Branchiostoma floridae (Florida lancelet): 118427036
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Entry
118427036 CDS
T01074
Name
(RefSeq) collagen alpha-3(VI) chain-like
KO
K06238
collagen type VI alpha
Organism
bfo
Branchiostoma floridae (Florida lancelet)
Pathway
bfo04512
ECM-receptor interaction
bfo04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
bfo00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
118427036
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
118427036
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
bfo04147
]
118427036
00536 Glycosaminoglycan binding proteins [BR:
bfo00536
]
118427036
Exosome [BR:
bfo04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
118427036
Glycosaminoglycan binding proteins [BR:
bfo00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
118427036
Hyaluronan
Extracellular matrix or blood plasma proteins
118427036
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VWA
VWA_2
SEA
MatB
Motif
Other DBs
NCBI-GeneID:
118427036
NCBI-ProteinID:
XP_035692567
UniProt:
A0A9J7N474
LinkDB
All DBs
Position
12:14863918..14878201
Genome browser
AA seq
2061 aa
AA seq
DB search
TSQQIVVSICIRRTYDTVLLNANSSDSTALFQQVVQGLTTTFTSSPGIAAIQPIGFAPGC
GGVVSTVQCAVAPFALQTVSNTFQTLQVNLGVLTIDPAVTTVVSAATRRTVIVTVELTLT
YIVDYQDTSSEAYTNLSVTIENAVLQVFAANPADIQSVAITSVAPGASATSTSVTVSVVT
LGANVNTTTQIIVNTTSAGVQLGNLPIVSSTVGDTTPPCRAVADIVFLVDGTGSVGLENF
ERMKTFIRQLFAYLDIGENAVRVSIVQYAAQARTEFFLDQYYDLQEAQDAVDGIEYMGGY
TLTGKAIDFATNLHFDLRKGARADVTKIAVVITDGISYDDVNRPARRMRQAGIVTIAVGV
GNNLDRDQLTAIAGDAKTLLSLDDFDRLQDLTTSLPTMLCDVGTSQQIVVSICIRRTYDT
VLLNANSSDSTALFRQVVQGLTTTFTSSPGIAAIQPIGFAPGCGGVVSTVQCAVAPFALQ
TVSNTFQTLQVNLGVLTIDPAVTTVVPAATRRTVIVTVELTLTYIVDYQDTSSEAYTNLS
VTIENVLQVFAANPADIQSVAITSVAPGASATSTSVTVSVVTLGANVNTTTQIIVNTTSA
GVQLGNLPIVSSTVGDTTPLCRAVADIVFLVDGTGSVGLDNFERMKTFIRQLFAYLDIGE
NAVRVSIVQYAAQARTEFFLDQYYDLQEAQDAVDGIEYMGGYTLTGKAIDFATNLHFDLR
KGARADVTKIAVVITDGISYDDVNRPARRMRQAGIVTIAVGVGNNLDRDQLTAIAGDAKT
LLSLDDFDRLQDLTTSLPTMLCDVGTSQQIVVSICIRRTYDTVLLNANSSDSTALFRQVV
QGLTTTFTSSPGIAAIQPIGFAPGCGGVVSTVQCAVAPFALQTVSNTFQTLQVNFGVLRI
DPAVTTVVPAATRRTVIVTVELTLTYIVDYQDTSSEAYTNLSVTIENAVLQVFAANPADI
QSVAITSVAPGASATSTSVTVSVVTLGANVNTTTQIIVNTTSAGVQLGNLPIVSSTVGDT
TPLCRAVADIVFLVDGTGSVGLDNFERMKTFIRQLFAYLDIGENAVRVSIVQYAAQARTE
FFLDQYYDLQEAQDAVDGIEYMGGYTLTGKAIDFATNLHFDLRKGARADVTKIAVVITDG
ISYDDVNRPARRMRQAGIVTIAVGVGNNLDRDQLTAIAGDAKTLLSLDDFDRLQDLTTSL
PTMLCDVGTSQQIVVSICIRRTYDTVLLNANSSDSTALFRQVVQGLTTTFTSSPGIAAIQ
