Branchiostoma floridae (Florida lancelet): 118427235
Help
Entry
118427235 CDS
T01074
Name
(RefSeq) collagen alpha-2(IV) chain-like isoform X1
KO
K06237
collagen type IV alpha
Organism
bfo
Branchiostoma floridae (Florida lancelet)
Pathway
bfo04512
ECM-receptor interaction
bfo04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
bfo00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
118427235
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
118427235
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
bfo04147
]
118427235
00536 Glycosaminoglycan binding proteins [BR:
bfo00536
]
118427235
Exosome [BR:
bfo04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
118427235
Glycosaminoglycan binding proteins [BR:
bfo00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
118427235
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
118427235
NCBI-ProteinID:
XP_035692777
UniProt:
A0A9J7N4D6
LinkDB
All DBs
Position
12:12509560..12556641
Genome browser
AA seq
1786 aa
AA seq
DB search
MGANIVGKSGSCRPSPWNMRLWMATGFLLLALLDVALAGTQCLGCSGRSSCSGCVGSKGN
RGAPGPIGPQGLQGNQGFPGPEGPYGEKGNKGTPGDPGPRGQKGDRGKMGVPGFPGLNGI
PGLQGLPGAMGMPGLDGCNGTQGDPGGPGLPGVDGSRGPPGKTGKKGVKGEPGLALGGTK
GQKGDAGRPGLDGLPGPPGLDGLSGSNGAPGEPGLQGDRGEKGDKGLKGSMGLGFAGPKG
EPGEPGKPGPPGPPGGGTGEQRQPPGGAIGEKGQKGEFGIRGPTGPKGLPGNPGPPGPPG
QVIGGGGGTVGLLGPKGQPGDPGLAGPRGPPGAAGPPGFPGSKGYPGDPGRGGSPGVPGP
KGNPGEAGFPGAPGPPGNPAPGFTGAAGPPGPPGPAGLPGAVGPKGQPGNNGGSGPRGPQ
GDPGGPGLPGPPGSSFGSTVGRKGEPGIPGVPGMIGPQGPPGFPGRKGEAGVPGRPGVGV
GALPGRDGPPGTPGGPGPKGDPGFPGAPGQPGRVTGTGPIPGPQGPPGPPGIPGGNGEPG
LPGSPGFPGAKGERGGDCFACPGGQKGERGDSGAPGAPGGVTQPGRPGTPGLKGEPGTPG
LPGTPGTQGPEGPAGPRGPPGPAGMPGDTFGGGAIPGAPGAKGERGDPGLPGAPGRPGFG
AGGSGPPGPPGIPGGPGPKGEPGIPGRPGGPGRDGGPGLQGPPGPSFGGGPGLPGMKGLR
GDPGLSGPPGAPGPKGEPGDSFATQTRPGEPGPPGPVGLPGQPGFQGEPGGPGNPGPPGG
PGRPGVKGEAGIPGLPGSSFPGPVGLTGPRGDPGLPGLPGPRGDPGLPGRPGGGGFPGPK
GEPGNPAIGGGVGPVGLPGPPGLNGGPGPRGDDGIPGGPGLPGPPGNIGFPGLKGEPGRP
GQPGRPGEPGDSGAGGSVGPMGPPGPVGGPGLPGGPGRKGEMGAPGGPGFGGRPGPPGEN
GLPGPRGFDGPPGRPGPGGGDGIPGQPGGPGPKGDMGMPGLSGPAGPPGPPSGLSRPGPP
GDRGFDGRPGGPGTPGAKGEPGAPGLPGPTGPPGRPFQGPQYAPPGERGDPGRPGSPGLP
GNPGPPGGLGPPGDMGRPGAPGLPGPPGLPGDGVGLPGPPGRPGGPGPRGDDGFPGGPGT
KGERGDNGRAGTPGPPGSPGFPGAKGEGGASVGLPGPSGLDGPPGENGLPGFPGAKGEPG
NPGIPGPPGTPGRDSGGGIPGPPGPRGFDGAPGPKGDPGFGGGPGLPGPAGPPGGSGGPG
PKGDPGFSGRPGQPGNPGPPGPSGPPGEGAGGRVGPPGAPGFPGERGQNGAPGTDGLPGG
PGPKGDPGFSGGAGPPGPPGPPGRVVGGVPGQKGDPGFPGRNGLPGPQGPPGTPGGNGFP
GQKGARGDSGPAGPAGGVSLPGPPGLQGPPGPNGRPGGPGPKGDQGPPSLSGGPGPRGDP
GPPGLSGRPGSPGNPGVNGLKGERGEPGRSFGGGVGPRGDPGTPGQPGNRGLPGLPGASG
PPGGPGGPGPQGDDGQPGFPGGAGPPGDPGLRGLGGAPGLAGPRGPDGPPGPPGRSAGAV
PTGHLLTRHSQTTQIPQCPEGMPKLWDGYSLLYLEGNERSHGQDLGLPGSCLPRFSTMPF
IFCNINNVCNFAGRNDKSYWLSTSAPIPMMPVRDDAIRPYISRCAVCEAQSSAMAVHSQE
LVIPECPRGWRGLWIGYSFLMHTAAGAEGGGQSLSSPGSCLEDFRATPFIECNGARGTCH
