Branchiostoma floridae (Florida lancelet): 118427034
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Entry
118427034 CDS
T01074
Name
(RefSeq) collagen alpha-3(VI) chain-like
KO
K06238
collagen type VI alpha
Organism
bfo
Branchiostoma floridae (Florida lancelet)
Pathway
bfo04512
ECM-receptor interaction
bfo04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
bfo00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
118427034
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
118427034
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
bfo04147
]
118427034
00536 Glycosaminoglycan binding proteins [BR:
bfo00536
]
118427034
Exosome [BR:
bfo04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
118427034
Glycosaminoglycan binding proteins [BR:
bfo00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
118427034
Hyaluronan
Extracellular matrix or blood plasma proteins
118427034
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VWA
VWA_2
VWA_3
vWA_SIBA-E
F5_F8_type_C
EGF
F5_F8_type_C_2
hEGF
EGF_CA
KN17_SH3
EGF_DL_JAG
Motif
Other DBs
NCBI-GeneID:
118427034
NCBI-ProteinID:
XP_035692565
UniProt:
A0A9J7M1X4
LinkDB
All DBs
Position
12:14802244..14837434
Genome browser
AA seq
2558 aa
AA seq
DB search
MMQISAGTSRVWHVSPLARFGAFVYTTAADGSTYAVPAGYHLAPLTVCDQANATAGDGRD
NDCDGLFDEELPNGIDDDMDGTIDEADMALNPCDRNPCSNGVCEQTRGGYQCRCDAGFSG
FSCDISLGGLDGPTWLPSAPGWIAEEDVAWEAPANLTLDGDNTTCWGPGNGTWYLTFNLG
SPHTIFQVRFTDNMPSDYVPKSVTLQANSGRGGNWTEVKTFAIPEMLNGPITFGGFSATG
NLWRLQVSETHSGLYNPQVCELQFFGQEVVTTSYALLPLQQNYTENLVNTQGTTALAVAV
ESNVLNYYSTRRDFQGLYGLQVTNIKPLGAYVAAEVSFMSSASQVMYQEMALQDAVAMGT
VNNIAVINDTGITLTPRVPSCTAQTDLVFGIDGTVSTNTFSAIVAFIRRVVHTFTIGADA
TQVSVIQGGSPSRIDFPLNQYQSLPGLIQGLDAIQQTDTPGEGKTFSNLGAFGQMNGGRT
GVNRLLVLLTDGVTGAEDFQQAAENDVVVFTVAIGEDAELASLEAFSPSSNHVFRVRDSY
GLVDLGNRLPKKLCEVGVTSYMTVTLDVNYTMEFLTAASPGFTALNLAVKTTFLRGLQGV
FGFQAVQVFNLMPGPWYSTRANIRVIAGAYALDAIQQRVFNITAAGQFGSYSFDVATITY
DQIVNQLLYGYIEVRTVFMQSYRDQLSASYRILASSVKLNVLRIFSSLYGVRSMAVTNIK
PGTTATTTWIDFQINCAQTAVPNIVTTYLDVTDSNQMVGTLDILPGSGYLSIEAPRCGVE
LDLVLVLDDSGSVGAGNFNKLKEFVKRLVAQFEFAQDATRIGIIQYSTDVKAVFSLNSYD
TLEDINTAIDGMKYKGGGTNTHLALYDLVNNAFSYQNGARPTASKVAVIITDGMSTQPIT
RAAQEVKTAGIVMYAMGVGSGTDQSELQEIASSSDRVFSASNYDSLLTLTGGLANRFCDD
GSSVTSVATVDLSDDFSVDLLNVTSDTFITLRATVLEQLNFVLGNFSNLILTNINFQPSI
SGKVRVVFTLNSLGYIVNELQIIINQVASTGTFGNLAVTGATFDAQGPAVLYGIVEVNRT
