Branchiostoma floridae (Florida lancelet): 118423655
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Entry
118423655 CDS
T01074
Name
(RefSeq) pre-mRNA-processing factor 17-like
KO
K12816
pre-mRNA-processing factor 17
Organism
bfo
Branchiostoma floridae (Florida lancelet)
Pathway
bfo03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bfo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
118423655
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
bfo03041
]
118423655
Spliceosome [BR:
bfo03041
]
Complex C
Other components
Step II factors
118423655
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
EIF3I
WD40_CDC20-Fz
WDR55
Beta-prop_EML_2
WD40_WDHD1_1st
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_TEP1_2nd
Beta-prop_EML
Beta-prop_RIG_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_EIPR1
ANAPC4_WD40
WD40_RFWD3
Beta-prop_IFT122_1st
Beta-prop_TEP1_C
WD40_MABP1-WDR62_1st
Beta-prop_DCAF4
Beta-prop_SCAP
WDR90_beta-prop_4th
Beta-prop_WDR75_1st
Beta-prop_SPT8
Beta-prop_Vps41
Beta-prop_IFT140_1st
WD_LRWD1
RRP7
Motif
Other DBs
NCBI-GeneID:
118423655
NCBI-ProteinID:
XP_035687783
UniProt:
A0A9J7LSD8
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Position
9:complement(12876573..12890011)
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AA seq
582 aa
AA seq
DB search
MAAISALQAYGSDSENSDNESDSETVQAAKPDDIAHLKPLEDGRKLSALKTVAKINAAPD
VITKDDVNLVKPVDLGTTKEVAYNPTYDQLFAPQIGPVNPFKTQQDSAHKNTLSGFVEEA
HVNDFTFEVQRRTFHSYGYAVDPSHDSAGIQTQIIGDKEAAEVNKSVTVFEAKKARPSDK
RKRVRATEPEDIEGFQGPWGGYVDEQTVAKPSEEEQKELDEIIAKRQKKGKKEEEKSAEE
KTQLHVKDMYDYQGRSYLHPPQDVEVNLRSEEPPEKCFIPKKHIHSWSGHSKGISCIRLF
PKSGHLLLSSSMDSKIKIWEVYNKRSMVRTYIGHKHAVRDVCFNNDGTQFLSAAYDRYIK
LWDTETGACISRFTNRKVPYCVKFNPDEDKQHIFVAGMSDKKIVQWDTRSGEIVQEYDRH
LGAVNTITFVDENRRFVTTSDDKSLRVWEWDIPVDFKYIAEPGMHSMPAVTLSPNGKWLG
CQSMDNKIVIYGAHNRFRLNRKKEFKGHMVAGYACQMDFSPDMSYVVSGDADGKLFIWDW
KSTKLYSKIKAHDGVCISCVWLPHETSKVITAGWDGLIKLWD
NT seq
1749 nt
NT seq
+upstream
nt +downstream
nt
atggcggccatttcagctttgcaggcgtacggatctgactccgagaattcggacaacgaa
agcgactcagaaacagttcaggcagcaaaacccgacgatattgctcatctcaaacccctt
gaggacgggagaaaactctcagccctgaaaaccgtggcgaagatcaatgctgcgcccgac
gtcatcacgaaggatgatgtaaatcttgtgaaacctgtagacttgggtacaaccaaggag
gtggcctataaccctacctacgaccaactgtttgccccacagattggtccagtcaatccc
ttcaagacccagcaggattcagcacacaagaacacactgtcagggtttgtggaggaggct
cacgtcaacgatttcacatttgaagtacagagaagaaccttccatagctatggctatgca
gtggacccatcacatgactcagctggcatccagacacaaatcattggggacaaagaagca
gcagaggtcaataagtctgtgacagtatttgaagccaagaaagcccgaccctcagacaag
agaaagcgagtgcgtgctactgaacctgaggacattgaagggttccaggggccatgggga
gggtatgtggatgagcagactgtagccaagccttcagaggaagagcagaaggagctggat
gagatcattgctaagcgacagaagaagggaaagaaagaagaggagaagtctgcagaggag
aagacacagctgcatgtgaaggacatgtacgactatcagggtcggtcgtacctccacccg
ccacaggatgtggaggtcaatctgcggtccgaggagccgccagaaaaatgcttcatccca
aagaagcacatccactcctggtcaggccacagcaagggcatatcctgcatcaggctcttc
cccaagtctgggcacttgctcttgtcttcatctatggatagtaagataaagatttgggaa
gtctacaacaagagaagtatggtccgtacatatattggtcacaagcatgcagtcagagac
gtgtgttttaacaatgacgggacccagttcctgtcagctgcctacgacaggtacatcaaa
ctgtgggacactgagacaggagcgtgcatatcccgttttaccaaccgtaaggtgccgtac
tgtgtcaagttcaaccctgatgaagacaagcagcacatctttgtggcaggaatgtcggac
aagaagattgtacagtgggacacgaggtcaggggagatagtacaggagtatgacagacat
ctgggtgcggtcaacaccatcacatttgtggacgagaaccgaagattcgtgaccacttct
gacgacaagagtcttagagtctgggaatgggacatccctgttgacttcaagtacattgct
gaaccagggatgcattccatgccagctgtcaccctgtctcctaatggcaagtggctgggt
tgccagtccatggacaacaagatagtgatctacggagcccacaaccgcttcaggctcaac
aggaagaaagagttcaaaggtcacatggtagcaggttatgcttgtcagatggacttctct
cccgacatgagctatgtggtgtctggtgacgcggatggaaagctgtttatctgggactgg
aagtccaccaagttgtacagtaagatcaaggcccatgacggagtgtgtatctcctgtgtc
tggctgcctcacgagacttccaaggtcatcactgcaggctgggacggactcatcaagctc
tgggactag
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