaaaagagtcaagctggatcaacctaatgggatgaagctgacagagttccaggaa
ctattgtctcacgaagatgacaacctggacatcacagatgtcaacctcatgctggaagtc
ctctatcagaagaaaacaagactagaagctgactccatagcagcgcaaaatcaaatatta
aaagaattcctacaacatgcaagaagaagaaaacaagagcaactggataaactgatggga
gaggtctcagtattagaccaggacatgcagagagtacaggaaatgatgtcaagccatcaa
agcaagtaccaacacacaggcctggacatgtccagggtattgaatgggcacgacccacca
tctcaggctacaagctctgacacatccagctcaagcttagtccctgtcaagacagaaggg
agaacagacagtccctcagaaggcttcaatgtcagcaaaaatgtcagcagatatcattgg
ttaaactccaccctggccagtaggaggacgagactggaccagcactttgatgacctggag
aagtgctacttcagcatcagattaaaagagtttggacaaactgagacccactctacagac
agtctgtgtgagtttacagacagcctgaccaagttcaccaagtacagcggcttcagacca
ctggccaccctcagttatgccagcgatatctacaacggatccagtatagtctcaagcatt
gaatttgatagggacaatgaatattttgcaatagcgggggttaccaagaaaataaaggtg
tttgaatatgggacggtaatacgggatgcagtggacatacactacccctgcagtgaaatg
gcatgtaactccaaaatcagttgtgtatgttggagctcctaccacaaaggcatgttggcc
agtagcgactatgaaggtactgtcaccctgtgggatgccttcaatgcaacaaaaagtaga
atgtttcaggaacatgagaagagatgctggagtgttgacttcaaccatgtggaccccaaa
ctcctggcatcagggtctgacgatgccaaagtgaaactctgggcgaccaacatggagcac
tctgtggcttgtctggaggccaaggctaacgtgtgctgcgtcaagttcaaccctaacagc
aggttccacatagcctttgggtctgcagatcactgtgtgcattactatgacctgaggaac
accaggcaagccctgaacgtgctgaagggacatcggaaggctgtgtcatatgccaagttt
gtcaactcacaagaaattgtttctgcctccacagacagccagttaaagctgtggcacgtc
agccagtcccactgcacacgcaccttccagggacacattaacgaaaagaactttgtcggc
ctggcgtccaacggggactacgttgcatgtgggagtgagaacaactccttatatgtgtac
tacaaaggcttgtccaaacaactcatcaccttcaaatttgacactgtcagaagtgtgttg
gacaaagagaagaaggaagaagatgccaatgaatttgtcagtgctgtgtgcttcaaaggg
aattctaatgttgtcgttgctgccaatagtcagggtacaatcaaagtgctggagatgata
tag
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integrated database retrieval system