FTSEIRSISSYEAAALSISFTYQLLQSFTTSVNFARVTYISPGYAATTTLVSFVTSVSAN
VSDDILTNFNASVAGTPMFLQGTLSPELPMCPAKMDVVFVLDGSGSVGHDNFQRMKSFVK
RVAGSFAIGPSSAQISLFQYSNFVMQEFALDTYESIGEINQAVDAVMYQGGGTATGLALY
EMRQYGFSFANGGRPGTRRVAILLTDGMSSDTVDKHAMAAWQAGISLYVVGIGSSVDMNE
LLAIGGTPDNVFSLGNFGQLQDLGSRLPNRLCEVGRSMNLILSLDVTSVPCSSMLRQQFM
CLQTALNQAGLSYQNGILSVAPVNLIRPLEYSYVFRLVFFQYARAGIASIVNPATTQLGN
LMVASVNVIDDDSLPLFVMVEVNYTFIPELNQPNSAVFAYWTNVFESKLTGIENITGILS
VIPTAFRPGNTATSLIADVTLIVRQTASIFVQSALVAGFRSGDIEGHPVIGGTVSTTALA
CPVKLDLVFILDSSDSVSVQDFEMMRQFLKKTVGDFNIGYDATQIGLVQYSDEAETIFAL
DSFSSPTSLRDAIETIQYTGGATNTGNALDYMVQYMFASRNGARQDSTKIAIVLTGGASS
DDIKAAAQRMRKSSVITYAIGIGSELDYDQLDYIAGAPTSLTILQASTGLVQLRNTLSRK
LCQVSSSLPYIVNIPVETYNFSIDYLDANTSASLQLYTQLNEAVNLSFTGVSGFIVQLMS
FAPGPYNSVSAICQMYISPYAVTDVTTRFQSFNTLGGPIQINTAQIRVIRERIRPLYLQL
QLVYNFTRDLQLIGSAAFVDLSLQLENVFYLLFAGDQDSIASVSVGQIGPGLTETTITVG
VEFQAFSAAIPSVINVIDNATATGVLGQFEVTDYIIQETAPTCQVQLDLVFVLVGGKSVG
EENFEKQKGFVKKVISDFDIGPQSTQISIIQYAEDAQLEIALDTYSDSESIQRDIDTIRY
VGGYGLTMAGKAIDYAARYGFSPRNGARAGATRVAVLFTYGTPHDDVAGPALNMRKGNVF
IYGVAINSNFDSDRLVSIAGTSRNLRRLADFNGLNELRNTLPTEVCGETTTIFLRLSLNI
TYTVEYQTLGSAYNILVSEIEYKLLNEFSTRTRSAVFLRVTQILPGVQVDLVFVLDGTGS
VGATNFEKMKTFVQKMISDFDLGPEATRIGVVVYSNRASLEISLDAYDDQEALQDAVADI
AYPGGYTLTGAAIDYTTTFAFSTRNGARDGVRKVAVILTDGVSYDDPAEPAQSMRKAAII
TYAVGIGSNLDRDQLDVIAGVPDNLFVLDDFSMLDNLRTTLPTQVCDASTSEQILIRIVI
TSVRFDVSLLNGNSTEFQTLFAQINRAFIGFFPGVPGFTAPLVSLAPGPDDNSVVAMCLG
SVPAFATNTVRTGLLNASEELNNLTLNTALTSVVAARTSVIFVRLAVNATYTVDYQVRGS
AAYNALFAQLQYQVLSQFSPSIGSVDIVSLRVTQILPG
NT seq
7677 nt
NT seq
+upstream
nt +downstream
nt
atgatgcagatatctgcaggcacctccagagtctggcacgtcagtccgctggccagattt
ggagcttttgtctatacaacagcagctgatgggtcaacttatgccgtcccagctggatac
caccttgccccactgaccgtatgtgaccaagccaatgctacagcaggagatgggagggac
aatgactgtgatggtctctttgatgaagagctgcccaatggcattgatgatgacatggat
gggaccattgatgaggccgacatggcacttaatccttgtgatagaaacccttgcagtaat
ggtgtctgtgagcagaccaggggaggttaccagtgccgatgtgatgcagggttctcaggc
ttctcctgtgatatcagccttggtgggctggatggtccaacctggctacccagtgcccca
ggttggattgcagaggaagatgtggcttgggaggctccagcaaaccttactctggatggt
gacaacaccacctgctggggtcctggcaatgggacctggtatctgactttcaacctgggc
agtcctcatactatcttccaggttcgtttcactgataacatgccatcagactacgtcccc
aaatctgtcacactacaagctaacagtggccgaggtggcaactggacagaagtcaagaca
tttgcaataccggaaatgctgaacggccccataacttttggcggtttctctgcaactggc
aatctctggagactgcaagtttctgaaactcattctggactttataacccacaagtgtgt
