Branchiostoma floridae (Florida lancelet): 118427888
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Entry
118427888 CDS
T01074
Name
(RefSeq) vacuolar protein sorting-associated protein 16 homolog
KO
K20180
vacuolar protein sorting-associated protein 16
Organism
bfo
Branchiostoma floridae (Florida lancelet)
Pathway
bfo04140
Autophagy - animal
bfo04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
bfo00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
118427888
04148 Efferocytosis
118427888
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
bfo04131
]
118427888
Membrane trafficking [BR:
bfo04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
118427888
Hops complex
118427888
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps16_N
Vps16_C
Beta-prop_NUP159_NUP214
Beta-prop_WDR19_1st
Motif
Other DBs
NCBI-GeneID:
118427888
NCBI-ProteinID:
XP_035693743
UniProt:
A0A9J7M4C3
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Position
12:511602..529259
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AA seq
866 aa
AA seq
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MAHVTGDWNPLGQVFYRKQEIYSMGWRDIDLDKFVVAAAPYGGPIALIRDETKLVRVQGS
IRPVIYIYTSSGREISSIRWNSGHVIHLGWSCSEELLCVQEDGSVLVYDIFGQFKRTFSM
GTEAKEMKVRDCRIFNSHQGTGLAVMTSSYRIFMVNNVDEPRIRRMADVPGLDAPPSSWV
VISQDRQSRVLLARENDLYLLDHGGQYSRQLAPVSQQVEAYTEMAVSFNNKYLALFTNTG
LLWIGSSDLERAYCEFDTKCPQRPKQLAWCGTGAIVGYWENILLMVGPGKDYVKYNVDST
VHLSHLSHLSHLSIVPQVWYRCYSRLLGEHTADSGPREGLCKVVWCGTGAIVGYWENILL
MVGPGKDYVKYNVDSTVHLVPELDGLRILSNYSHEFLHKVPNGSIEPGAMLYEASREFQN
GSPKADEYIRMIQDRLQVAVDQCIQAAGCEHEPTTQRMLLRAASFGKCFLSDMNPEPFVR
MCRMLRVLNSVRDFTIGIPLSCAQLEQLSMPVLTDRLVLRRQYPLAIRICQYLKMPDAEG
VSRILAHWACYKVQQTPRDDVTRPQLLEYEPKSAEQVPLLMKMGRDQLALAKAVDSGDTD
LVYTVVMHLKEKLTLGDFLMTIRNLPTAQSLYLQYCKEQNREMLQDLYYQEDNFQESANC
RVMDSYNETRMDERLRALQQAQEAYTKARNEFAAKVTEEQVRLLKYQMRLEEELKRPYLD
LSLHDTISQLTTEGNHKLAEQLRKEFKVPDKRFWWLKIQALAEGSDWAELDRFAKSKKSP
IGYEPFIDVCLKHQNRYEANKYVGRIADPAKVKAYIKIGNLEQAAETAMQQRSEEDLNLV
LSKCTSSHRVLAEKISTMKAQLSSKK
NT seq
2601 nt
NT seq
+upstream
nt +downstream
nt
atggcgcatgtgactggcgattggaacccgctgggccaggtgttttacaggaagcaggag
atctactccatgggatggcgcgacatcgacctggacaagttcgtggtcgccgcggcgccg
tacggcgggccgatcgcgctgatacgggacgagactaagctggtgcgcgtacaaggcagc
atccgccctgttatctacatctacacttcctctggcagggagatctcatctatacggtgg
aacagtggccatgtgatccacctgggctggtcctgcagcgaggagctgctgtgtgtgcag
gaggatggcagcgttctcgtctacgacatcttcgggcagttcaaacgtaccttcagcatg
ggcaccgaagcgaaggagatgaaggtgcgagactgccgcatcttcaacagccaccagggc
acggggctggcggtcatgaccagctcataccgcatcttcatggtcaacaacgtggacgag
ccccgcattcgcaggatggccgacgtgccaggtctggacgcccctcccagcagctgggtg
gtgatctcccaggaccgacagtcccgcgtgctgctggcgcgggaaaacgatctgtacctg
ctggaccacggcgggcagtactccagacagcttgccccagtaagccagcaggtcgaagcg
tacacagaaatggcggtctccttcaacaacaagtacctggcgctgttcaccaacacgggg
ctgctgtggatagggtcatccgatctggagagagcgtactgtgagtttgataccaagtgt
ccgcaaagacccaaacaactggcatggtgtggtacaggtgctatagtaggttactgggag
aacatactgctgatggtgggcccagggaaggactatgtgaagtataacgtagacagtact
gtgcacctgtctcacctgtcacacctgtctcacctgtccattgttccacaggtgtggtac
aggtgctatagtaggttactgggagaacatactgctgatagtgggcccagggaaggacta
tgtaaagtagtgtggtgtggtacaggtgctatagtaggttactgggagaacatactgctg
atggtgggcccagggaaggactatgtgaagtataacgtggacagtactgtacaccttgtc
ccagagctggacggactccgcatcctcagtaactacagccacgagtttctgcacaaagtt
cccaatgggtccatcgagccaggtgccatgctgtatgaagcctccagagagttccagaac
gggagtccgaaggcagacgagtacatccggatgatccaggaccggctgcaggtggcggtg
gaccagtgcatccaggcggcagggtgtgagcacgaaccgacgacgcagagaatgctactc
agggcagcatcatttggaaagtgtttcctgagcgacatgaacccggaaccgtttgtgcgg
atgtgcagaatgttgcgagtgctgaactcggtccgagacttcaccatcgggatcccgctc
tcctgtgcacaactggagcagctatccatgccagtactgacagacagactggtcctgaga
agacagtacccgctggctatccgcatctgccagtacctgaagatgccggatgctgagggt
gtcagccgcatcctggcacactgggcctgttataaggtgcagcagacaccacgtgacgat
gtaacccgaccccagctgctggaatacgagcccaagtctgcggagcaggttcctctgctg
atgaagatggggcgagaccagctggccctggccaaggctgtggacagcggggacactgat
ctggtctacactgtagtgatgcatctcaaggagaagttgaccttgggcgacttcctcatg
acgatccggaaccttccaacggcgcagagcctctacctgcagtactgtaaggagcagaac
cgagagatgttgcaggacctgtactaccaggaggacaacttccaggagtcggcaaactgt
cgcgtcatggacagctacaacgaaacgaggatggacgagcgactgcgagccttacagcag
gcccaggaggcgtacaccaaggccaggaacgagttcgctgcgaaggtgacagaggagcag
gtgagactgctgaagtaccagatgaggttggaggaggagctgaagcgaccatatttggac
ctgtccttacacgacaccatctcacaactcaccaccgagggaaaccacaagctggccgag
cagcttcgcaaggagttcaaggtgccggataagaggttctggtggctgaagatccaggct
ctagcggagggcagtgattgggcggagctggaccgcttcgctaagagcaagaagtccccc
attgggtatgagcccttcatcgatgtgtgtctgaagcaccagaacagatacgaggctaac
aagtacgtcgggcggatcgccgaccccgccaaggtcaaggcttacatcaagatcggtaac
ctggagcaggcggcagagacagcgatgcagcagagaagtgaggaggatctgaacctggtg
ctgagtaagtgcacctcctcacatcgtgtcctggctgagaagatcagcaccatgaaggca
cagctctccagcaagaaataa
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