PIGFAPGCGGVVSTVQCAVAPFALQTVSNTFQTLQVNLGVLTIDPAVTTVVPAATRRTVI
VTVELTLTYIVDYQDTSSEAYTNLSVTIENAVLQVFAANPADIQSVAITSVAPGASATST
SVTVSVVTLGANVNATTQIIVNTTSAGVQLGNLPIVSSTVGDTTPPCRAVADIVFLVDGT
GSVGLDNFERMKTFIRQLFAYLDIGENAVRVSIVQYAAQARTEFFLDQYYDLQEAQDAVD
GIDYMGGYTLTGKAIDFATNLHFDLRKGARADVTKIAVVITDGRSYDDVNRPARRMRQAG
IVTIAVGVGNNLDRDQLTAIAGDPKTLLSLDGFDRLQDLTTSLPTMLCDVGTSQQIVVSI
CITTTYGTDLLNANSSDSTALFQQVVQGLTTTFTNSPGIAAVQPIGFAPGCGGVVSTVQC
SVAPFALATVSDTFQNLQGTLGALTVGPAGATVVSAATRTTVIVTVELTLPYTVDLQDTS
SQAYTNLSVTIENAVLQVFAANPADIQSVSITSVAPGATATSTSVTVSVVTLGANVDVTT
QIIVNTTAAGVQLGNLPVVSSTVGDTTPPCRAVADIVFLVDGTGSVGLENFERMKTFIRQ
LFAYLDIGENAVRVSIVQYAAQARTEFFLDQYYDLQEAQDAVDGIDYMGGYTLTGKAIDF
ATNLHFDLRKGARADVTKIAVVITDGISYDDVNRPARRMRQAGIVTIAVGVGNNLDRDQL
TAIAGDPKTLLSLDGFDRLQDLTTSLPTMICDVGTSQQIVVSICITTTYGTDLLNANSSD
STALFQQVVQGVRTDHFSKGN
NT seq
6186 nt
NT seq
+upstream
nt +downstream
nt
acaagtcagcaaattgtcgtctccatctgcatcagaagaacgtacgatacggtccttctg
aacgccaactccagtgattccacggcacttttccagcaagttgttcaagggctgacgact
acctttacgagcagtccgggaatagcagccattcaacctattggcttcgcacctggctgt
ggaggcgtagtttccaccgtgcaatgcgccgttgctcccttcgccctgcagactgtgtcc
aacaccttccagactctacaggtgaacttgggagtcttgacgattgatcctgcagtaact
accgttgtgtctgctgccacaagaagaaccgttattgtcacggtggagctgactcttacc
tacattgtggactatcaagatacgtcatcagaagcatataccaacttgagcgtcactatc
gaaaatgcggtcctgcaagtctttgctgccaacccagcagacatccagtcggtggccatc
acgtcggtggccccaggagcgtcggcaacaagcacatcggtgactgtaagtgtggtgact
ctaggtgcaaatgtcaacaccaccactcaaatcatcgtcaataccacatcggcgggagtg
cagcttggaaacctgccaatagtgtcatctaccgtcggagatactactcctccctgtaga
gcagtagcagacatcgtcttccttgtggatggcaccggcagcgtcggcttggagaacttt
gagcgaatgaagaccttcatcaggcagctctttgcctacttggatatcggagaaaacgcc
gttcgcgtctctatcgttcagtatgcagcccaggcgcgcacagaattcttccttgaccag
tactacgacctccaggaggcgcaagatgcagtggatggtattgagtacatgggcggctac
acgctgacaggtaaagccatcgacttcgccaccaatctgcacttcgacctgaggaagggc
gcgcgagccgacgtcaccaaaatagccgttgtcatcaccgacggcatatcctatgacgac
gtcaaccgtcctgctaggaggatgcgccaggcaggaatcgtcaccattgctgtcggtgtg
ggcaataacctggacagagaccaactgacagctatcgcaggagatgcaaagactcttctg
tctttagatgatttcgacagactccaggacttgactacctctctgcccaccatgctttgc
gacgttggtacaagtcagcaaattgtcgtctccatctgcatcagaagaacgtacgatacg
gtccttctgaacgccaactccagtgattccactgcacttttccggcaagttgttcaaggg
ctgacgactacctttacgagcagtccgggaatagcagccattcaacctattggcttcgca
cctggctgtggaggcgtagtttccaccgtgcaatgcgccgttgctcccttcgccctgcag
actgtgtccaacaccttccagactctacaggtgaacttgggagtcttgacgattgatcct
