Branchiostoma floridae (Florida lancelet): 118427234
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Entry
118427234 CDS
T01074
Name
(RefSeq) collagen alpha-5(IV) chain-like isoform X1
KO
K06237
collagen type IV alpha
Organism
bfo
Branchiostoma floridae (Florida lancelet)
Pathway
bfo04512
ECM-receptor interaction
bfo04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
bfo00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
118427234
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
118427234
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
bfo04147
]
118427234
00536 Glycosaminoglycan binding proteins [BR:
bfo00536
]
118427234
Exosome [BR:
bfo04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
118427234
Glycosaminoglycan binding proteins [BR:
bfo00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
118427234
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
118427234
NCBI-ProteinID:
XP_035692772
UniProt:
A0A9J7M0Z3
LinkDB
All DBs
Position
12:complement(12467855..12508059)
Genome browser
AA seq
1811 aa
AA seq
DB search
MKFRDVLERHVLTSLAVVLILACCIQLSAAAACEGCSGKCVCNGTKGTKGERGLPGLQGP
PGLPGFQGLEGPPGPKGLLGARGNQGAMGPKGIRGAQGIPGFAGVPGIPGLPGLEGPMGP
PGLDGCNGTKGDLGPRGNPGPAGRGGTPGLPGLDGPKGEPGESGGAGEGIKGDRGDVGRN
GLPGPPGLNGLPGPQGDRGLEGSKGFPGPRGFQGEKGDMGLGFQGPKGAKGEGGLPGPPG
PPGILGEQVGLPGQIFAQKGQKGEAGAAGPIGFQGQKGEPGLAGPPGAPGGGGGCPSVGC
PYGCPVGCPGYPAPQGQRGPKGEPGRPGSPGLPGQTGPPGPFGFNGQKGDPGQPGTSGGP
GFVGQKGEPGLPGRAGAPGAPGAATAGGRPVPGPQGAPGRPGGSGFPGQKGEPGLPGFGG
PKGYPGPAGRPGPPGRPATGGQSFPGAPGEPGVPGRDGPQGPPGGGGMPGQKGEPGLPGA
TVGGGVGPPGRPGGPGFPGAKGDRGNPGAPGLPGAPGQAIGGVGPQGPMGPPGEPGRPGG
PGRPGGSGTPGFPGPKGEPCGGCPPGFPGPKGDRGFPGPPGQTVGGGQPGTPGFPGAKGE
PGFPGGRGLDGPPGPAGRPGAPGFPGVKGEPGFVSPQPGTPGFPGPKGDPGMPGQPGGPG
RDAVGGLVGPPGTPGFPGAKGEPGNPGFDGGPGQPGNPGRPGPQGPPGLATGGGIGAPGP
KGDAGFPGAPGTPGFPGQKGEPAIGSSQIGAPGPIGMPGPPGPPGLNGPPGLPGGPGGPG
QPGMDGFPGQKGEPGLPGGTGPGGQGLPGAKGEPGVPGFPGPKGDPGFPGGPGQPGGAGF
PGQKGEPGFSGGGGLPGPPGPPGGNGFPGPKGDAGFPGGPGSLGPPGQPGPPGPPGMPGN
PGLDGFPGPKGEAGRGSGGFPGPQGPPGPPGPPGGGGFPGQKGEPGLPGFGGVGAKGDPG
RDGAPGEPGLGGPPGLPGPRGLDGGPGFPGPKGEMGVMGLPGGPGPMGPPGPAGFGGPKG
EPGIPGGPGQPGGPGFPGQKGEAGFPGGPGLPGPPGPPPPAGLRGPKGDPGFPGQDGQPG
TVGFPGPPGPKGNPGLGGPPGPPGFPGAKGEGGIPGSPGNPGFPGTKGEPGIPGRPGGPG
FKGDPGFPGGPGQPGNPGLPGMKGEPGFGGAIPGPPGLPGRKGEPGRSGGSGFPGAKGEP
GRPGGPGQPGRDATSAARGAPGPPGTPGIPGAKGDRGNPGPPSGPGRPGPQGPPGFPGPK
GEPGIPGGPGRDGGPGSPGFPGQKGEPARAGPGLQGPPGIPGGKGEAGLPGPPGRPGFPG
AKGESGVPGGPGFGGPPGPPGPPGQGGFGQKGEAGIPGGPGRDGGPGPMGSPGNPGRSGF
PGQKGEPGPMGPPGRSVSGGLPGPPGPMGTPGSPGFPGSKGERGSPGIGGFQGAKGDRGS
PGNPGGPGQPGNPGFSGLPGPKGDPGLPGPPAVGLKGEPGFPGGPGQPGSPGSDGLPGPP
GSPGFPGPKGNPGLPGRSGFPGTKGNPGAPGLQGPPGTSGPPGPPGFPGQAGAPGASGGN
QGFIFARHSQTTQLPECPRYTSKMMDGYSLLYTQGNERTHGQDLGTAGSCLRRFSVMPFL
FCNINNQCQVASRNDYSYWLSTPEPMTMSMAPIRGRAIEPYISRCVVCEAPAQVLAIHSQ
ALTIPPCPNGWSSLWMGYSFVMHTGAGAEGTGQALASPGSCLEDFRSSPFIECHGRGTCN
