Branchiostoma floridae (Florida lancelet): 118427626
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Entry
118427626 CDS
T01074
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1-like
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
bfo
Branchiostoma floridae (Florida lancelet)
Pathway
bfo03020
RNA polymerase
bfo03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bfo00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
118427626
09124 Replication and repair
03420 Nucleotide excision repair
118427626
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bfo03021
]
118427626
03400 DNA repair and recombination proteins [BR:
bfo03400
]
118427626
Enzymes [BR:
bfo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
118427626
Transcription machinery [BR:
bfo03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
118427626
DNA repair and recombination proteins [BR:
bfo03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
118427626
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_R
DUF2420
Motif
Other DBs
NCBI-GeneID:
118427626
NCBI-ProteinID:
XP_035693394
UniProt:
A0A9J7N7W4
LinkDB
All DBs
Position
12:complement(8775600..8796737)
Genome browser
AA seq
1986 aa
AA seq
DB search
MPVFGPILSDTSAPLRPVKRVQFGILSPDEIKRMSVTEGGIRYSEMMEGGRPKLCGLMDP
RQGVIDRSARCQTCAGNMAECPGHFGHIELAKPVYHIGFLTKTIKIMRCVCFFCSKLLVS
PDDPRIKDIVNKSKGQPKKRLTHVYDLCKGKMICEGGDEVDADVGPEEGKEEKPKGHGGC
GRYQPQIRRAGLDLTAEWKHVNEDSQERKIQLSAERVLEIFKRISDEECSIMGMDPRFAR
PDWMVCTVLPVAPLQVRPSVVMFGAARGQDDLTHKLADIVKINNQLKRNEMNGAAAHIIA
EDTKMLQFHVTTLVDNEVPGMPRAVQKSGRPLKSVKQRLKGKEGRIRGNLMGKRVDFSAR
AVITPDPNLQIDQVGCPRTVAQNLTFPEIVTPFNIDRMQELVRRGANQYPGAKYIIRDTG
HRIDLRYHPKPSDLHLQCGYKVERHIRDDDIVIFNRQPTLHKMSMMGHRVKILPWSTFRL
NLSVTTPYNADFDGDEMNMHVPQSVETRAEIMELAMVPRMIITPQSNRPVMGIVQDTLTA
VRKFTKRDVFIDRNDMMNLLMWLPTWDGKMPQPAILKPKPLWTGKQLFSLIIPGHVNCIR
MHSTHPDEEDSGPYKWISPGDTKVIVENGELISGILCKKSLGPSGGSLVHIVALEMGHET
SKLFYGYIQTVVNNWLLLEGHTIGIGDCIADTQTYQDIQNTIKKAKLDVIEVIEKAHNDE
LEPTPGNTLRQTFENQVNRILNDARDKTGGSAQKSLSEFNNFKSMVVAGSKGSKINISQV
IACVGQQNVEGKRIPFGFRHRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGR
EGLIDTAVKTSETGYIQRRLIKAMESVMIAYDGTVRNSNRHLVQLRYGEDGLDAVSIEFQ
NLATLKPSNRSFEKKFKLDYQNERYLRRILQEDIVREITSDARLQTEIEAEFEQLRVDRD
VLRSVNQTGDAKVALPCNLARIIWNAQKIFHVNTRAPTDLHPIKVVEGVRDLSRKLVIVK
GDDPISIQAQANATILFNTLLRSTLCTRRVLEEFRLSTEAFDWLLGEIESRFNQAIVQPG
EMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKKPKTPSLTVFLL
GQPANDAEKAKDILCRLEHTTLRKVTANTAIYYDPDPQNTVIEEDQEFVNVYYEMPDFDP
HRISPWLLRIELDRKRMTDKKLTMESIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNN
DDSKMMDEEEMVDKMDDDVFLRCIEANMLTDMTLQGIEQIAKVYMHLPQQDTKKRIIITD
EGEYKALQEWILETDGVNLMKVLSEKNVDPVRTTSNDIVEIFQILGIEAVRKAIEKEMNH
VISFDGSYVNYRHLALLCDIMTQKGHLMAITRHGINRQEVGPLMKCSFEETVDILMESAS
HSETDFMWGVSENIMLGQLARIGTGSFDLMLDAEKCKYGMEIPTNLVGGGLMAGPGPGMF
FGNAGSPTASMSPQMTPWQQVGTPAYGGAWSPGLGSGMTPGAAGFSPSAASDASGMSPAG
YSPAWSPTPGSPGSPGPASPYIPSPGGPMSPSYSPASPAYMPRSPGGMTPQSPGYSPTSP
SYSPTSPSYSPASPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP
TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS
YSPTSPNYTPTSPKYSPTSPSYSPTSPSYSPASPSYSPTSPSYSPSSPNYSPQSPSYSPS
SPSYSPSSPKYSPTSPSYSPTSPQYTPTSPKYSPTSPKYSPSSPKYTPTSPKYSPSSPKY
