Branchiostoma floridae (Florida lancelet): 118425253
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Entry
118425253 CDS
T01074
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit-like isoform X1
KO
K07466
replication factor A1
Organism
bfo
Branchiostoma floridae (Florida lancelet)
Pathway
bfo03030
DNA replication
bfo03420
Nucleotide excision repair
bfo03430
Mismatch repair
bfo03440
Homologous recombination
bfo03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
bfo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
118425253
03420 Nucleotide excision repair
118425253
03430 Mismatch repair
118425253
03440 Homologous recombination
118425253
03460 Fanconi anemia pathway
118425253
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
bfo03000
]
118425253
03032 DNA replication proteins [BR:
bfo03032
]
118425253
03400 DNA repair and recombination proteins [BR:
bfo03400
]
118425253
Transcription factors [BR:
bfo03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
118425253
DNA replication proteins [BR:
bfo03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
118425253
DNA repair and recombination proteins [BR:
bfo03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
118425253
MMR (mismatch excision repair)
118425253
DSBR (double strand breaks repair)
HR (homologous recombination)
118425253
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
DUF223
HMG_CoA_synt_N
IBR
BRC-2_C
Motif
Other DBs
NCBI-GeneID:
118425253
NCBI-ProteinID:
XP_035689920
UniProt:
A0A9J7LYP2
LinkDB
All DBs
Position
11:complement(14612547..14628378)
Genome browser
AA seq
635 aa
AA seq
DB search
MAFNLHEGSIQEIANGGSPKAPVLQVLGIKKIQSAGAQGSERYRLLLSDGKHTQSSAMLA
TQQNSLVHSQKLQQNCVIRLEKYICNTIQDNRRVLIMLEVQVLGNPGNKIKNPTPVNQTG
GGTAPAPVQNAFGSSNFGHGRRPLTSVPQPSFYRGGAAHAVNGGMNRSGNPGAGARPNQG
AAGSSFYGRSNVTASPGTPGRGKPTPIAGLNPYQNRWTIRARVTNKGSIRTWNNARGEGK
LFSMDLLDESGEIRATAFNDQCDKFYDLIEIGKVYFFSKGSLKTANKQYTSIQNDYEMSF
NNDTTVVLCEDEADLPSIQYNFVPIEKLEEMNPNTIIDLIGVCKSYGEVTTITTRQTNRE
VNKRDLQVVDMSGKQVNLTLWGGEADKFDGSSSPVVAIKGARLSDFGGRSLSTVGSSTIM
INPDIPEAYQLRGWYDKVGCNAEAQSISTGAGGGAGRPTNWKSFQQVKDENLGTGEKPDF
FTTKGTIVFLKKENSMYQACPTQDCNKKVVDLQNGFFSCEKCSKEFPNFKYRMILSANVA
DFSGNQWTTCFQETAETILGQNTEYLGNLKDQDDTAYDQVFTEANFKSYIFNMRVKMDTY
NDESRIRCICNGIQPLDFKEYSKKLINDIRQMALM
NT seq
1908 nt
NT seq
+upstream
nt +downstream
nt
atggcgtttaacctacacgaaggatccatacaggaaattgcgaatggaggaagcccaaaa
gcaccagtcctgcaagtcctgggaatcaagaagatacagagtgcaggagcacaagggtcc
gagagataccgcctactgctgtcagatggaaaacacacccagtcctctgccatgctggcc
acccagcagaacagcctggtgcattctcagaagcttcagcagaactgtgtgatccgactg
gagaagtacatctgtaacaccatccaggacaacaggcgtgtcctgatcatgctggaggtc
caggttctcggcaaccctgggaacaagatcaagaaccccacacctgtcaatcaaactgga
ggtggcactgccccagctcctgtgcagaatgcattcggcagctccaattttgggcatggc
cgtcgacctctgacctctgtcccacaaccctccttctacagaggaggagccgctcacgcg
gtaaatggcgggatgaatcgctcagggaacccgggagctggcgcacggcccaaccagggt
gccgcggggtcttccttctacggtcgcagtaacgtcacagcctctccaggcacccctggt
aggggcaagcctacacctattgcaggcctgaacccctatcagaacaggtggacaatccgt
gcccgtgtgacaaacaagggcagtatccggacctggaacaacgcccgcggggaggggaag
ctgttctccatggaccttctggacgagtcgggtgagattcgagccacagccttcaacgac
cagtgtgacaagttctatgacctgatcgaaataggcaaggtgtacttcttcagcaagggg
agtcttaagacagccaacaagcagtacacatccatccagaatgactacgagatgtccttc
aacaatgacaccaccgtggtactgtgtgaggatgaggcagacctcccctccatccagtac
aactttgttcccatagagaagctggaggaaatgaatccaaacactatcattgacctgatt
ggtgtctgtaagagctacggagaagtgacgacgatcacgacgcgacagacaaacagggag
gtgaacaagcgcgacttacaggtcgtggacatgtcgggcaaacaggtcaacctgacactt
tggggaggcgaggccgataagtttgatgggtcctcgtccccagtcgtcgccatcaagggc
gcccgtttgtcggacttcggcggacgttccctcagcaccgtgggttccagcacaatcatg
atcaacccagacattcctgaggcctaccagctccgagggtggtatgacaaggtgggctgt
aacgcagaggcacagtccatttccaccggggcagggggaggggcaggacgtcccaccaac
tggaagagcttccagcaggtgaaggatgagaacctgggtacaggggagaagcctgacttc
ttcactaccaagggaaccattgtctttctgaagaaggagaactccatgtaccaggcctgc
cctacacaggattgtaacaagaaggtggtggacctacagaatggctttttcagctgtgag
aagtgcagcaaagagttccccaacttcaagtacaggatgatccttagtgctaacgttgca
gactttagtggcaaccaatggacaacatgcttccaagaaacagcagaaaccatcctggga
cagaacacagaatacctgggcaacttgaaggatcaggacgacacagcctatgatcaggtc
ttcactgaggcgaacttcaagtcgtacattttcaacatgagggtcaagatggacacatac
aatgacgagtctcgtatccggtgcatctgtaacggcattcagccattggacttcaaggag
tacagcaagaaactcatcaatgacatcaggcagatggcactgatgtaa
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