Branchiostoma floridae (Florida lancelet): 118425952
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Entry
118425952 CDS
T01074
Name
(RefSeq) THO complex subunit 6 homolog
KO
K13175
THO complex subunit 6
Organism
bfo
Branchiostoma floridae (Florida lancelet)
Pathway
bfo03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
bfo00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
118425952
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bfo03019
]
118425952
03041 Spliceosome [BR:
bfo03041
]
118425952
Messenger RNA biogenesis [BR:
bfo03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
118425952
Spliceosome [BR:
bfo03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
118425952
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_WDHD1_1st
WD40_Prp19
Beta-prop_TEP1_2nd
WD40_CDC20-Fz
WDR55
Beta-prop_EML
Beta-prop_EML_2
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_CAF1B_HIR1
WDR54
Beta-prop_TEP1_C
Beta-prop_IP5PC_F
Beta-prop_WDR75_1st
EIF3I
Beta-prop_SPT8
Beta-prop_DCAF4
Beta-prop_EIPR1
Beta-prop_RIG_2nd
Beta-prop_SCAP
PQQ_3
Beta-prop_IFT140_1st
Beta-prop_IFT122_1st
NBCH_WD40
Beta-prop_NWD2_C
Beta-prop_Vps41
SGL
WD40_CFAP43
Beta-prop_NOL10_N
Motif
Other DBs
NCBI-GeneID:
118425952
NCBI-ProteinID:
XP_035691015
UniProt:
A0A9J7M0T0
LinkDB
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Position
11:complement(16149771..16198428)
Genome browser
AA seq
336 aa
AA seq
DB search
MADNFETEMLTQRRQLYTTVFSQSFSPCGRFVAVCDNFGRITIFSLAASLSADAKEDSRK
PVFTFQAHNGPVYTLSSTERFLISAGTGDIKAWSWADILKKSPKVQWSLSHPFNHSFDNP
ETNSIVITKDGTLCSGCGDNNVYLWDLQTGTCTNTLKGHTDYIHALTLRGNDQQVVSAGE
DGSVRIWDLRDSREAAHILEPYKHDVCARPDQGRWIGCVAVDSGDYLLVCGGGPSLSLWH
LRSMTPVVAFPTPNSCQNVVMFHEDQIMSAGSSPCVNHWSINGELRSQVPCTPPCLYSLA
INTNSASYKVLSAAGSSSKVDIFTNFGYKAFSMLVC
NT seq
1011 nt
NT seq
+upstream
nt +downstream
nt
atggcggacaattttgagacagagatgctgacccagcgcagacagctgtacaccacagtt
ttctcccagtccttctctccctgtggacgctttgtggctgtgtgtgacaactttgggagg
atcaccattttcagtcttgcagcctccttgagtgcagatgcaaaagaagacagccgcaaa
ccagtgtttaccttccaagctcacaatggcccagtgtacaccctgtcttctactgaacgt
tttcttatcagtgctggtactggtgacatcaaagcgtggagctgggctgacatcttgaaa
aagagcccaaaagtgcagtggtccctgtcacatccattcaaccacagctttgataaccca
gaaacaaatagcatagtgataacaaaggatgggactctgtgctcaggatgtggagacaat
aatgtgtatctgtgggatctacaaacaggaacatgcacgaacacacttaaaggccacaca
gactacatccatgctcttaccctgaggggcaatgaccagcaagtggtgtctgctggggaa
gatgggtccgtcaggatatgggatttgcgagattccagagaagcagcccatatattagag
ccttacaaacatgatgtgtgtgccagaccagaccagggcaggtggatcgggtgtgtagct
gtggacagtggggattacctcctggtatgtggaggaggaccatccctgtccctatggcac
ctgaggtcgatgaccccagtggtggccttccccacccccaactcttgtcagaacgtggtg
atgtttcatgaagaccagatcatgtctgcagggtcctccccctgtgtgaaccactggagt
atcaatggtgagctgagatctcaggtcccctgtacacctccctgtctctacagtctggcc
atcaacaccaactctgccagctataaggttctatctgcagcaggcagcagttccaaggtg
gacatcttcaccaactttgggtacaaggctttctccatgctggtgtgctga
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integrated database retrieval system