SPSSPKYSPTSPTYSPSSAKYSPASPSYSPSTPKYTPTSPKYSPASPTYTPTSPKYSPTS
PSYTPDTPKYSPTSPKYSPTSPTYSPTSPKGSTYSPTTPGYSPASPTYSPESPESRATQE
EEEDES
NT seq
5961 nt
NT seq
+upstream
nt +downstream
nt
atgcctgttttcgggccgatcctcagcgacacctcggcgcctttgcgcccggtgaaaaga
gtgcagttcggcatcctgagcccggacgaaattaaaaggatgtcggtcacggaaggtgga
atccgatactcggagatgatggagggaggtcggccgaagctctgcggcctgatggacccg
cgtcagggcgtgatcgaccgctcggccagatgccagacctgcgccggcaacatggcggaa
tgtcccggacactttggacacattgaactggccaagccagtctaccacatcggctttctc
acaaagactatcaagatcatgagatgtgtgtgtttcttctgctccaagctgttagtgagt
ccggatgatccaaggatcaaggacattgtgaataagtccaagggtcaacccaagaagcga
ctcacccacgtgtacgacctctgcaagggtaagatgatctgtgagggaggtgacgaagtg
gacgctgacgtcggtcctgaggaggggaaggaagaaaagcccaagggtcatggcggttgc
ggtcgctaccagccccagattcgcagggcaggactggacctgactgcagaatggaaacat
gtaaacgaggattcccaagagcggaaaatccagctcagtgccgagagagttctggaaatc
ttcaaacgcatctctgacgaggagtgtagcatcatgggtatggacccgaggtttgcccgt
ccagactggatggtttgcacggtacttcctgtggcgccactgcaagtccgaccctctgtc
gtcatgtttggtgccgccagaggacaggatgatttgacgcacaagctggcggacatcgtg
aagatcaacaaccagctgaagaggaacgagatgaacggcgcggcggcacacatcatcgct
gaggacaccaagatgctgcagttccacgtcaccacgctggtggacaacgaggtgcccggg
atgcccagggctgtgcaaaagtcgggtcgtccgctcaagtcagtcaaacagcggctaaag
ggcaaggaaggtcgtatccgtggtaacctgatggggaagcgtgtggacttctccgcccgc
gctgtgatcacgcccgacccaaacctgcagatcgaccaggtgggctgtcctcggactgtc
gcacaaaacctgaccttcccagagattgtcacacccttcaacattgacagaatgcaagag
ctcgtgagaagaggagcaaaccagtacccaggtgcaaagtacatcatcagagacacggga
cacagaatcgatctccgctatcaccccaaacccagcgaccttcatctgcagtgtgggtac
aaggtggagcgacacatccgtgatgacgacatcgtgatcttcaaccgccagcccacgcta
cataaaatgtccatgatgggtcacagggtcaagatccttccgtggtcaaccttccgtctg
aacctcagcgtaacgacaccctacaacgctgactttgacggagacgagatgaacatgcac
gtgccccagtccgtggagacgcgggcagagatcatggagctggccatggtcccgcgtatg
atcatcactccgcagtcgaaccgccccgtcatgggtattgtacaggacacactcacggcc
gtgaggaagttcacaaaaagggatgtcttcatcgacaggaatgacatgatgaacctgctg
atgtggttacccacgtgggacggtaagatgccccagcctgccatcctcaaacccaagccc
ctgtggacgggcaagcagctcttctctctcattatccccgggcacgtcaactgcatccgt
atgcacagtacgcatccggacgaggaggatagcggcccatacaagtggatatcacctgga
gataccaaggtgatagtagaaaacggagagctgatctccggcatcctgtgcaagaagtcg
ctgggtccgtccggcggctcattggtccacatcgtggccttggagatgggtcatgagacc
tcgaaactcttctacggatacatccagactgtggtcaacaactggctactgctggagggt
cacaccatcggtatcggggactgtatcgccgacactcagacctaccaggacattcagaac
accatcaagaaggccaagcttgatgtgatagaggtcattgagaaggcccataacgacgag
ttggagccgacgcccggtaacaccctgcgacaaacatttgagaatcaggtgaatcgaatc
ctgaacgacgctcgtgacaagaccggaggcagtgcccagaagagcttgtccgagtttaac
aacttcaagtccatggtggtggctggctccaaaggttccaaaatcaacatctcgcaggtt
atcgcctgtgtgggacaacagaacgtggagggaaagcgtatccccttcggcttccgccat
cggacactgccccacttcatcaaggacgactacggtcctgagtcgcgtgggttcgtggag
aactcgtatctggccggcctgacgccgtcagagtttttcttccacgctatgggaggtcgt
gagggactgattgacacagctgtaaagacatcagaaactggttacattcagcgacgtctg
atcaaggctatggagagcgtgatgatcgcgtacgacggtacggtccggaattccaaccgc
catctggtacagttgcggtacggagaggacggtctcgacgccgtttctatcgagttccaa
aacttggccacgctcaagccatccaacaggtccttcgagaagaagttcaaactggactac
cagaatgaaaggtacctacgaagaattctacaggaggacatcgtccgtgagatcaccagc
gacgcccggctacagacggagatcgaggccgagttcgaacagctgcgagttgacagagac
gtgctgcgatctgtcaatcaaaccggcgatgccaaggtggccctgccttgtaacttggcc