YYATTYSFWLTTVEQGAEFRTPNPETLKAGNLRQRISRCQVCMRYQPPRGDTGFSGPRPF
GSEAESITGGK
NT seq
5436 nt
NT seq
+upstream
nt +downstream
nt
atgaagtttcgagacgtgttagaaagacacgtcttgacatcgttagcggtggttctgata
ctggcctgctgcatccagctatcagcggctgcggcatgtgaaggctgttcaggaaaatgt
gtttgcaatggaacaaaaggaaccaagggtgaaagaggactaccaggtctacaaggacct
cccggattaccaggattccaaggactagagggaccaccaggaccaaagggactactgggc
gcaagaggaaaccaaggtgctatgggaccaaagggaatcaggggtgcacaaggcattcca
ggctttgctggtgttccaggaattccaggtttgccaggactggaaggacccatgggtccg
cctgggttggatggctgcaatggaacaaaaggagatctcggacccagaggtaacccaggc
ccagcaggaaggggtggtactccgggcttgcctggacttgatggaccaaaaggtgaacca
ggtgaatctggtggtgctggagaagggatcaagggagacagaggtgatgttggcagaaat
ggactacctggcccacctggacttaacggacttcctggcccacaaggagacaggggactt
gaaggctcaaagggcttccctggtcccagaggcttccaaggagagaaaggtgacatgggc
ttgggcttccaaggaccaaagggagctaagggtgagggtggtcttcccggcccacctgga
cctcctggcattctaggagaacaagtcggactccccggacaaatctttgctcaaaaggga
caaaagggtgaagcaggagcagcaggacccattggtttccaaggccagaagggagagcca
ggccttgcaggaccccctggtgccccagggggaggcggaggctgtccatccgttggttgc
ccttatggctgtccagtgggctgtcctggatacccggcaccccaagggcaaagagggccc
aaaggtgaacccggacgccccggaagtcctggtctccctggccaaactggaccacccgga
ccctttggcttcaacggacaaaaaggtgaccccggccaacctggcacctctggcggccct
ggctttgttggacagaagggagaaccaggccttcctggtagagctggtgcaccaggagca
cctggtgcagctacagctggtggcagaccagttcccggaccccagggtgccccaggaaga
cctggaggtagtggattccccggacagaagggagagccaggtcttcccggctttggcggc
cccaaaggttaccccggccccgctggtcgtcccggcccacctggtcgccctgctactggt
ggtcaatccttccctggtgcccccggagagccaggtgtcccaggacgtgatggaccccag
ggcccacccggcggtggcggaatgcctggtcagaagggagaacccggtctgcctggagca
actgttggtggcggtgtaggcccacccggacgccctggtggtcccggattccccggtgct
aagggagatagaggaaaccccggtgctccaggtctgcctggtgcacctggccaggccatc
ggaggagttggtccacagggcccgatgggtccacctggagaacccggccgccctggcggt
cctggccgtcccggcggatctggaacacctggattcccaggtcccaaaggagagccatgt
ggcggctgcccacctggcttccccggacccaagggagatcgtggattccccggcccacct
ggtcagactgtaggtggaggacaacctggcacgccaggcttccctggtgccaagggtgaa
cccggattccctggtggtagaggtttggatggtccaccgggcccagctggccgtcccggc
gcccctggcttccctggtgtgaagggtgaacctggctttgttagtcctcaacctggaact
ccaggcttccccggacccaagggtgatcctggcatgcctggtcagcctggtggtcctggt
cgtgatgctgtcggtggtctggttggacctcctggaactccaggcttccctggagcaaag
ggtgaacctggcaaccctggttttgatggaggacccggtcagcctggtaatcctggccgt
cccggcccacaaggaccgcccggtttagcaacaggtggtggcatcggtgccccaggcccc
aagggtgatgctggtttccctggtgcccctggtacacctggcttcccaggccagaaagga
gaacctgccattggctcatcccagattggcgcacctggtcctattggtatgccaggccca
cctggtccacctggtctgaacggtcctcctggacttccaggcggccctggtggtcccgga
caacctggtatggatggcttccctggacagaagggtgaacctggtcttcctggcggcact
ggtcctggtgggcaaggtctgcccggtgctaagggagagcctggtgtgcccggcttcccc
ggtccgaaaggagatcctggttttcctggcggtcccggtcagcctggcggtgctggattc
cctggacagaagggtgagcctggcttcagtggtggtggcggacttcccggaccccccggc
ccccctggaggaaatggattccccggacctaagggagatgctggcttccccggaggccca
ggatcacttgggccccctggacagcctggcccacctggacctcctggcatgcctggtaac