gagctgcagttttttggacaagaagtggtcaccacgagctatgcattgctaccacttcag
cagaattacacagagaacctagtcaacacacagggaacgacagcactggctgttgctgtg
gaaagtaatgtgctcaactactacagcacaagaagagattttcagggcctgtacggtctt
caagttacaaacatcaagcctttgggtgcctacgtggcagcagaggtgtcattcatgtcc
tctgccagtcaagttatgtaccaggagatggctcttcaagatgctgttgccatgggaact
gtcaacaacatagctgtcattaatgacactgggataacactaacaccaagagttccttcg
tgcactgcccaaacagacctcgtttttggcatcgatggcactgtgtccaccaacacattt
agtgccattgtggccttcatcaggagagttgtgcatactttcaccattggtgctgatgca
acccaagtatctgtaatacagggaggcagtccatcacggatagatttccctctgaaccag
taccaaagcctgccagggctgatacagggtcttgatgctatacaacagacagatacgcca
ggggagggcaagacatttagtaaccttggagctttcgggcagatgaatggaggaaggact
ggagtgaacaggctgttagttcttctcactgatggtgtgacaggtgcagaagacttccaa
caggcagctgaaaatgatgttgtggtattcactgttgccattggtgaagatgctgagctg
gccagcctagaggcatttagtccatccagtaaccatgtgttccgtgtgcgtgactcatat
gggctggtagatctgggcaacaggctgccaaagaagctgtgtgaagttggtgtgaccagc
tacatgactgtgaccttggatgtgaattacaccatggagttcctaactgcagcctcccca
ggattcactgctctcaaccttgctgttaaaactacctttttgagaggcctgcaaggagtg
tttggattccaagctgtgcaagtcttcaacctcatgcccggaccctggtatagcacacgt
gctaatatccgggttattgcgggtgcctatgccttggacgccattcagcagagggtcttc
aacatcacagcagctgggcagtttggctcctacagctttgacgtggcaaccatcacatat
gaccagattgtaaaccagctcctgtatggctacattgaagtccgcacagtgtttatgcag
agctacagagaccagttgtcagcatcgtacagaatactagccagcagtgtaaaactgaat
gttcttcgaatcttcagtagtctctacggggttcgatcaatggcagttacaaatatcaag
ccaggcaccacggctactacaacctggattgacttccaaataaactgtgcccaaactgct
gtacccaacattgtcaccacctacttggatgttactgactcgaatcagatggttggaacc
ctggatatcctccctgggtctggctatttatccattgaagcaccccgatgtggagtggag
ctggacctggtgcttgtacttgacgactcaggcagtgtaggggctgggaacttcaataag
ttaaaggaatttgtcaagagacttgttgcccaattcgagtttgcacaagatgcaacaagg
attggcataatccagtattccactgatgtaaaagcagtcttcagtctgaactcttatgac
acattggaggacatcaacacagcaattgatggcatgaagtacaagggtggaggtaccaac
actcacctggctctctatgacctggtcaacaatgcattcagctaccagaacggtgctagg
cctacagccagcaaggttgcagtcatcatcacagatgggatgtccacccagcccatcacc
agggccgcacaggaagtcaagactgctgggattgtcatgtatgccatgggtgtcggtagt
ggaactgaccaatcagagctgcaagaaatcgcaagttcctcggacagagttttcagtgca
tcaaattatgactccctcctcactctgacaggagggctggcaaataggttctgtgatgat
ggcagcagtgtgacaagcgtggccacagtagatctgagtgatgacttcagtgttgacttg
ttgaacgtgacatcagacactttcatcactcttcgagcaacagttcttgaacagctgaat
tttgtgcttggaaacttttccaacctcatccttacaaacatcaacttccagccaagcata
agcggcaaagtcagggtggtctttaccttgaactctctgggatacattgtcaacgagctg