YFANKFSFWLSTISQNEQFADPVPETLKAGQLRTRVSRCQVCIKNV
NT seq
5361 nt
NT seq
+upstream
nt +downstream
nt
atgggggccaacatcgtgggcaaatctgggtcttgccgacctagcccatggaatatgagg
ttatggatggccacagggtttcttctattggcccttctggacgtggcgttagcgggtaca
caatgtttgggatgcagtggccgaagttcttgttctggctgtgtaggatcaaaaggcaat
aggggggcaccaggaccaataggacctcaaggattacagggcaaccagggcttccctgga
ccagaaggaccatatggggagaaggggaataaaggaacacccggcgaccctggaccaagg
gggcaaaagggagacaggggaaaaatgggtgttccaggctttccaggattaaatggcatc
cctggcctacaagggttgcctggtgctatgggcatgcctggtttagatggctgcaatgga
acccagggagacccaggtggccctggcttacctggagtggacggttctcggggaccaccg
ggtaaaacaggcaagaaaggagtcaaaggtgaacctggcttggcacttggtggaacaaaa
ggacagaagggagatgctggcagaccgggccttgacggtttaccgggtcctcctggtcta
gatggactgtctggaagtaatggagctcctggagaacctggactacagggtgacagaggc
gaaaagggagacaaaggcttgaaaggatctatgggccttggctttgcaggaccaaaagga
gagcctggtgagccaggtaaacccggccctcctggacccccaggcggtggaactggagaa
cagagacagccgccagggggcgctattggagagaagggacagaagggagagttcggaatc
aggggtcccactggtcctaagggtctgcctggtaaccctggtccccctggaccaccagga
caggtgattggtggaggtggaggaacagttgggttacttggtcccaagggacagccagga
gacccaggattggccggaccacggggtccacctggagcagctggtcctcctggcttccca
ggcagcaagggatatcctggtgaccctggacgtggtggatctcctggtgttcccggaccc
aagggtaatcctggtgaagctggtttccccggagcccctggaccacccggcaaccctgca
cctgggtttactggagcagctggcccacccggcccccctggcccagcagggttacctggc
gctgtaggacccaagggccaacctggaaataatggagggagtggccccaggggacctcaa
ggagaccctggcggccctggtctgcctggcccacctggatcgtcctttggtagcactgtg
ggcagaaagggagaaccaggcattccaggtgtaccaggcatgattggtcctcagggtccc
ccaggattccctggtcgcaagggagaagctggtgttcctggtcgccctggtgttggcgtg
ggtgcgctcccaggcagagacggccctcctggaacccctggtggacctggacccaagggt
gatcctggtttccctggagcaccaggccaacctggcagagtaactggaactggtcccatc
cctggtccacagggtcccccaggacctcctggaattcccggaggaaatggagagcctggc
ttgcctgggtcccctggcttccctggtgctaaaggtgagcgtggcggagactgttttgcg
tgtccgggtgggcagaagggagagcgtggtgactctggcgcacctggagcacctggcggg
gtcacacaacccggacgtcctggcacacctgggctgaagggagagcctggaacacctggt
ctacctggaactcctggaacacaaggacctgagggacccgctggcccacgtgggcctcct
ggcccagccggaatgccgggagatacattcggaggtggcgccattcctggagctccaggt
gccaagggagagcgtggtgaccccggcttgcctggtgcccctgggagacctggattcgga
gctggaggaagtggccctcctggaccacctggtattcctggtggacctggtccaaagggt
gagcctggcattcctggtcgacctgggggcccaggtcgggatggtggtcctggtctccaa
ggtccacctggtccatcatttggtggcggtcctggccttcctggaatgaaggggttgcga
ggtgaccctggcctttccggaccccctggtgcccctgggcctaagggtgaacctggtgat
tcatttgctacacaaacccgtcctggtgagcctggcccacctggtcctgtgggtctccca
ggacagcctggtttccagggagagcccggcggcccagggaaccctggaccacctggagga
cctggacgccctggagttaagggagaggctggtattcctggactgcctgggagctccttc
cctggtccagttggtctgaccggacccaggggtgaccctggcctgccaggattgcccgga
ccaaggggagaccccggtctgcctggccgccctggaggaggaggattccctggaccaaag
ggagagcctggaaacccagctattggcggtggtgttggccctgtgggtctccctggccca
cctggcctgaacggagggccaggacctcgtggagatgacggcatcccaggcggccctggt