gcagtaactaccgttgtgcctgctgccacaagaagaaccgttattgtcacggtggagctg
actcttacctacattgtggactatcaagatacgtcatcagaagcatatacaaacttgagc
gtcactatcgaaaatgtcctgcaagtctttgctgccaacccagcagacatccagtcggtg
gccatcacgtcggtggccccaggagcgtcggcaacaagcacatcggtgactgtaagtgtg
gtgactctaggtgcaaatgtcaacaccaccactcaaatcatcgtcaataccacatcggcg
ggagtgcagcttggaaacctgccaatagtgtcgtctaccgttggagatactactcctctc
tgtagagcagtagcagacatcgtcttccttgtggatggcaccggcagcgtcggcttggac
aactttgagcgaatgaagaccttcatcaggcagctctttgcctacttggatattggagaa
aacgccgttcgcgtctctatcgttcagtatgcagcccaggcgcgcacagaattcttcctt
gaccagtactacgacctccaggaggcgcaagatgcagtggatggtattgagtacatgggc
ggctacacgctgacaggtaaggccatcgacttcgccaccaatctgcacttcgacctgagg
aagggcgcgcgagccgacgtcaccaaaatagccgttgtcatcaccgacggcatatcctat
gacgacgtcaaccgtcctgctcggaggatgcgccaggcaggaatcgtcaccattgctgtc
ggtgtgggcaataacttggacagagaccaactgacagctatcgcaggagatgcaaagact
cttctgtctttagatgatttcgacagactccaggacttgactacctctctgcccaccatg
ctttgcgacgttggtacaagtcagcaaattgtcgtctccatctgcatcagaagaacgtac
gatacggtccttctgaacgccaactccagtgattccacggcacttttccggcaagttgtt
caagggctgacgactacctttacgagcagtccgggaatagcagccattcaacctattggc
ttcgcacctggctgtggaggcgtagtttccaccgtgcaatgcgccgttgctcccttcgcc
ctgcagactgtgtccaacaccttccagactctacaggtgaacttcggagtcttgaggatt
gatcctgcagtaactaccgttgtgcctgctgccacaagaagaaccgttattgtcacggtg
gagctgactcttacctacattgtggactatcaagatacgtcatcagaagcatataccaac
ttgagcgtcactatcgaaaatgcggtcctgcaagtctttgctgccaacccagcagacatc
cagtcggtggccatcacgtcggtggccccaggagcgtcggcaacaagcacatcggtgact
gtaagtgtggtgactctaggtgcaaatgtcaacaccaccactcaaatcatcgtcaatacc
acatcggcgggagtgcagcttggaaacctgccaatagtgtcgtctaccgttggagatact
actcctctctgtagagcagtagcagacatcgtcttccttgtggatggcaccggcagcgtc
ggcttggacaactttgagcgaatgaagaccttcatcaggcagctctttgcctacttggat
attggagaaaacgccgttcgcgtctctatcgttcagtatgcagcccaggcgcgcacagaa
ttcttccttgaccagtactacgacctccaggaggcgcaagatgcagtggatggtattgag
tacatgggcggctacacgctgacaggtaaggccatcgacttcgccaccaatctgcacttc
gacctgaggaagggcgcgcgagccgacgtcaccaaaatagccgttgtcatcaccgacggc
atatcctatgacgacgtcaaccgtcctgctcggaggatgcgccaggcaggaatcgtcacc
attgctgtcggtgtgggcaataacttggacagagaccaactgacagctatcgcaggagat
gcaaagactcttctgtctttagatgatttcgacagactccaggacttgactacctctctg
cccaccatgctttgcgacgttggtacaagtcagcaaattgtcgtctccatctgcatcaga
agaacgtacgatacggtccttctgaacgccaactccagtgattccacggcacttttccgg
caagttgttcaagggctgacgactacctttacgagcagcccgggaatagcagccattcaa
cctattggcttcgcacctggctgtggaggcgtagtttccaccgtgcaatgcgccgttgct
