Branchiostoma floridae (Florida lancelet): 118425715
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Entry
118425715 CDS
T01074
Name
(RefSeq) vam6/Vps39-like protein isoform X1
KO
K20183
Vam6/Vps39-like protein vacuolar protein sorting-associated protein 39
Organism
bfo
Branchiostoma floridae (Florida lancelet)
Pathway
bfo04140
Autophagy - animal
bfo04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
bfo00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
118425715
04148 Efferocytosis
118425715
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
bfo04131
]
118425715
Membrane trafficking [BR:
bfo04131
]
Endosome - Lysosome transport
Tethering complex
Hops complex
118425715
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Vps39_2
Vps39_1
CNH
Clathrin
WD40_like
Motif
Other DBs
NCBI-GeneID:
118425715
NCBI-ProteinID:
XP_035690659
UniProt:
A0A9J7LZP6
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Position
1:25246719..25308304
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AA seq
879 aa
AA seq
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MHDAYEAAPILEKLPLQIESIACWADKLLVGTKQGHLLLYSIKTESGSTRHEVSLERSNK
SFSKKPIVQLRVVSELKILISLSDNVVSVHDITTFQCITTIQKTRGATLFSTDLQQHKSL
SGDLSHTLRMAVAVKRKIQNYYWKNRDFHELTPDMAVPDVAKSMAWCKDSVCVGFKRDYF
LIKVDGSGTLKELFPTGKQLEPLVTRLSEDRLALGRDDMTIFIDSEGQPTQKYALTWSDI
PVVLDHEPPYIIAVLPRHIEVRTVEPRLLVQTMELPSRPRFICSGSSHVYVASQNYVWKM
VPVPITAQIKQLLQDKQFELALHLANMTDEVEADKQQNIHHIQNLYAFDLFSQRRFDESL
KIFSKLDTDPAQVIGLYPDLLPHDFRAQLAYPSSPPDLSGSELEKGLLALIDYLTQKRND
LMKYMSQELGNPTAIVEGSSTIRSKKQLSQIIDTTLMKCYLQTNDALVAPLLRLKDNNCH
VEESERVLKKHQKYSELIILYEKKGLHRKALDLLLRQSGKPNSPLKGHDRTVQYLQRLGP
NHLELIFDFALWVLKAHPEDGLKIFTEDMPEVEALPRDKILKYLEENVKDLAIPYLEHII
LNCEDGTPEFHNKLVNLYREKVQDQLKEYINSLPEGQLPSPAGREPGELGEIRSKLLYFL
ETSLDYVPEKLLTYFPFDGFFEERALLLGRLGRHEQAIAIYTHVLTDNWMALEYCARNYD
RHKEGNKDVYVYLLRMYLSPPDPHNLGVMSGAVNPQPNVQAALDILMEHSSKIDTAKALA
MLPSGTQIKDICSFLENVLEEKAMQKRNMQVLKSLLYAEHLQVQEQRMFYQSSKCIITEE
KMCRVCKKKIGNSAFARYPNGVIVHYFCCKDRNVCPVDS
NT seq
2640 nt
NT seq
+upstream
nt +downstream
nt
atgcacgacgcttacgaagctgcacccattctcgagaagctgcccctacagatcgaatct
atcgcctgttgggccgataaattactggttggcaccaagcaggggcatctgctactttac
agtatcaagacagagtcaggttcaacgagacatgaagtcagcttggaaaggtccaacaag
tctttttccaagaaaccaatagttcagctgcgtgtggtttctgagctgaagatattgata
agtttgtcagacaatgtagtgagtgtacacgatatcaccaccttccaatgtatcaccacc
atccagaagacaaggggagccactctgttctccacagatctacagcaacacaagtcctta
agcggagacttgtcgcatacattgaggatggcggtcgctgtgaagaggaagatacagaac
tactactggaagaacagggattttcacgaactcacacctgacatggcagtacctgatgtt
gccaagtccatggcttggtgtaaggactcggtctgtgtgggcttcaaaagggactacttc
ctcatcaaggtggatggtagtgggacactgaaggaactgttccccacgggaaaacagttg
gaaccactggtgactaggctgtcggaggaccggctggcgctaggtcgggacgacatgacc
atcttcattgactctgagggccagccaacgcagaagtacgccctgacgtggtcggacatc
ccagttgttttagatcatgagccaccctacatcattgcagtactacccaggcacatcgaa
gtgcgaactgtggagcccagacttctggtccagactatggagttacccagcagaccaagg
ttcatctgcagtggaagcagtcatgtttatgtagcctctcagaactatgtctggaagatg
gtacctgttcccatcacagcgcagatcaaacagctcttacaagacaagcagttcgaactg
gctctgcatcttgctaacatgacagacgaagtggaggcagacaaacaacagaacatccac
cacattcagaacctgtacgccttcgacctcttctcacagaggaggtttgacgagtccctc
aagatcttctccaagctggatacagacccagcccaagtgatcggcctgtaccctgacctc
ctgccccatgatttccgtgcacagctggcctacccctccagccctccggatctgtccggt
tctgaactggagaagggactcctcgcactcatcgactaccttacacagaagagaaacgac
ctcatgaagtacatgagtcaagaactggggaacccaactgccattgtggaaggaagttca
acaattcgttccaagaagcaactaagtcaaattattgataccacactgatgaaatgttac
cttcagaccaacgatgctctggtagcccccttactcagactgaaagacaacaactgccat
gtagaagaaagtgagagagtgctcaagaaacatcagaagtacagtgaactcattatcctg
tatgagaagaagggactccacagaaaagccttggacttgttactgagacagtctggcaag
cccaattcccccctgaagggacatgacagaacagtgcaatatctacagagactaggtccc
aaccacttggaattgatatttgattttgccctgtgggttttgaaggcacatcctgaagat
ggattaaagattttcacagaagacatgccagaagtggaggcacttcccagagacaagata
ctgaagtatcttgaagaaaatgtcaaggatcttgctatcccatacctggaacacattatc
ttaaactgtgaggatgggacaccagagttccacaacaagctggtgaacctgtacagagaa
aaggtgcaggaccagctgaaagaatacatcaattcactaccagaaggccagctaccgtcc
cctgctggtagggaacctggcgagcttggtgaaatccgatccaagctcctctactttttg
gaaacatctctggactacgttcccgagaaacttctcacctatttcccatttgatgggttt
tttgaagagcgagctcttctattgggtagactgggtcgtcatgaacaagccattgccatc
tacacacatgtactgactgacaactggatggctctggagtactgtgcaaggaattatgac
agacacaaagagggcaataaggatgtttatgtgtatctactgcgcatgtacctgagtccc
cctgacccacacaacctgggggtcatgtctggagcggtcaacccccagccgaacgtccag
gctgcactggacattctgatggagcattccagcaagatagacactgctaaggcgttggcc
atgctgccctcgggtactcagattaaagacatctgcagttttcttgagaacgttcttgag
gagaaggccatgcagaagaggaacatgcaggtgttgaagagtctactgtatgccgaacac
ttacaggttcaggaacagcggatgttctaccagagcagcaagtgcatcatcacagaggag
aagatgtgcagagtctgcaagaagaaaattggaaacagtgcttttgccaggtaccccaat
ggggtgattgtgcactacttctgctgtaaagatagaaacgtctgccctgtggacagctag
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