Branchiostoma floridae (Florida lancelet): 118427488
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Entry
118427488 CDS
T01074
Name
(RefSeq) short transient receptor potential channel 1-like isoform X1
KO
K04964
transient receptor potential cation channel subfamily C member 1
Organism
bfo
Branchiostoma floridae (Florida lancelet)
Brite
KEGG Orthology (KO) [BR:
bfo00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
bfo04040
]
118427488
Ion channels [BR:
bfo04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
118427488
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
TRP_2
Ion_trans
Ank_2
Ank
DSPc
FTA4
DUF1744
MIEAP
DUF2937
Topo_VI_alpha
Motif
Other DBs
NCBI-GeneID:
118427488
NCBI-ProteinID:
XP_035693205
UniProt:
A0A9J7M4Z2
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Position
12:complement(20227716..20264743)
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AA seq
878 aa
AA seq
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MPLRKLRFREEFSPSRRWSEPAFLPEEPEPIPFEFADTWKPLVEPQPALSIDERFYLAAV
EKGDLVAVQRILKNKDKAGQKVNIHCVDQLGRSALLIAIEHDLSDITKLLLRHDIYVGDA
LLFAVNEEAAWAVELLLDHRPMHKASMMDVVESVCYSNFAPPDVSPVMLAAHRDNYDIIK
ILVKRGAYLPSPHTVGCDCVYCTSSSERDSLRHSRRRLNIYRALASPSLMALTEEDPIHK
AWILSNELKRLSFVEVEFKSDYEKLSAQCKKFSTDLLDEVRDSKELLAVLNAHNPNHPEP
VKEKGGVGMSLARLKLAVEYGQKEFVARPSCQQLLNRVWYSGVPRFRTLPLAGKLLVALG
ISLIWPLLSVAYLVAPRSGLGSIIRSPAIKFISHSASYIIFLLLLYISTYDDFSAISLRK
YSGPPLTTPEYIIMVWVLGMVWAEVKQLWRDGVREFVSESRNWMSYIMNFLYIVSFTLKI
VAHLKFEDEDACRSQWGRYHPNLVAEALFAVANIFSFLRLTFLYTASPVVGPLQISVGRM
LPNIFLYLALFGLVLLSFTIGLQQLYWVYNEVPREHIPTNIVASPPTPQILINISKEYAE
ANGTCSIELATYSAPGIELPNNSYTCQGVQCPNHNNVFSSVHEAVLTLFWYQFSMAHVQI
YSSNTGVQKHDMYTGFLGAVMVGCYNIIVVIVLTKLLNAMLQRSICITLEHEDTEWKYAH
TKLWMSYFEDSATLPPPLNLVPSPKSCYYCLAWISSKLRNLCGRKLKQFSVESGDNETNQ
SRRSRSENKIPSDYREVMRKLVQRWLTHRRRKDRQSKEALVERFNELKQELANFRKELRE
LLKKRMMKIETKKLSANLTTPLGSASLNYERTTREFFI
NT seq
2637 nt
NT seq
+upstream
nt +downstream
nt
atgccgctgaggaagcttcggttccgggaggagtttagcccgagtcgccggtggtccgag
ccggccttcctcccggaggaacccgagccgataccgttcgagttcgccgacacctggaaa
cccctggtggagcctcagccggccctatccatagatgagcggttttacctcgccgcggtg
gagaagggagacctggtcgccgtacagaggatcttaaagaacaaagacaaagcaggacag
aaagtgaacatccactgtgtggaccagctggggagaagtgctctgctgatcgccatagaa
cacgacctttctgacatcaccaaactgctgctcagacatgacatctacgtgggtgacgcg
ttactgttcgcggtgaacgaggaggctgcctgggcggtggagttactactggatcacaga
ccgatgcataaggccagcatgatggacgtcgttgagagtgtgtgctattcaaatttcgcg
ccacctgacgtcagtcccgtcatgctcgccgcacatagggacaactacgatatcatcaag
atcctagtcaagagaggtgcgtacctgccgtccccccacacagtagggtgcgactgtgtg
tactgtacctcctctagtgagcgggacagcctccgtcactcccgccgccgcctcaacata
tacagagcactcgccagcccttcgctgatggctctgaccgaggaagaccccatccacaag
gcctggattctcagcaacgagctcaagcgactcagctttgttgaggtcgagttcaaaagt
gactacgagaagctgtccgcacagtgcaagaagttttccacggatctgctagacgaggta
cgggattctaaggagcttcttgctgtgctgaacgcgcacaacccgaaccaccccgagccg
gtgaaggagaagggcggagtagggatgagtctggcccgcctgaaactcgcagtggagtat
ggccagaaggagtttgtggcccgaccgagctgccagcagctgctgaaccgggtatggtac
agcggcgtgcctcggttccgcacactccctctggccgggaagctcctggtggcgctcggt
atcagtctcatctggccgctcctgtccgtggcgtacctggttgcaccgcgcagcgggctg
ggctccatcatcagatccccggccatcaagttcatcagtcacagcgcctcctacatcatt
ttcctcctcctgctgtacatctccacgtacgatgacttctcagccatctcactgaggaag
tactccgggcctccgttgactacgcctgagtatatcatcatggtctgggtactgggaatg
gtgtgggccgaagtgaagcagttgtggagagatggagtgagagagttcgtgtcggaaagt
cggaactggatgagctacatcatgaactttctctacatcgtcagcttcacgctcaagata
gtagcacacctgaagtttgaggacgaggacgcgtgccgcagccagtggggccggtaccac
ccgaacctggtggcggaggctctgtttgccgtggcgaacatctttagtttcctccgcctg
actttcctgtacaccgctagcccggtggtgggccctctgcagatttccgtcggaaggatg
ttgccaaacatcttcctgtacctggccttgttcggattggtcctgttgtcctttaccatc
ggactgcaacaactctactgggtctacaacgaagtccctcgagagcacatccccacaaac
atagtggcctctccccctacgcctcagatcctcattaacatatcaaaggagtacgccgag
gccaacggcacctgcagcatcgagttggccacctacagcgcacctggcatagagctgccg
aacaacagttacacctgccagggcgtgcagtgccctaatcacaataacgtcttttccagt
gtgcacgaggcggtcctgacgctgttctggtaccagttcagcatggcgcatgtgcagatc
tactccagtaacacgggtgtgcagaaacatgacatgtacacggggttcctgggagccgtc
atggtcggctgttataacatcatagtggtcatcgtgctgaccaagctgctcaacgccatg
ctgcagcggtccatctgtatcacactggaacatgaggatacagagtggaagtacgctcac
accaagttgtggatgagttatttcgaagactcggcgacccttccaccccctctgaacctc
gtaccgagcccgaagtcctgttactactgtctggcctggatcagctccaaactacggaac
ctgtgcggcagaaaactcaagcagttctcggtagagtctggggacaacgagaccaaccaa
tcaagacgcagcagatccgagaataagattccttcagattaccgggaggtgatgcggaag
ctggtgcagcgatggttgacccatcgccggaggaaagaccgtcagtcgaaggaggcccta
gtggagagatttaacgagctgaaacaggaactagccaacttcaggaaggagctgcgcgaa
ctgcttaagaaacggatgatgaagatcgagaccaagaagctgtcagccaacctgaccacg
cccttgggcagtgccagcctgaactacgagcgaacaacacgggagttctttatctag
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