cccttcgccctgcagactgtgtccaacaccttccagactctacaggtgaacttgggagtc
ttgacgattgatcctgcagtaactaccgttgtgcctgctgccacaagaagaaccgttatt
gtcacggtggagctgactcttacctacattgtggactatcaagatacgtcatcagaagca
tataccaacttgagcgtcactatcgaaaatgcggtcctgcaagtctttgctgccaaccca
gcagacatccagtcggtggccatcacgtcggtggccccaggagcgtcggcaacaagcaca
tcggtgactgtaagtgtggtgactctaggtgcaaatgtcaacgccaccactcaaatcatc
gtcaataccacatcggcgggagtgcagcttggaaacctgccaatagtgtcgtctaccgtc
ggagatactactcctccctgtagagcagtagcagacatcgtcttccttgtggatggtacc
ggcagcgtcggcttggacaactttgagcgaatgaagaccttcatcaggcagctctttgcc
tacttggatatcggagaaaacgccgttcgcgtctccatcgttcagtatgcagcccaggcg
cgcacagaattcttccttgaccagtactacgatctccaggaggcgcaagatgcagtggat
ggtattgattacatgggcggctacacgctgacgggtaaagccatcgacttcgccactaat
ctgcacttcgacctgaggaagggcgcgcgagccgacgtcaccaagatagccgttgtcatc
accgacggcagatcctatgacgacgtcaaccgccctgctcggaggatgcgccaggcagga
atcgtcaccattgctgtcggtgtgggcaataacttggacagagaccagctgacagctatc
gcaggagatccaaagactcttctgtccctggatggtttcgacagacttcaggacttgact
acttctctgcccaccatgctttgcgacgttggaacaagtcagcaaattgtcgtctccatc
tgcatcaccacgacgtacggtacggaccttctgaacgccaactccagtgactccacggca
cttttccagcaagttgttcaagggttgaccaccacctttacaaacagtccggggatagca
gccgttcaacccattggcttcgcacctggctgtggaggcgtagtttcgaccgtgcaatgt
tccgttgctcccttcgccctggcgactgtgtccgacaccttccagaatctacaggggacc
ttgggagctttgaccgttggtcctgcaggagctaccgttgtgtctgctgccacaagaaca
accgtcattgtcacggtggagctgactcttccctacaccgttgaccttcaagatacgtca
tcacaagcctataccaacctgagcgtaactattgaaaatgcggtcctgcaagtatttgct
gccaacccagcagacatccagtcggtgtccatcacgtcggtggccccaggagcgaccgca
acaagcacatcagtgactgtaagtgtagtaacgctaggtgcaaatgtcgacgtcaccacc
caaatcatcgtcaataccacagcggcgggagtgcagcttggaaacctgcctgtagtgtcg
tctaccgttggagatactactcctccatgtagagctgtagcagacatcgtcttccttgtg
gatggcaccggcagcgtcggcttggagaacttcgagcgaatgaagaccttcatcaggcag
ctctttgcctacttggatatcggagaaaacgccgttcgcgtctccatcgttcagtatgca
gcccaggcgcgcacagaattctttcttgaccagtactacgatctccaggaggcgcaagat
gcagtggatggtattgattacatgggcggctacacgctgacgggtaaggccatcgacttc
gccactaatctgcacttcgacctgaggaagggcgcgcgagccgacgtcaccaagatagcc
gttgtcatcaccgacggcatatcctatgacgacgtcaaccgtcctgctcggaggatgcgc
caggcaggaatcgtcaccattgctgtcggtgtgggcaataacttggacagagaccaactg
acagctatcgcaggagatccaaagactcttctgtccctggatggtttcgacagacttcag
gacttgactacttctctgcccaccatgatttgcgacgttggaacaagtcagcaaattgtc
gtctccatctgcatcaccacgacgtacggtacggaccttctgaacgccaactccagtgac
tccacggcacttttccagcaagtggttcaaggggtaagaaccgatcatttctcaaaagga
aattga
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