Branchiostoma floridae (Florida lancelet): 118426133
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Entry
118426133 CDS
T01074
Name
(RefSeq) THO complex subunit 5 homolog
KO
K13174
THO complex subunit 5
Organism
bfo
Branchiostoma floridae (Florida lancelet)
Pathway
bfo03013
Nucleocytoplasmic transport
bfo03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bfo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
118426133
09122 Translation
03013 Nucleocytoplasmic transport
118426133
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bfo03019
]
118426133
03041 Spliceosome [BR:
bfo03041
]
118426133
Messenger RNA biogenesis [BR:
bfo03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
118426133
Spliceosome [BR:
bfo03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
118426133
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FmiP_Thoc5
Motif
Other DBs
NCBI-GeneID:
118426133
NCBI-ProteinID:
XP_035691286
UniProt:
A0A9J7LYD4
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All DBs
Position
11:3600938..3615701
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AA seq
673 aa
AA seq
DB search
MASSAGKKRPMVRVSRTDSSSNLTDKDSKKPKMDSGDRQGEPASLTSEEEEAAQRDPARD
VNLYKTACDGIRQLLQEIQEIRGSGRKDAAAEIAERKIQASMHFITLKKLNRLAHMRCKK
ARDTTHEHKQKVDSYHLQLQNLLYEVMHLQKEITKCLEFKSKDEEIELVEEAEFYKEAPE
EISKPDVTQQDPHQLTLARLDWELEQRKRLAAKCKDYEDQKEEISQEIQTRRDQLDSLLP
RLNTVLESTKPLQEALKMPFDEVRQQHRMAQFLPRPLYVLYVQSSAYQQACDPALTVTIE
GDLDAAKSSGPSTSAALDVDSDSDDEEGTKEKSRRRRTISVDPTDRRGKVLHKHPLQVNI
TIKCKDGSTLALTFHYLLTLQVVTVIVQLQPVAEAITSAVSGGDLLSPSSLLGCLFPGDH
GNTTPNPANQFLLERARIEDFNECVKEVGKPYVWAQQLAGLQFLNTEEVGLHDIVIIITL
RVIWSTERGSVPVTRECQHLFPTKILSRLVSWKSITHDDYIVLPYCQPVVESGMVHDTDN
FYVAVLQRGSATLTAAMLLSPGYLTCPPLFSLNLNMGTDHTASNDENIRAMEHEVNVHYK
ELLVKGSHDQLLTNQLQRLLMCLDVYLETQSNSSATEGPSEFGREKLCPRVVRGPSRCKP
FVFNSQHGFFTQR
NT seq
2022 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcctccgcgggaaagaagcgcccgatggtccgcgtgtctcggacggattcatcc
tccaatctgaccgacaaagactctaagaagccaaagatggattctggagatcgccagggt
gagcctgcttcactaaccagtgaggaggaggaggctgcccagagggacccagccagggac
gtgaacttgtacaagaccgcctgcgacgggatccgccaactcctgcaggagatccaggag
atcaggggcagcggcaggaaggatgctgctgctgagattgcggagagaaaaatccaggcc
agcatgcacttcatcactctcaaaaaactcaacagattggcccacatgcggtgtaagaag
gcccgcgacacgacccacgagcacaagcagaaggtggacagctaccacctgcagctgcag
aacctgctgtacgaggtcatgcacctgcagaaggagatcaccaagtgtctggagttcaaa
tccaaggatgaggagatagagcttgttgaggaagcagagttctacaaggaggccccagag
gagatttctaaacctgatgtgacccagcaggaccctcaccagttgacgctggctcggctg
gactgggagctggagcagcggaagcggctggcggcaaagtgtaaggactacgaggaccag
aaggaggagatctctcaggagatccagactcgccgggaccagctggacagtctgctgccc
agactcaacactgtgctggagtctaccaagcccctccaggaggcgctaaagatgccattt
gacgaggtacgtcagcagcacaggatggcccagttcctacccaggcctctctacgtgctg
tatgtccagtcttcagcctaccaacaagcatgtgatcctgctctgacagtgaccatagag
ggagatctggatgcagcaaagtcctccggaccgtccacctcagctgctctggatgtggac
agtgactctgacgatgaggaggggaccaaggagaagtctcggcgcagacggaccatcagt
gtcgacccgaccgacagacggggcaaagtgctccacaaacatcccctgcaagttaacatc
accatcaagtgtaaagatgggtcaaccctggccctgaccttccactacctgctgaccctg
caagtggtgacggtcattgtccagctccagccggtggcagaggccatcacgtctgccgtt
tcaggaggggatttgctctctccatcttccttacttggctgtctgtttcctggtgaccat
ggcaacaccacgcccaatcctgctaaccagtttctgctggagagggcaaggattgaggac
tttaatgagtgtgtgaaggaggttgggaagccttatgtgtgggcccagcagttagcaggc
ctgcagttcctcaacactgaggaggtaggtcttcatgacattgtcatcattataacttta
agagtaatctggtccacagagagaggctctgtccccgtgaccagggaatgtcagcatctc
ttcccaaccaagattctctcaaggctggtgtcatggaaatctatcacccatgatgactac
atcgttctcccctattgccagcctgttgtggagtcaggaatggttcacgacacggacaac
ttctacgttgctgtgctgcagcgtgggtcagccacactgacagcagccatgttgttgagc
ccgggctacctgacctgtcctcccctcttcagcctcaatctcaacatgggtacagatcac
acagccagcaatgatgaaaacatcagggccatggagcatgaggtcaatgtccattacaaa
gaactactggtcaaggggtcacatgaccagctgttgaccaatcagctgcagcgattgctg
atgtgcttggacgtgtacctggagactcagagcaacagtagtgccacggaaggaccctcg
gagttcggacgggagaagctctgcccaagagtagttaggggtcccagtcgatgtaaacca
tttgtgttcaatagtcaacatgggttcttcactcaacgttga
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