caaatcatcatcaaccaagtggcctcaactgggacctttggcaacttggcagtcacaggt
gctaccttcgatgctcaaggtcctgcagttctctatggcattgtggaggtgaatagaaca
tttacatcagagatcagaagcatttccagctatgaggctgctgcacttagtatctctttt
acataccagttgctgcaaagctttactaccagtgtcaactttgctagggtcacctacatc
tctcctgggtatgcagcgacgacaacccttgtgtcctttgttacttcagtgagtgctaat
gtctcggatgacatcctcaccaacttcaacgcctctgtggctgggaccccaatgttcctt
caaggaacactcagtccagaattgcctatgtgtcctgcaaagatggatgtagtttttgta
ctggatggctctggcagtgttggccatgacaacttccaacggatgaagtcctttgtcaag
agagttgctgggagctttgccatcggaccatcatcagcccagatcagtttgttccagtac
agcaactttgtcatgcaagaatttgccctggacacctacgaatccatcggtgagatcaac
caggctgttgatgctgtcatgtaccaaggcgggggaacagccacaggactggcgctgtac
gaaatgagacagtacggcttctcctttgccaacggtggccgccctgggacacgacgggtc
gccattctcttgacagatggcatgtcatctgacactgttgacaaacatgcaatggcagcc
tggcaggctggtatcagcttgtatgttgtcgggattggatcaagtgtggacatgaatgag
ctgctggcaattggaggcactccggacaatgtctttagcctgggcaactttggacagcta
caagatcttggcagccgcctgccaaaccgcctgtgtgaagttggacggagtatgaatcta
atcctgtctctagatgttacatctgtgccctgctcatccatgttacgacagcagtttatg
tgtcttcagacagcgctcaaccaggctggactttcctaccagaatgggattctttcagtg
gcaccagtcaatcttatacgacccctggaatacagctacgttttccggctggttttcttc
caatatgctcgagctggcatcgcaagtatcgtaaatccggccacaactcagcttggaaac
ctgatggttgcttcagtgaatgtcatagatgatgactccctgccactctttgtgatggtg
gaggtgaattacactttcatccctgaactgaatcagccaaactctgcagtgtttgcctat
tggacaaacgtttttgaatcaaagttgactgggatagaaaatatcactggaatactgtcc
gtcattccaacagctttcagaccagggaatacggccacaagtctcattgcagatgtgacg
ttaattgtgcgacaaacagcaagcatttttgtccagtctgcactggtggcaggattcagg
tctggggacattgaaggtcatcctgtcattggtgggacggtatccaccacagctctcgcc
tgccctgtcaagctggacctggtgtttatcctggacagtagtgatagtgtcagcgtgcaa
gattttgaaatgatgagacagttcctcaagaaaaccgtgggagacttcaacatcggatat
gatgcaacacaaatcggactggtacagtactcagacgaggctgaaaccatatttgcctta
gattcctttagttctccaacctccctgagggatgccatcgaaaccattcagtacactgga
ggagctaccaacaccggcaatgctttggactacatggtacagtatatgtttgctagcagg
aatggggcgcgacaggattcgaccaaaatagccattgtactgacgggtggggcttcatct
gatgacatcaaagcagcagcacaaaggatgcggaaatcaagcgtgatcacctatgccatt
gggatcggcagtgaacttgattatgatcagctagattacattgcaggagcaccaacaagt
ctgactatactgcaggcatctactggtcttgtacagctacgtaacaccctctcaagaaag
ttatgtcaagtcagttccagtttgccatacattgtgaacatccctgtcgagacgtacaac
ttttccattgactacctggatgccaacacttctgcatccctgcagttgtacactcagttg
aatgaggctgtcaacttgagcttcacgggtgtgtcaggattcattgtgcagcttatgtcc