cgaatcatatggaacgcccagaagatcttccatgttaacacccgagcaccgaccgacctt
cacccaatcaaggtcgttgagggcgttcgagacttgagtaggaagctggtgattgtgaag
ggcgatgaccccatcagcatacaggcgcaggcgaacgccaccatcctgttcaacaccctc
ctccggtccacactctgtacgcgccgcgtgctggaggagttccgactctccaccgaggcg
tttgattggttgttgggagaaatcgagtcccggttcaaccaggccattgtccagccaggt
gagatggttggcgcgctggctgcccagtccctgggagagcccgccacacagatgacgcta
aacaccttccattacgccggcgtgtccgccaaaaacgtcacgctgggtgtgcctcgtctc
aaggaaatcatcaacgtgtccaagaagcccaagacgccgtcgctgaccgtgttcttgctt
ggacagccagcaaatgatgccgagaaggcaaaggatatcctctgcagacttgagcacaca
actctaaggaaggtcacggcgaacaccgccatctactacgaccccgacccacaaaacaca
gtcattgaggaagatcaggagttcgtgaacgtgtactacgagatgccggacttcgaccct
caccggatctccccctggctgctgcgtatcgagctggaccgcaaacgcatgacggacaag
aagctcaccatggagtcaattgctgagaagatcaatgcagggttcggagacgacttgaat
tgcatcttcaacgatgacaacgctgagaagttggtgcttcgaatccgtatcatgaacaat
gatgacagcaaaatgatggacgaggaggagatggtggataagatggatgacgatgtattc
ctgcgctgtatcgaggccaacatgctgacagacatgacactacagggcattgaacagatc
gctaaggtgtatatgcatctgccgcagcaggacaccaagaagcgaatcatcatcacagat
gagggggagtacaaggctctgcaggagtggatcctggagaccgacggagtcaacctcatg
aaggttctctcggaaaagaacgtggaccctgtccgaaccacgtctaacgacattgtagag
atcttccagatccttggtattgaagctgtgcggaaggcgattgagaaggaaatgaaccac
gttatctccttcgacggttcctacgtgaactaccgccatctcgcgctgctgtgcgacatc
atgacacagaagggccatctgatggccatcacgcgccatggcatcaaccgtcaggaggtc
ggaccactcatgaagtgttcctttgaagaaacggttgacatcctgatggagtcagcctcc
cacagtgagacagacttcatgtggggggtttcggagaacatcatgctgggacagctggcg
cgcatcggtaccggctccttcgacctgatgctggacgccgagaagtgtaaatacgggatg
gagatccccaccaacctggtgggaggggggctcatggctgggccagggccggggatgttc
ttcggaaacgctggatctcccacagcatcgatgtcgccgcagatgacaccatggcaacaa
gtgggcacacctgcctacggtggagcgtggtcaccaggacttggaagcggtatgacccca
ggagctgcaggattctcgccctctgctgcatcagacgccagcgggatgagtccagcgggc
tacagccccgcctggtcccccacccctggctccccggggtcccctggccctgccagcccc
tacatcccctccccagggggacccatgtctcccagctactctccggcctccccagcctac
atgcctcgcagcccaggcgggatgaccccgcagagtcccggctattccccgacctcacca
tcgtattcgccaacatcgccaagctactccccagcaagtccgaactacagcccaacatcg
ccgagttattcaccgacgtcaccaagttacagtccaaccagtcccagctattctccgact
tcaccaagttactcgccaacgagtcccagttactctccgacatcgccaagctactcccct
acatcaccgtcgtattctcccacatcgccttcgtacagtccaacctctccttcatacagt
ccgacatccccctcgtatagtcccacgtcaccctcctattcccccacctccccatcatac
agccctaccagcccctcatacagccctaccagtccatcctacagccccactagcccttcg
tactcacccacgtctcccaactacacacccacgtcacccaagtactcacccacctctccc
agctactcccccaccagcccatcctactcgcccgcctcacccagctacagtcccaccagt
cccagctactcacccagctcgcccaactactcgccccaatcacccagctactcacccagc
tcacccagctactccccatccagccccaagtactctccaacctcacccagctacagcccc
acctcaccccagtacactcccacgtcacccaagtacagtcccacctcacccaagtacagt
ccctcctcacccaagtacaccccgacatcacccaagtacagtccttcctcccccaaatac
agcccctcctctcccaaatactcacccacgtcccctacctactccccatccagtgccaag
tactcccctgcctcgcctagctactccccctcaactccaaaatacacacccacctccccc
aaatacagccctgccagccccacctacacacccacatcccccaaatacagccccacctca
cccagctacactccggatactccaaaatacagccccacctcgcccaagtacagccccacg
tcacccacctactcacccacgagccccaagggttccacatactccccaacaaccccgggt
tactctcctgcgtctcccacgtacagtcccgagagcccagagagtcgggccacacaagag
gaagaggaagacgaatcgtaa
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integrated database retrieval system
