Branchiostoma floridae (Florida lancelet): 118422572
Help
Entry
118422572 CDS
T01074
Name
(RefSeq) pinin-like
KO
K13114
pinin
Organism
bfo
Branchiostoma floridae (Florida lancelet)
Pathway
bfo03013
Nucleocytoplasmic transport
bfo03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
bfo00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
118422572
03015 mRNA surveillance pathway
118422572
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bfo03019
]
118422572
03041 Spliceosome [BR:
bfo03041
]
118422572
Messenger RNA biogenesis [BR:
bfo03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
118422572
Spliceosome [BR:
bfo03041
]
Complex C
Other components
EJC/TREX
118422572
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pinin_SDK_memA
Pinin_SDK_N
Motif
Other DBs
NCBI-GeneID:
118422572
NCBI-ProteinID:
XP_035686099
UniProt:
A0A9J7LQ64
LinkDB
All DBs
Position
1:4297519..4306640
Genome browser
AA seq
506 aa
AA seq
DB search
MAVAVRSLQDQINKAKENLKGVDENIKKLIGRDPSDNRPGAVGGPGRRVSLGGAGPGVGR
GRGAGFRRESEDWGDGPAVKRRGEIGLGARDRRVVTYRGRGRGRGRRDDEDDEDELPHKP
SLASSVIPTPTAKMTRKDSIDQLNKDEQSKKRNRRMFGMLMGTLQRFRTEEVSKQQQDKE
RRRSEIDKKLDEKVEEEKKAAAAERQVLFKERRAKQAELRKLEYKLELAQLQEEWDRHNA
HLMQFIQVKASPALFWCPKKHSKETLQLLMESQDRLKKVFDKRRKDLEEEISVMEVTAES
GKSEGGAEAGEGGQQGKGEVLNVQDMDDLPEDTGIEIGEEEVMDTGGKDDGKEQVDDGKK
EVHDGKSKGDEEEEKQGRTRRESESGRDKGRRRDSERDRKRSRSGPESERKRSQSGGEME
KEKEKEKDSSETAAEAGQDTSGQAVEPEAEGEGQNTEGEAVVVRPDTSEEPMATEAATEP
EGAEKEKEKTEDWPMGSGEGDWEMVE
NT seq
1521 nt
NT seq
+upstream
nt +downstream
nt
atggcggtggcagtgagatctctgcaagatcaaatcaataaagccaaggaaaacctaaaa
ggcgttgatgaaaacattaaaaagttgatcggtagagaccccagcgataacaggcctggt
gctgtgggcggcccgggaaggagagtatcgctgggaggagctggtcctggagtcggccgc
ggccgtggagcgggtttcaggcgtgagtcggaggactggggtgatgggcctgcggtaaag
agacgaggagagatcggactgggcgctagggacaggcgggtggtgacctaccgagggcgc
ggccggggcagaggacggagggacgacgaggatgatgaagacgaacttcctcacaagccg
tccctagcgtcctcagtgatccccaccccaaccgccaaaatgacccgtaaggactccata
gaccagctgaacaaggacgagcagagcaagaagaggaacagacggatgtttgggatgctg
atggggacgctgcagaggttccgcacagaggaggtgtccaaacagcagcaggacaaggag
cgtcgccgctcagagatagacaagaagctggatgagaaagtggaggaggagaagaaggct
gcggctgctgagagacaggtgctgttcaaggagcggcgagcgaaacaggcggaactcagg
aagctggagtacaagttggaactggcacagctgcaggaggagtgggaccggcacaacgcc
cacctgatgcagttcatccaggtcaaggccagtcctgccctcttctggtgtcccaagaag
cacagcaaggaaaccttacagctcctcatggagtcacaggataggttaaaaaaggtattt
gataagcgtaggaaagatctggaggaggagatcagtgtcatggaggtaaccgctgagtca
ggtaaaagtgaggggggtgcagaagcaggggaggggggtcagcaggggaagggggaggtc
ctaaacgtgcaggacatggacgacctgcccgaggataccgggatagagatcggggaagag
gaggtgatggacacaggtgggaaggatgatgggaaagaacaggtggatgatgggaagaag
gaggtgcatgatgggaagagtaagggtgatgaggaggaggagaagcaggggaggactcgg
agagagtcggagtcaggcagggacaaggggaggcggagggactcggagagggaccggaag
cggtctaggtccggtcctgagtcagagaggaagcggtcccagtcggggggtgagatggag
aaggagaaagagaaagagaaggatagctcagagacagcagcggaggctgggcaggacaca
agtgggcaggctgtagagcctgaggctgagggggaagggcagaacacagagggggaagca
gtggtggtgagacctgacacttcagaggaacccatggccacggaagcagcaacagagcct
gagggtgcagaaaaggaaaaagagaagactgaggactggcccatgggctcaggggagggg
gactgggaaatggtggagtaa
DBGET
integrated database retrieval system