tttgcacctgggccttacaattctgtctcagctatatgccagatgtacatctccccttat
gcggtcactgatgtcaccaccagattccaaagttttaacacactgggaggtcctatacag
atcaacacggcccaaataagggtgataagagagcgaatcagacctctctacttgcagcta
cagctcgtttacaatttcacccgagatcttcaactcattggatcagcagcctttgtagat
ttgtcattgcagcttgaaaacgtgttctaccttctgtttgctggagaccaggattcaatt
gcttcggtctctgttggccaaataggaccagggcttaccgaaaccaccatcacagtgggt
gtggagttccaagcattcagtgctgcaataccgtccgttattaacgtcattgataatgcc
acagcaactggagtactgggtcaatttgaagtaactgattatatcatccaagagacggct
ccaacttgccaagtacagctggaccttgttttcgtgttggtcggtggaaagagcgtggga
gaggaaaattttgaaaagcagaaaggattcgtcaaaaaggttatcagtgattttgacatt
ggcccccaaagtacccaaatcagtatcatacaatatgcggaggatgcacagttggagatt
gctcttgatacctactccgattctgagtccatacaacgggatatagatacaatcaggtat
gttggaggatacgggttgacaatggcaggaaaagccatcgactatgctgcaagatacgga
ttctcaccaagaaatggagcccgtgctggggctaccagagtggctgtactcttcacgtat
ggtactccacatgatgatgttgctggtcctgctctcaacatgcggaaagggaatgtcttt
atttacggcgttgccatcaacagtaactttgattctgaccggctagtcagcatagctggg
acgtcaagaaacctgagacggctggcagacttcaatggtcttaacgagctgagaaataca
ttgccaactgaggtctgcggtgagaccacaaccatctttctcaggctaagcctgaatatc
acatacacggtggagtatcagactcttggatctgcttacaacatcttggtatccgagatc
gaatacaagctactcaacgagttctccacaagaactagatcggcagtgtttctacgcgtg
acacaaatccttccgggcgtccaagtggatcttgtcttcgtcttggatggtacgggtagc
gtgggagccacgaactttgagaaaatgaagaccttcgtgcagaagatgatcagcgacttt
gatcttggacccgaggcaactcgcatcggtgtggtggtctattccaaccgggcatcactg
gaaatcagcttggatgcctatgacgatcaagaagcgctgcaagatgcggtcgccgacatc
gcatatccgggcggttacactctgacaggggcagccatcgactacaccaccacctttgcc
ttctctactagaaacggtgctcgggacggagtgaggaaagtagccgtcatcttgaccgat
ggagtatcatatgatgaccctgcggagccggcccagagtatgcgcaaggcggccatcatc
acctatgccgtggggatcggtagcaaccttgaccgtgaccagttggacgtgattgccgga
gtgccagacaacctatttgtactggatgacttcagcatgctggacaacctacgaaccacc
ctgcccactcaagtctgtgacgcctctactagtgaacagattctcatcagaatcgtcatc
acatcagtgcggtttgacgtgtctctgttgaacggcaactctacagaattccagacactg
tttgcccaaatcaaccgtgccttcatcggcttcttcccaggagtccctggattcaccgca
cctctggtgtctctcgcacctggtcctgatgataattccgtggtggccatgtgtttggga
tcggtaccagcatttgctaccaacactgtgagaactggtctactgaacgcatcagaagag
ctcaacaacctgactctcaacacggccctcacaagcgttgtcgctgcacgtacctcggtg
attttcgtccggctggctgtgaatgcgacctacacagtcgactatcaagtccgtgggtct
gccgcatacaacgccttgtttgctcagctccaataccaggtgctgagtcagttttcccca
agtatcggatccgtagatatcgtgtctctacgagtgacccagatcctcccagggtaa
DBGET
integrated database retrieval system