cttcctggtccccctggaaacatcggcttccccggcctgaagggagagcccggacgtcct
ggtcagcccggacgtcccggtgagcctggtgactccggcgccggcggatctgtggggcca
atgggaccacccggtcctgtgggcggacctggcttaccaggtggacctggccggaaggga
gagatgggtgcccctggtggtcctggctttggaggtcgcccgggtcctcccggtgaaaat
ggcctgcctggcccgcgtggttttgatggcccacctggtcgacctggccctggtggtggt
gacggcatccctggtcagcctggaggtccaggtccaaagggagacatgggtatgcctgga
ttgtccggtcctgctggtccacctggcccaccctccggcctctctcgccccggaccacct
ggagaccgtggatttgacggcagacctggcggccccggcacacctggagctaagggtgag
cccggtgcgcctggacttccaggccccacgggaccccccgggcgacctttccaggggcca
cagtatgctccaccaggagaaaggggagatcctgggaggcccggttcacccggcctcccg
ggaaatcctggtcctcccggtggtttgggacctcccggtgacatgggccgccctggcgcc
cctggtcttcccggacctcctggcctgcctggtgatggagttggacttcctggcccacca
ggacgaccaggcggccctggcccacgtggtgacgacggcttccccggtggccctggtact
aagggagaacggggtgataatggaagggctggtacccctggtcctcctgggtctcctggg
ttccctggagctaaaggtgaaggtggagcatcagtaggactaccaggaccctctggtctt
gatggcccccctggagaaaacggcctgccaggcttcccaggtgctaagggtgaaccaggt
aaccctggtatacccggcccacctggtacacccggtcgggacagtggcggtggtatccct
ggcccccctggcccaagagggtttgatggagctcctggaccgaagggtgacccaggtttc
ggaggcggccctggtctgcccggtccggctggtccccctggtgggtccggcggccctggt
cccaagggtgaccctggattctctggaagacctggacaacccggtaaccccggacctccc
ggtcccagtggacctccaggtgagggtgcaggcggtcgggttggcccaccaggtgctcct
ggtttcccaggagaaagaggacagaatggcgcacctggtactgacggacttcctgggggc
cctggtcccaaaggtgacccaggtttctcaggcggtgctggccccccaggtccacctggt
ccccctggccgtgtggttggtggagtgcccggacagaagggagatcctggcttccctggg
agaaacggtctgcctggtccccagggtccccctggcacaccaggcggaaacggcttccca
ggacagaagggagcgagaggtgactccggtcccgctggacctgcaggtggggtttcccta
cccggccctccaggacttcaaggcccccctggtcccaatggtcgccctggcggccccgga
cctaagggagaccaaggtccaccttctttgagtggtggccctggacccagaggtgatcct
ggcccacctggtttatctggccgtccaggttctccaggaaaccccggtgtgaatggtctg
aagggagagcgtggtgaacctggccgctcctttggtggcggtgttggacccaggggagac
cctggtacacccggccagcccggaaacaggggtctgccagggttacctggggcttctggt
cccccaggtggccctggcggccctggtccccagggtgatgatggacagccaggcttccct
ggtggtgccggcccccctggagaccctggactgcgcggccttggtggtgctcctggtctt
gcaggtccccgtggtccggatggtccacctggcccaccaggccgatcggccggagcagtg
ccgactggtcacctcctgaccagacacagccagaccacccagataccccagtgtccagag
ggcatgccaaaactgtgggacggctacagcttgctgtatttggaaggcaatgaaaggtca
catggccaagatctaggtctgcctggttcctgtctgcccagatttagcacgatgcccttc
atcttctgtaacatcaacaacgtctgcaactttgctggcagaaacgacaagagctactgg
ctgtctacttcagcacccatccccatgatgcctgtcagagatgatgccatcagaccctac
atcagtaggtgtgccgtgtgcgaggcccagtcctctgccatggctgtgcacagtcaggag
ctggtcatcccagagtgtccgcgaggctggagaggcctgtggatcggctactctttcctg
atgcacaccgcggcaggagcggaaggcggcggccagtccctctcgtctcccggcagctgt
ctcgaggacttccgcgccactcccttcatcgagtgcaacggtgcccgcggaacgtgccac
tacttcgccaacaaatttagcttctggttgtccactatatcacaaaacgaacaattcgcc
gacccagtaccagagacactgaaagcaggacagttacgaaccagagttagcagatgccag
gtgtgcatcaagaacgtgtaa
DBGET
integrated database retrieval system