cctggtttagatggcttccctggccctaagggtgaggccggtcgtggctctggaggcttc
cctggacctcaaggaccccctggaccacccggaccccctggtggtggtggattccctgga
cagaagggagagcctggtcttcctggatttggtggtgttggtgcgaagggtgacccaggg
cgtgacggagctcccggtgaacctggcctgggcgggccacctggactgcctggaccacgc
ggtttggatggaggccctggcttccctggaccaaagggagagatgggtgtcatgggtctg
cctggtggacctggacctatgggaccccctggtcctgctggatttggtggccccaaggga
gaacctggtattcctggcggccctggtcagcctggaggccctggtttccctggacagaag
ggtgaagctggattccctggaggccctggactgcccggtccacctggacccccaccgccc
gctggactgagaggaccaaagggagacccaggattcccaggtcaggacggtcagcctggt
actgttggtttccctggcccacctggtcccaagggtaaccctggccttggcggtccacct
ggcccacctggcttccctggtgctaaaggagagggtggaatccctggctcacctggtaac
cctggcttccctggaacaaagggtgaacctggtatccccggacgcccaggcggacctggc
tttaagggagacccaggcttccccggaggccctggacagcctggcaacccaggcctccct
ggaatgaagggtgaacccggctttggtggtgccatccccggaccccccggccttcccgga
cgcaagggtgagcctggcaggtcaggaggcagtggcttccctggagctaagggcgagccc
ggcagacctggaggacctgggcagcctggcagagatgccacctctgctgcccgtggagcc
ccaggacccccaggaacccctggaatccccggtgcaaagggagatagaggcaaccccggc
ccacccagtggtcccggccgtcccggtccccagggtcctcctggcttccccggtcctaag
ggtgaacccggtattcctggcggtcctggtcgtgatggcggccctggctcacctggtttc
cctggtcagaagggcgagcccgctagagctggtcctggactgcagggtcctcctggaata
cctggtggtaaaggagaagctggtctacctggcccccctggccggcctggattccctggt
gctaagggagagtctggtgttcctggtggccccgggttcggcggcccacctggtccacct
ggcccacccggacaaggaggatttggacagaagggagaggctggtattcctggtggtcct
ggccgtgatggtggtcctggtcccatgggctcccctggcaaccctggtcgctctggattc
ccaggacagaagggagaacctggtccgatgggtcctcctggcaggagtgtctcaggagga
ctgcctggcccacctggccccatgggtacccctggatcccctggcttccctggatcaaag
ggagaacgtggatcacctggcattggtggattccaaggagcaaagggagaccgcggatcc
cctggcaatcctggaggccctggccaacccggaaaccctggtttctctggtctgcccggt
cctaagggtgatcccggcctgcctggcccaccagctgttggtctgaagggagaaccggga
ttcccaggaggcccaggccagccaggttccccaggctctgacggcctgcctggcccacct
ggttctcctggattcccaggtcccaaaggaaacccaggtcttcctggaagatctgggttc
ccaggaaccaaaggaaaccctggtgcccccggtctgcaaggtccccctggtacaagcggt
ccccctggtcctcctggcttccctggacaggcaggtgccccaggtgccagcggtggtaac
caaggattcatcttcgcaagacacagtcagaccactcagctgcccgagtgcccacgatac
acctccaagatgatggacggatacagtttgctgtacacacagggcaacgagagaacacac
ggacaggatctaggcacggctggtagctgcttgagaaggttcagtgtcatgccattcctc
ttctgtaacatcaacaaccagtgccaggtggcatccagaaacgactactcctactggctg
tccacccccgagcccatgaccatgagcatggcgcccatccgtggccgcgccatcgagccg
tacatcagtagatgtgtggtgtgtgaagccccagcccaggtcctggccatccacagtcag
gccctgaccatcccaccctgtcctaacggctggagcagcttgtggatgggctacagcttt
gtcatgcacactggtgcaggtgctgagggcactggacaagcgctggcatcgccagggtct
tgcctggaagacttccgctcatcgccattcatagagtgtcacggcaggggcacgtgcaat
tactacgccaccacgtacagcttctggttaacaactgttgaacagggcgccgaattccga
acgcccaacccagaaactctaaaggctggtaacctgcggcagcgcatcagtaggtgccag
gtctgcatgcgttatcagcctccgcgaggagacaccgggttcagtgggccacgaccattc
ggttcagaagcagagagcatcacaggagggaagtaa
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