Branchiostoma floridae (Florida lancelet): 118424022
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Entry
118424022 CDS
T01074
Name
(RefSeq) general transcription and DNA repair factor IIH helicase subunit XPB-like
KO
K10843
DNA excision repair protein ERCC-3 [EC:
5.6.2.4
]
Organism
bfo
Branchiostoma floridae (Florida lancelet)
Pathway
bfo03022
Basal transcription factors
bfo03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bfo00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
118424022
09124 Replication and repair
03420 Nucleotide excision repair
118424022
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bfo03021
]
118424022
03400 DNA repair and recombination proteins [BR:
bfo03400
]
118424022
Enzymes [BR:
bfo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
118424022
Transcription machinery [BR:
bfo03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
118424022
DNA repair and recombination proteins [BR:
bfo03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
118424022
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ERCC3_RAD25_C
Helicase_C_3
ResIII
Helicase_C
DEAD
SNF2-rel_dom
Ribosomal_60s
Motif
Other DBs
NCBI-GeneID:
118424022
NCBI-ProteinID:
XP_035688334
UniProt:
C3YBY7
LinkDB
All DBs
Position
10:complement(9130269..9144629)
Genome browser
AA seq
798 aa
AA seq
DB search
MGKRDKSGKESGKRSKKRKHQSDSEDDYEDSRDSELNGGGAEVAAIATRQTDESTGDTDE
YGAKDYRKIMELKSDHASRPLWVAPNGHIFLEAFSPVYKHAHDFLIAISEPVCRPEHIHE
YKLTAYSLYAAVSVGLQTNDIIEYLKRLSKTTVPSGIEEFIKLCTVSYGKVKLVLKHNRY
FVESSFPDVLQTLLKDSGIQDCRLRHSIEEGVENVEDDLIVGQLSGKSAFQVKKPPQAGQ
NGANSAPAPGEDGEKEKEKEESAVPEDIFDYYEKIDREDEEAEEQQILSFEVNPDKLENL
QKRCIEMEYPLLAEYDFRNDTRNPDIPIDLKPNTILRPYQEKSLRKMFGNGRARSGVIVL
PCGAGKTLVGVTAACTVRKRCIVLCTSAVSVEQWKSQFKLWANIDDSTICRFTADAKDKP
IGCNVAISTYSMIAHTTKRSYESEKVMEWLQSQEWGLMLLDEVHTIPAKQFRRVLMVIQA
HCKLGLTATLVREDDKIADLNFLIGPKLYEANWMELQNNNFIARVQCAEVWCPMTPEFYR
EYLAIQTKKRTLLYTMNPNKFRACQFLVRFHERRNDKVIVFSDNVFALKEYAKRMGKPFI
YGPTSQGERMHVLQNFQHNPKVNTIFISKVGDTSFDLPEANVLIQVSSHGGSRRQEAQRL
GRILRAKKGSVAEEYNAFFYTLVSQDTMEMTYSQKRQSFLINQGYSFKVITKLAGMDEED
LAFSNKKEQRELLQRVLAASDADAEEEVVPGESKGSGQVTRKVGSMASMSGADDTIYMEY
KTGPRRTHTHPLFKKFRT
NT seq
2397 nt
NT seq
+upstream
nt +downstream
nt
atggggaaaagagacaagtccggtaaagagtctggaaaaaggtccaagaagcggaagcac
cagtcagattctgaggatgattatgaagactctcgggactcggagctgaatggagggggt
gctgaggtggctgccatagcaaccagacagacagatgagagtacaggagacacagatgag
tacggggccaaggactacaggaaaatcatggagctgaagtcagaccatgcctccaggcca
ctctgggtggccccaaatggacacatttttctggaggcattctctcctgtatacaaacat
gcacatgacttccttatagccatctctgagcctgtgtgcaggccagaacacattcatgag
tacaaactgacagcctactccctgtatgccgccgtctctgtggggctccagactaatgac
atcatcgagtacctgaaacgtctcagtaaaacaacagtgccatctgggattgaggagttc
atcaagctctgtacagtcagctatgggaaggtgaagctggtgttgaaacacaacagatac
tttgtggagagctcctttcctgatgttctacagacattactgaaggacagtggtatccag
gactgccgactgagacactccatagaggagggtgtggagaatgtggaggatgatcttatc
gttggacaactgtcaggcaagtctgcttttcaggtgaagaagcccccccaggcaggccag
aatggtgccaacagtgcccctgccccaggggaggatggggagaaggagaaggagaaggag
gagtctgcggtacccgaggacatctttgactactatgagaagattgacagggaagatgag
gaggcagaggagcagcagatcctctccttcgaagtcaatcctgataagttggagaaccta
cagaaaagatgtatagagatggaatacccactgctagcagagtatgactttaggaacgac
acacgtaacccagacatccccatagacctgaagcccaacaccatactcaggccctatcag
gaaaagagtctgcggaaaatgtttggtaatggcagagcaaggtcaggagtcatcgtgctc
ccatgtggtgctgggaagacccttgttggcgtgacagcagcttgcactgtgagaaagcgt
tgcatcgtgctgtgtacatctgctgtatccgtggagcagtggaagtctcagttcaaattg
tgggcaaacattgatgacagtaccatctgtaggttcactgcagatgccaaggacaagccc
ataggttgtaatgttgccatcagtacctactcgatgattgcacacacgacaaagcgctcg
tacgagtctgagaaagtcatggagtggttacagagccaggagtggggcctgatgttactg
gatgaggtgcacaccatcccagccaaacagttccgtcgggtactgatggtcatccaggcc
cactgcaagctgggattgacggcgaccttggttcgagaagacgacaagattgctgaccta
aacttcttgattggtccaaagctttacgaagccaactggatggagctacagaataacaac
ttcatcgcacgtgtgcagtgtgctgaggtgtggtgccctatgacccctgagttctaccgt
gaatatctagccatccagaccaagaaacgcaccctgctgtacaccatgaacccaaacaag
ttccgcgcttgccagttcttagtacggtttcacgagagacgaaatgacaaggttatagtt
ttctccgacaatgtctttgctctgaaggagtatgccaagcggatgggcaaaccgttcatc
tacggccccacctcccagggagagaggatgcatgttctacagaacttccaacacaaccct
aaagtcaacactatcttcatctcaaaggttggtgatacatcctttgatctgcctgaggca
aatgtccttatccaagtgtcctcccacggggggtcacgccgacaggaggcacagcggctg
ggaagaatccttcgagccaagaaagggtccgtagcagaagagtataatgcctttttctac
actctggtgtcccaggacaccatggagatgacctactctcagaagagacaaagtttcctc
atcaaccaaggttacagcttcaaggtcatcaccaaactggctggcatggacgaggaggac
ctagccttcagcaataagaaggaacagagggagctgttacagcgagtcttggctgcttca
gatgcagatgctgaggaggaggtggtaccaggagagtccaaggggtcaggacaggtaaca
cggaaagttggcagcatggcgtccatgtcaggagcagacgacaccatctacatggagtac
aagactgggcccaggaggacacacactcatcccctgtttaaaaagttccgcacttga
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